Wall clock time and date at job start Tue Mar 31 2020 20:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46968 * 2 1 4 4 C 1.53002 * 109.46886 * 240.00591 * 2 1 3 5 5 C 1.53004 * 109.46813 * 174.99770 * 4 2 1 6 6 N 1.46506 * 109.46978 * 179.97438 * 5 4 2 7 7 C 1.36935 * 120.00110 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99640 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00078 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00178 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46829 * 59.99963 * 11 9 7 13 13 H 1.48493 * 109.47297 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46867 * 300.00264 * 11 9 7 15 15 N 1.46499 * 109.47361 * 120.00353 * 2 1 3 16 16 C 1.34769 * 119.99946 * 275.00006 * 15 2 1 17 17 O 1.21277 * 120.00187 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99681 * 179.97438 * 16 15 2 19 19 H 1.09000 * 115.56127 * 34.31865 * 18 16 15 20 20 C 1.53002 * 117.49943 * 248.61727 * 18 16 15 21 21 C 1.52997 * 60.00115 * 252.51631 * 20 18 16 22 22 H 1.09003 * 117.49743 * 107.51928 * 21 20 18 23 23 C 1.50704 * 117.49504 * 252.51026 * 21 20 18 24 24 C 1.38252 * 120.00406 * 8.86700 * 23 21 20 25 25 C 1.38212 * 120.07221 * 180.25777 * 24 23 21 26 26 C 1.38264 * 120.06956 * 359.48390 * 25 24 23 27 27 C 1.38363 * 119.99595 * 0.25814 * 26 25 24 28 28 F 1.35104 * 120.03285 * 180.02562 * 27 26 25 29 29 C 1.38374 * 119.99769 * 188.61263 * 23 21 20 30 30 F 1.35106 * 120.03485 * 359.97438 * 29 23 21 31 31 H 1.09000 * 109.47765 * 59.99504 * 1 2 3 32 32 H 1.08998 * 109.47523 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47407 * 299.99417 * 1 2 3 34 34 H 1.09004 * 109.46921 * 294.99834 * 4 2 1 35 35 H 1.08996 * 109.47342 * 54.99930 * 4 2 1 36 36 H 1.08991 * 109.47209 * 299.99656 * 5 4 2 37 37 H 1.09003 * 109.46888 * 60.00321 * 5 4 2 38 38 H 0.97003 * 119.99432 * 0.02562 * 6 5 4 39 39 H 0.96993 * 120.00306 * 179.97438 * 10 9 7 40 40 H 0.97005 * 119.99367 * 94.99868 * 15 2 1 41 41 H 1.09007 * 117.49518 * 145.02225 * 20 18 16 42 42 H 1.08997 * 117.51678 * 359.97438 * 20 18 16 43 43 H 1.08000 * 119.96392 * 359.97438 * 24 23 21 44 44 H 1.08002 * 119.96858 * 179.76974 * 25 24 23 45 45 H 1.07993 * 119.99814 * 180.23505 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 7 4.0532 -1.3041 -2.5098 7 6 5.3951 -1.3401 -2.7797 8 1 6.0936 -0.8593 -2.1107 9 6 5.8579 -1.9953 -3.9126 10 7 5.0068 -2.5816 -4.7276 11 14 7.6887 -2.0450 -4.2805 12 1 8.4001 -2.7153 -3.1626 13 1 7.9205 -2.7991 -5.5385 14 1 8.2006 -0.6593 -4.4331 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3570 17 8 1.8582 1.1582 2.4117 18 6 2.6489 -0.7291 3.5876 19 1 3.3929 -1.5060 3.4114 20 6 1.6566 -0.9473 4.7315 21 6 2.7730 0.0890 4.8746 22 1 2.4915 1.1412 4.8317 23 6 3.9142 -0.2413 5.8017 24 6 4.0219 -1.5097 6.3411 25 6 5.0650 -1.8126 7.1958 26 6 6.0090 -0.8508 7.5047 27 6 5.9071 0.4180 6.9623 28 9 6.8294 1.3582 7.2633 29 6 4.8574 0.7235 6.1090 30 9 4.7560 1.9616 5.5778 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.7515 -1.7714 -1.2057 35 1 1.6053 -0.2616 -2.1370 36 1 3.8531 0.4371 -1.3574 37 1 3.9994 -1.0728 -0.4261 38 1 3.4257 -1.7356 -3.1108 39 1 5.3301 -3.0391 -5.5194 40 1 2.2490 -1.6319 1.1524 41 1 1.7476 -1.8681 5.3079 42 1 0.6408 -0.5766 4.5945 43 1 3.2875 -2.2633 6.0980 44 1 5.1453 -2.8029 7.6192 45 1 6.8257 -1.0899 8.1697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273191943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:31 Heat of formation + Delta-G solvation = -95.166030 kcal Electronic energy + Delta-G solvation = -28202.002583 eV Core-core repulsion = 23855.304484 eV Total energy + Delta-G solvation = -4346.698099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.54405 -49.63800 -41.36463 -40.12937 -38.20954 -37.14157 -36.07345 -33.62236 -32.28341 -31.60812 -31.24553 -29.43772 -26.21262 -25.68741 -25.09938 -23.71397 -23.21636 -22.10846 -21.67666 -21.13706 -19.25190 -19.11752 -18.65328 -18.02726 -17.70657 -17.43399 -17.23165 -16.71151 -16.31620 -16.07515 -15.86289 -15.66501 -15.53211 -15.43481 -15.23958 -15.15637 -14.89660 -14.27277 -14.10451 -13.67292 -13.57540 -13.41345 -13.28516 -13.11753 -12.90563 -12.88193 -12.66031 -12.39636 -12.31626 -12.22369 -12.02702 -11.95012 -11.78443 -11.65622 -11.60624 -10.97522 -10.89989 -10.09407 -9.78872 -9.75859 -9.03258 -7.98037 -5.27265 -0.10001 -0.08329 1.45853 1.47773 1.48688 1.55048 2.11083 2.34080 2.53802 2.70651 2.93321 3.25999 3.35275 3.43118 3.55586 3.60366 3.74959 3.80178 3.91260 4.04942 4.05569 4.14766 4.18962 4.20483 4.38161 4.54985 4.64207 4.70174 4.75137 4.77300 4.81457 4.85593 4.93681 4.97446 4.99952 5.04545 5.20285 5.23332 5.25673 5.30685 5.32352 5.45733 5.56710 5.75772 6.24626 6.57061 7.25254 7.31200 8.05790 8.30627 9.25014 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.002568 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.733024 B =10901.635460 C =12877.985990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.062 0.938 4 C -0.117 4.117 5 C 0.154 3.846 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.069 0.931 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.276 1.276 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.706 5.706 16 C 0.536 3.464 17 O -0.587 6.587 18 C -0.179 4.179 19 H 0.150 0.850 20 C -0.102 4.102 21 C -0.108 4.108 22 H 0.097 0.903 23 C -0.064 4.064 24 C -0.092 4.092 25 C -0.080 4.080 26 C -0.125 4.125 27 C 0.043 3.957 28 F -0.146 7.146 29 C 0.036 3.964 30 F -0.150 7.150 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.001 0.999 37 H 0.024 0.976 38 H 0.376 0.624 39 H 0.253 0.747 40 H 0.414 0.586 41 H 0.153 0.847 42 H 0.107 0.893 43 H 0.179 0.821 44 H 0.185 0.815 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 -3.499 28.645 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.080 0.920 4 C -0.155 4.155 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.384 4.384 8 H 0.087 0.913 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.202 1.202 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.357 5.357 16 C 0.324 3.676 17 O -0.468 6.468 18 C -0.200 4.200 19 H 0.168 0.832 20 C -0.138 4.138 21 C -0.127 4.127 22 H 0.116 0.884 23 C -0.065 4.065 24 C -0.110 4.110 25 C -0.098 4.098 26 C -0.144 4.144 27 C 0.023 3.977 28 F -0.124 7.124 29 C 0.016 3.984 30 F -0.129 7.129 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.019 0.981 37 H 0.042 0.958 38 H 0.209 0.791 39 H 0.062 0.938 40 H 0.251 0.749 41 H 0.170 0.830 42 H 0.125 0.875 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.808 -2.538 28.670 29.823 hybrid contribution 1.352 0.750 -1.115 1.906 sum -6.456 -1.789 27.555 28.358 Atomic orbital electron populations 1.22061 0.93346 1.03157 1.02339 1.20820 0.95053 0.96164 0.83458 0.91991 1.21892 0.94388 1.01938 0.97331 1.20754 0.93669 0.93925 0.88915 1.42534 1.04457 1.65263 1.26498 1.19552 0.85313 1.27950 1.05595 0.91300 1.25538 1.02027 1.01043 0.97688 1.69786 1.34684 1.41650 1.15543 0.85242 0.80084 0.77534 0.77090 1.20156 1.21692 1.20808 1.45974 1.66267 1.14658 1.08811 1.20117 0.76449 0.86255 0.84758 1.90683 1.52504 1.17857 1.85737 1.22435 1.06412 1.03691 0.87455 0.83233 1.23355 0.94145 1.00464 0.95859 1.20772 0.97613 0.98735 0.95548 0.88441 1.19177 0.94352 0.93994 0.98975 1.21501 0.99521 0.94363 0.95600 1.21596 0.91740 1.00688 0.95748 1.21519 1.02371 0.89596 1.00898 1.18100 0.88957 0.89283 1.01390 1.91488 1.64338 1.64654 1.91966 1.18017 0.98555 0.81726 1.00137 1.91477 1.95994 1.40350 1.85059 0.90772 0.90689 0.93156 0.89857 0.90244 0.98070 0.95814 0.79148 0.93789 0.74915 0.82975 0.87489 0.80409 0.79788 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.48 71.98 0.68 -2.56 16 2 C 0.15 3.96 2.57 44.99 0.12 4.08 16 3 H 0.06 1.98 7.58 -2.39 -0.02 1.97 16 4 C -0.12 -3.48 4.87 30.60 0.15 -3.33 16 5 C 0.15 6.17 6.15 86.38 0.53 6.70 16 6 N -0.74 -37.97 5.60 -343.44 -1.92 -39.89 16 7 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 10 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 11 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 N -0.71 -16.48 4.53 -442.54 -2.00 -18.48 16 16 C 0.54 13.92 7.58 87.66 0.66 14.59 16 17 O -0.59 -20.50 15.92 -3.02 -0.05 -20.54 16 18 C -0.18 -3.15 5.82 -11.54 -0.07 -3.21 16 19 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 20 C -0.10 -1.11 9.56 30.59 0.29 -0.82 16 21 C -0.11 -2.06 5.31 -11.54 -0.06 -2.12 16 22 H 0.10 2.55 7.39 -2.39 -0.02 2.54 16 23 C -0.06 -1.11 5.62 -19.83 -0.11 -1.22 16 24 C -0.09 -0.79 9.29 22.27 0.21 -0.59 16 25 C -0.08 -0.52 10.04 22.27 0.22 -0.29 16 26 C -0.13 -1.45 10.02 22.31 0.22 -1.22 16 27 C 0.04 0.87 7.31 22.41 0.16 1.03 16 28 F -0.15 -3.55 17.18 44.97 0.77 -2.78 16 29 C 0.04 0.84 7.25 22.41 0.16 1.00 16 30 F -0.15 -4.55 16.53 44.97 0.74 -3.81 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.02 0.94 7.75 -2.39 -0.02 0.92 16 38 H 0.38 19.98 7.67 -92.71 -0.71 19.27 16 39 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.41 7.74 8.60 -92.70 -0.80 6.94 16 41 H 0.15 0.39 6.18 -2.38 -0.01 0.38 16 42 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.18 0.20 6.03 -2.91 -0.02 0.18 16 44 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 45 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -79.23 388.65 3.86 -75.37 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.47 Total: 25.36 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.48 Total: -5.07 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.65 Total: -116.83 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.52 Total: -6.59 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -79.23 3.86 -75.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273191943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.797 kcal (2) G-P(sol) polarization free energy of solvation -79.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds