Wall clock time and date at job start Tue Mar 31 2020 21:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46918 * 2 1 4 4 C 1.52998 * 109.47006 * 239.99850 * 2 1 3 5 5 N 1.46900 * 109.46785 * 184.99783 * 4 2 1 6 6 C 1.46892 * 111.00484 * 293.95370 * 5 4 2 7 7 C 1.46904 * 110.99566 * 170.00204 * 5 4 2 8 8 H 1.09003 * 109.47528 * 60.15002 * 7 5 4 9 9 C 1.53001 * 109.46860 * 180.14523 * 7 5 4 10 10 C 1.50705 * 109.47197 * 300.14560 * 7 5 4 11 11 N 1.31793 * 119.12009 * 312.00772 * 10 7 5 12 12 C 1.32335 * 120.81452 * 179.75784 * 11 10 7 13 13 C 1.38599 * 119.10207 * 0.50824 * 12 11 10 14 14 C 1.38591 * 118.40270 * 359.74997 * 13 12 11 15 15 N 1.31791 * 119.11913 * 132.28004 * 10 7 5 16 16 N 1.46496 * 109.47121 * 119.99855 * 2 1 3 17 17 C 1.34779 * 120.00340 * 274.99960 * 16 2 1 18 18 O 1.21283 * 119.99925 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00136 * 179.97438 * 17 16 2 20 20 S 1.81001 * 109.47160 * 180.02562 * 19 17 16 21 21 C 1.76193 * 100.00018 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00535 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00007 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99823 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47314 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47105 * 119.99677 * 25 23 21 28 28 H 1.48497 * 109.47130 * 239.99744 * 25 23 21 29 29 H 1.09003 * 109.47562 * 59.99834 * 1 2 3 30 30 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47155 * 299.99799 * 1 2 3 32 32 H 1.09001 * 109.46607 * 65.00212 * 4 2 1 33 33 H 1.08996 * 109.47312 * 305.00408 * 4 2 1 34 34 H 1.09006 * 109.47260 * 290.61065 * 6 5 4 35 35 H 1.09002 * 109.46913 * 50.60259 * 6 5 4 36 36 H 1.08996 * 109.47368 * 170.60481 * 6 5 4 37 37 H 1.09003 * 109.47118 * 60.00213 * 9 7 5 38 38 H 1.09002 * 109.47076 * 179.97438 * 9 7 5 39 39 H 1.08993 * 109.47453 * 299.99912 * 9 7 5 40 40 H 1.07999 * 120.44736 * 180.28019 * 12 11 10 41 41 H 1.08000 * 120.79905 * 179.77012 * 13 12 11 42 42 H 1.07997 * 120.44910 * 180.02562 * 14 13 12 43 43 H 0.97006 * 120.00120 * 94.99580 * 16 2 1 44 44 H 1.09004 * 109.47023 * 300.00058 * 19 17 16 45 45 H 1.08997 * 109.47084 * 60.00134 * 19 17 16 46 46 H 0.97005 * 119.99806 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8266 -1.1904 6 6 4.1310 0.4993 -1.2720 7 6 4.0107 -1.7144 -2.2455 8 1 3.7300 -1.3167 -3.2208 9 6 5.5352 -1.8016 -2.1499 10 6 3.4170 -3.0889 -2.0735 11 7 3.4322 -3.6494 -0.8808 12 6 2.9160 -4.8530 -0.6909 13 6 2.3646 -5.5278 -1.7687 14 6 2.3719 -4.9079 -3.0082 15 7 2.9015 -3.7004 -3.1210 16 7 2.0183 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3572 18 8 1.8582 1.1584 2.4118 19 6 2.6489 -0.7288 3.5877 20 16 2.7092 0.4341 4.9735 21 6 3.3125 -0.6311 6.2407 22 1 3.5226 -1.6673 6.0206 23 6 3.5177 -0.1384 7.5220 24 7 3.2621 1.1247 7.7902 25 14 4.1566 -1.2679 8.8657 26 1 4.3640 -2.6296 8.3108 27 1 5.4462 -0.7428 9.3820 28 1 3.1684 -1.3290 9.9724 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7516 -0.1583 -2.1369 33 1 1.6053 -1.7198 -1.2952 34 1 3.9923 0.9057 -2.2738 35 1 3.6692 1.1650 -0.5428 36 1 5.1965 0.4110 -1.0599 37 1 5.8160 -2.1993 -1.1746 38 1 5.9111 -2.4607 -2.9325 39 1 5.9646 -0.8076 -2.2743 40 1 2.9275 -5.3049 0.2899 41 1 1.9392 -6.5128 -1.6455 42 1 1.9507 -5.4035 -3.8704 43 1 2.2490 -1.6318 1.1527 44 1 1.9759 -1.5506 3.8326 45 1 3.6479 -1.1213 3.3986 46 1 3.4059 1.4691 8.6856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275507250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:56 Heat of formation + Delta-G solvation = -4.008354 kcal Electronic energy + Delta-G solvation = -27184.773692 eV Core-core repulsion = 23428.161625 eV Total energy + Delta-G solvation = -3756.612068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06495 -40.75252 -39.05524 -36.35784 -34.59849 -34.56398 -33.61656 -32.58731 -30.97126 -29.90698 -28.36313 -27.63647 -26.16470 -25.45426 -24.68435 -22.50095 -21.62409 -21.27702 -19.80302 -18.49117 -18.07463 -17.87265 -17.36675 -16.86288 -16.79724 -16.35045 -16.28162 -16.00169 -15.81517 -15.41615 -15.16434 -14.68873 -14.56389 -14.38293 -14.28795 -14.03364 -13.89704 -13.42038 -13.29673 -13.15826 -13.12564 -13.03612 -12.89839 -12.62801 -12.57433 -12.47391 -12.31089 -11.76190 -11.72694 -11.66436 -11.58792 -11.13851 -10.83792 -10.42024 -10.24021 -10.10191 -9.98354 -9.31593 -8.63051 -8.32677 -6.09799 -0.03084 0.22858 1.29756 1.42320 1.49136 1.60724 1.72903 2.28415 2.37541 2.59146 2.86088 2.96576 3.01218 3.36252 3.42773 3.69884 3.82170 3.97115 4.04260 4.10330 4.18259 4.25545 4.27580 4.31299 4.36601 4.40008 4.42974 4.52312 4.55265 4.61968 4.65480 4.72184 4.77246 4.86140 4.94852 4.99565 5.10286 5.20528 5.27200 5.44070 5.49892 5.60223 5.97043 5.99393 6.15632 6.22276 6.63693 7.08616 7.21773 7.36338 8.76841 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013016 B = 0.002791 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.673634 B =10028.910609 C =10892.822780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.071 0.929 4 C 0.064 3.936 5 N -0.529 5.529 6 C 0.023 3.977 7 C 0.154 3.846 8 H 0.069 0.931 9 C -0.135 4.135 10 C 0.309 3.691 11 N -0.510 5.510 12 C 0.130 3.870 13 C -0.218 4.218 14 C 0.136 3.864 15 N -0.540 5.540 16 N -0.691 5.691 17 C 0.537 3.463 18 O -0.568 6.568 19 C -0.125 4.125 20 S -0.147 6.147 21 C -0.545 4.545 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.187 0.813 41 H 0.179 0.821 42 H 0.196 0.804 43 H 0.411 0.589 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -15.333 -26.802 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.064 4.064 5 N -0.254 5.254 6 C -0.124 4.124 7 C 0.044 3.956 8 H 0.087 0.913 9 C -0.193 4.193 10 C 0.041 3.959 11 N -0.224 5.224 12 C -0.036 4.036 13 C -0.239 4.239 14 C -0.030 4.030 15 N -0.254 5.254 16 N -0.343 5.343 17 C 0.323 3.677 18 O -0.447 6.447 19 C -0.277 4.277 20 S 0.080 5.920 21 C -0.693 4.693 22 H 0.098 0.902 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.198 1.198 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.204 0.796 41 H 0.197 0.803 42 H 0.213 0.787 43 H 0.247 0.753 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.146 -12.570 -26.299 29.171 hybrid contribution 0.114 -2.493 0.346 2.519 sum -1.032 -15.063 -25.953 30.025 Atomic orbital electron populations 1.22098 0.94375 1.02564 1.02503 1.20971 0.94088 0.96736 0.83819 0.91123 1.22245 0.88050 1.00228 0.95891 1.61826 1.04897 1.11912 1.46754 1.22461 1.00732 0.88660 1.00567 1.20272 0.95800 0.85989 0.93558 0.91325 1.21794 0.91772 1.03315 1.02431 1.22929 0.92004 0.96533 0.84475 1.68302 1.17057 1.11869 1.25161 1.23861 0.89316 0.89275 1.01138 1.23284 1.02018 1.04172 0.94475 1.23786 0.91070 0.89312 0.98796 1.68216 1.11626 1.11593 1.33995 1.45608 1.66554 1.14299 1.07816 1.19935 0.76718 0.86525 0.84558 1.90666 1.51262 1.17526 1.85294 1.23320 1.05020 1.03018 0.96304 1.85498 1.86605 1.17315 1.02557 1.23232 1.50731 0.98434 0.96854 0.90163 1.26127 0.95118 0.97226 1.00711 1.70196 1.46979 1.15465 1.22179 0.84906 0.77852 0.78223 0.76963 1.18080 1.19907 1.19849 0.89702 0.91640 0.94088 0.91963 0.91343 0.93762 0.92446 0.90345 0.92312 0.91752 0.90184 0.79630 0.80318 0.78689 0.75288 0.87926 0.87980 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.48 71.98 0.68 -2.85 16 2 C 0.15 3.68 2.37 44.99 0.11 3.79 16 3 H 0.07 2.05 6.04 -2.39 -0.01 2.04 16 4 C 0.06 1.25 4.35 86.30 0.38 1.63 16 5 N -0.53 -10.64 4.20 -901.47 -3.79 -14.43 16 6 C 0.02 0.46 8.83 127.69 1.13 1.58 16 7 C 0.15 2.80 2.46 44.17 0.11 2.90 16 8 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 9 C -0.13 -2.26 8.82 71.98 0.63 -1.62 16 10 C 0.31 5.93 4.89 138.75 0.68 6.60 16 11 N -0.51 -9.97 10.15 -187.84 -1.91 -11.88 16 12 C 0.13 1.77 11.31 84.70 0.96 2.73 16 13 C -0.22 -1.99 10.17 22.44 0.23 -1.76 16 14 C 0.14 1.53 11.30 84.70 0.96 2.48 16 15 N -0.54 -9.43 10.32 -187.85 -1.94 -11.37 16 16 N -0.69 -19.96 4.80 -442.54 -2.12 -22.09 16 17 C 0.54 21.14 7.81 87.66 0.68 21.82 16 18 O -0.57 -27.15 15.53 -3.04 -0.05 -27.19 16 19 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 20 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 21 C -0.54 -31.89 9.50 67.95 0.65 -31.24 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.74 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 25 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 33 H 0.07 1.37 6.75 -2.39 -0.02 1.36 16 34 H 0.04 0.69 8.13 -2.38 -0.02 0.67 16 35 H 0.06 1.38 6.20 -2.39 -0.01 1.36 16 36 H 0.08 1.47 6.57 -2.39 -0.02 1.46 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.15 6.47 -2.39 -0.02 1.13 16 40 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 42 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.41 10.62 8.60 -92.70 -0.80 9.82 16 44 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 45 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 46 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -79.87 394.89 -0.37 -80.25 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.19 Total: 24.06 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 8.09 Total: 2.39 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -9.47 Total: -116.33 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -79.87 -0.37 -80.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275507250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.238 kcal (2) G-P(sol) polarization free energy of solvation -79.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds