Wall clock time and date at job start Tue Mar 31 2020 20:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46968 * 2 1 4 4 C 1.53002 * 109.46886 * 240.00591 * 2 1 3 5 5 C 1.53004 * 109.46813 * 174.99770 * 4 2 1 6 6 N 1.46506 * 109.46978 * 179.97438 * 5 4 2 7 7 C 1.36935 * 120.00110 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99640 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00078 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00178 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46829 * 59.99963 * 11 9 7 13 13 H 1.48493 * 109.47297 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46867 * 300.00264 * 11 9 7 15 15 N 1.46499 * 109.47361 * 120.00353 * 2 1 3 16 16 C 1.34769 * 119.99946 * 275.00006 * 15 2 1 17 17 O 1.21277 * 120.00187 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99681 * 179.97438 * 16 15 2 19 19 H 1.09000 * 115.56127 * 34.31865 * 18 16 15 20 20 C 1.53002 * 117.49943 * 248.61727 * 18 16 15 21 21 C 1.52997 * 60.00115 * 252.51631 * 20 18 16 22 22 H 1.09003 * 117.49743 * 107.51928 * 21 20 18 23 23 C 1.50704 * 117.49504 * 252.51026 * 21 20 18 24 24 C 1.38252 * 120.00406 * 8.86700 * 23 21 20 25 25 C 1.38212 * 120.07221 * 180.25777 * 24 23 21 26 26 C 1.38264 * 120.06956 * 359.48390 * 25 24 23 27 27 C 1.38363 * 119.99595 * 0.25814 * 26 25 24 28 28 F 1.35104 * 120.03285 * 180.02562 * 27 26 25 29 29 C 1.38374 * 119.99769 * 188.61263 * 23 21 20 30 30 F 1.35106 * 120.03485 * 359.97438 * 29 23 21 31 31 H 1.09000 * 109.47765 * 59.99504 * 1 2 3 32 32 H 1.08998 * 109.47523 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47407 * 299.99417 * 1 2 3 34 34 H 1.09004 * 109.46921 * 294.99834 * 4 2 1 35 35 H 1.08996 * 109.47342 * 54.99930 * 4 2 1 36 36 H 1.08991 * 109.47209 * 299.99656 * 5 4 2 37 37 H 1.09003 * 109.46888 * 60.00321 * 5 4 2 38 38 H 0.97003 * 119.99432 * 0.02562 * 6 5 4 39 39 H 0.96993 * 120.00306 * 179.97438 * 10 9 7 40 40 H 0.97005 * 119.99367 * 94.99868 * 15 2 1 41 41 H 1.09007 * 117.49518 * 145.02225 * 20 18 16 42 42 H 1.08997 * 117.51678 * 359.97438 * 20 18 16 43 43 H 1.08000 * 119.96392 * 359.97438 * 24 23 21 44 44 H 1.08002 * 119.96858 * 179.76974 * 25 24 23 45 45 H 1.07993 * 119.99814 * 180.23505 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 7 4.0532 -1.3041 -2.5098 7 6 5.3951 -1.3401 -2.7797 8 1 6.0936 -0.8593 -2.1107 9 6 5.8579 -1.9953 -3.9126 10 7 5.0068 -2.5816 -4.7276 11 14 7.6887 -2.0450 -4.2805 12 1 8.4001 -2.7153 -3.1626 13 1 7.9205 -2.7991 -5.5385 14 1 8.2006 -0.6593 -4.4331 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3570 17 8 1.8582 1.1582 2.4117 18 6 2.6489 -0.7291 3.5876 19 1 3.3929 -1.5060 3.4114 20 6 1.6566 -0.9473 4.7315 21 6 2.7730 0.0890 4.8746 22 1 2.4915 1.1412 4.8317 23 6 3.9142 -0.2413 5.8017 24 6 4.0219 -1.5097 6.3411 25 6 5.0650 -1.8126 7.1958 26 6 6.0090 -0.8508 7.5047 27 6 5.9071 0.4180 6.9623 28 9 6.8294 1.3582 7.2633 29 6 4.8574 0.7235 6.1090 30 9 4.7560 1.9616 5.5778 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.7515 -1.7714 -1.2057 35 1 1.6053 -0.2616 -2.1370 36 1 3.8531 0.4371 -1.3574 37 1 3.9994 -1.0728 -0.4261 38 1 3.4257 -1.7356 -3.1108 39 1 5.3301 -3.0391 -5.5194 40 1 2.2490 -1.6319 1.1524 41 1 1.7476 -1.8681 5.3079 42 1 0.6408 -0.5766 4.5945 43 1 3.2875 -2.2633 6.0980 44 1 5.1453 -2.8029 7.6192 45 1 6.8257 -1.0899 8.1697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273191943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:31 Heat of formation + Delta-G solvation = -73.744102 kcal Electronic energy + Delta-G solvation = -28201.073658 eV Core-core repulsion = 23855.304484 eV Total energy + Delta-G solvation = -4345.769174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.72901 -48.80141 -40.49569 -39.36729 -37.21224 -36.05177 -34.34623 -31.99598 -31.19654 -30.73024 -30.50568 -27.88600 -25.27485 -24.53676 -23.85085 -23.07163 -21.68891 -21.23605 -20.59217 -20.18548 -18.41367 -17.90915 -17.30652 -17.17667 -16.84090 -16.59600 -16.15431 -15.62804 -15.20639 -15.08650 -14.79723 -14.72156 -14.48067 -14.43577 -13.80117 -13.54550 -13.39180 -13.32414 -12.92597 -12.86479 -12.77454 -12.63288 -12.45207 -12.08940 -11.90053 -11.59392 -11.24248 -11.15042 -11.01708 -10.91531 -10.78370 -10.64181 -10.58155 -10.07695 -9.87400 -9.70290 -9.18444 -9.10228 -9.01905 -8.86163 -6.93510 -5.77520 -3.06338 0.48407 0.52633 2.40505 2.85443 3.10831 3.35828 3.43945 3.48212 3.49447 3.62601 3.97292 4.05382 4.20544 4.37243 4.41623 4.49332 4.56692 4.65815 4.74112 4.86960 5.00256 5.20960 5.24417 5.33606 5.34716 5.39054 5.49867 5.53213 5.54350 5.58968 5.70841 5.73157 5.75082 5.91942 5.92553 6.02197 6.22570 6.26721 6.32358 6.32830 6.54056 6.80553 6.85827 7.54345 7.69196 8.23744 8.41656 9.52631 10.10132 10.44958 11.45377 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.002568 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.733024 B =10901.635460 C =12877.985990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.712 5.712 16 C 0.543 3.457 17 O -0.541 6.541 18 C -0.171 4.171 19 H 0.130 0.870 20 C -0.137 4.137 21 C -0.091 4.091 22 H 0.133 0.867 23 C -0.058 4.058 24 C -0.103 4.103 25 C -0.096 4.096 26 C -0.130 4.130 27 C 0.069 3.931 28 F -0.128 7.128 29 C 0.078 3.922 30 F -0.121 7.121 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.383 0.617 39 H 0.256 0.744 40 H 0.403 0.597 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -0.295 26.908 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.363 5.363 16 C 0.329 3.671 17 O -0.419 6.419 18 C -0.192 4.192 19 H 0.147 0.853 20 C -0.174 4.174 21 C -0.110 4.110 22 H 0.151 0.849 23 C -0.059 4.059 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.149 4.149 27 C 0.049 3.951 28 F -0.106 7.106 29 C 0.058 3.942 30 F -0.100 7.100 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.237 0.763 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.515 0.673 26.902 27.940 hybrid contribution 1.281 -0.259 -0.628 1.450 sum -6.234 0.414 26.274 27.007 Atomic orbital electron populations 1.22154 0.95409 1.01990 1.02293 1.21002 0.93574 0.97740 0.83705 0.89355 1.22065 0.98061 1.00784 0.96369 1.20633 0.90363 0.95635 0.90739 1.42357 1.05363 1.64949 1.25130 1.19193 0.83852 1.28525 1.05589 0.91306 1.24736 0.97730 1.00858 0.97637 1.69644 1.32899 1.40648 1.15156 0.86262 0.85093 0.77543 0.77279 1.21256 1.21638 1.21224 1.46025 1.66692 1.14217 1.09377 1.19468 0.77306 0.86659 0.83711 1.90700 1.50458 1.15751 1.84967 1.22418 1.04535 1.03439 0.88843 0.85261 1.23153 0.95381 1.00345 0.98542 1.20915 0.95535 0.99682 0.94823 0.84881 1.19082 0.95068 0.93100 0.98621 1.21066 0.98843 0.95342 0.96837 1.21070 0.93427 0.99586 0.97358 1.21125 1.01385 0.90924 1.01478 1.17693 0.89003 0.88166 1.00212 1.91546 1.63730 1.63671 1.91694 1.17488 0.96595 0.81929 0.98220 1.91565 1.95656 1.38422 1.84321 0.91508 0.92496 0.92473 0.91331 0.90215 0.96441 0.96412 0.78322 0.93454 0.76259 0.87125 0.87316 0.83971 0.83999 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.48 37.16 0.35 -1.47 16 2 C 0.14 1.93 2.57 -67.93 -0.17 1.76 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.15 3.09 6.15 -4.04 -0.02 3.06 16 6 N -0.73 -18.66 5.60 -59.90 -0.34 -19.00 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 11 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 N -0.71 -8.63 4.53 -53.81 -0.24 -8.88 16 16 C 0.54 7.05 7.58 -10.99 -0.08 6.97 16 17 O -0.54 -9.00 15.92 5.56 0.09 -8.91 16 18 C -0.17 -1.63 5.82 -91.77 -0.53 -2.17 16 19 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.14 -0.95 9.56 -26.73 -0.26 -1.21 16 21 C -0.09 -0.88 5.31 -91.77 -0.49 -1.36 16 22 H 0.13 1.57 7.39 -51.93 -0.38 1.18 16 23 C -0.06 -0.52 5.62 -104.56 -0.59 -1.11 16 24 C -0.10 -0.65 9.29 -39.59 -0.37 -1.01 16 25 C -0.10 -0.53 10.04 -39.58 -0.40 -0.92 16 26 C -0.13 -0.90 10.02 -39.53 -0.40 -1.30 16 27 C 0.07 0.69 7.31 -39.37 -0.29 0.41 16 28 F -0.13 -1.45 17.18 2.25 0.04 -1.42 16 29 C 0.08 0.86 7.25 -39.37 -0.29 0.58 16 30 F -0.12 -1.63 16.53 2.25 0.04 -1.59 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.36 7.75 -51.93 -0.40 -0.05 16 38 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.40 4.17 8.60 -40.82 -0.35 3.81 16 41 H 0.11 0.46 6.18 -51.92 -0.32 0.14 16 42 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.14 0.54 6.03 -52.49 -0.32 0.22 16 44 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 45 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -34.45 388.65 -9.02 -43.47 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.26 Total: 7.95 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.91 Total: -7.45 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.15 Total: -55.48 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.45 -9.02 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273191943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.272 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds