Wall clock time and date at job start Tue Mar 31 2020 21:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47279 * 2 1 4 4 C 1.50698 * 109.47286 * 239.99936 * 2 1 3 5 5 N 1.31801 * 119.11904 * 286.06766 * 4 2 1 6 6 C 1.32334 * 120.81338 * 179.75494 * 5 4 2 7 7 C 1.38598 * 119.10715 * 0.51319 * 6 5 4 8 8 C 1.38600 * 118.39872 * 359.74355 * 7 6 5 9 9 N 1.31791 * 119.12390 * 106.34162 * 4 2 1 10 10 N 1.46906 * 109.47055 * 119.99851 * 2 1 3 11 11 C 1.46901 * 111.00055 * 303.97900 * 10 2 1 12 12 C 1.46890 * 111.00187 * 180.02562 * 10 2 1 13 13 C 1.53001 * 109.47417 * 190.00141 * 12 10 2 14 14 H 1.09005 * 109.46943 * 295.00373 * 13 12 10 15 15 C 1.52996 * 109.47230 * 175.00013 * 13 12 10 16 16 N 1.46499 * 109.46872 * 54.99825 * 13 12 10 17 17 C 1.34781 * 120.00038 * 204.99881 * 16 13 12 18 18 O 1.21274 * 119.99702 * 0.02562 * 17 16 13 19 19 C 1.50694 * 119.99826 * 180.02562 * 17 16 13 20 20 S 1.81009 * 109.46941 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99984 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99871 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99907 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99935 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99924 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47677 * 89.99750 * 25 23 21 27 27 H 1.48500 * 109.46875 * 209.99956 * 25 23 21 28 28 H 1.48505 * 109.46932 * 329.99638 * 25 23 21 29 29 H 1.08998 * 109.47322 * 300.00523 * 1 2 3 30 30 H 1.08999 * 109.46885 * 60.00066 * 1 2 3 31 31 H 1.08996 * 109.47279 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.44535 * 180.23417 * 6 5 4 33 33 H 1.08000 * 120.80028 * 179.77300 * 7 6 5 34 34 H 1.07993 * 120.45019 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47267 * 65.87909 * 11 10 2 36 36 H 1.08997 * 109.47315 * 185.88737 * 11 10 2 37 37 H 1.09003 * 109.46902 * 305.88686 * 11 10 2 38 38 H 1.08999 * 109.47478 * 310.00298 * 12 10 2 39 39 H 1.09002 * 109.47336 * 70.00225 * 12 10 2 40 40 H 1.09006 * 109.47355 * 60.00559 * 15 13 12 41 41 H 1.09005 * 109.47068 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.47367 * 300.00019 * 15 13 12 43 43 H 0.96995 * 119.99849 * 25.00307 * 16 13 12 44 44 H 1.09003 * 109.47619 * 300.00121 * 19 17 16 45 45 H 1.09001 * 109.47351 * 60.00828 * 19 17 16 46 46 H 0.97000 * 119.99676 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.9457 -2.0241 -1.2929 6 6 2.3721 -2.6816 -2.3592 7 6 2.9245 -1.9711 -3.4132 8 6 3.0033 -0.5913 -3.3085 9 7 2.5516 -0.0020 -2.2130 10 7 2.0197 -0.6925 1.1995 11 6 1.4725 -0.0835 2.4192 12 6 3.4880 -0.7116 1.2338 13 6 3.9601 -1.6454 2.3501 14 1 3.6543 -1.2414 3.3153 15 6 5.4849 -1.7626 2.3063 16 7 3.3628 -2.9700 2.1639 17 6 3.2009 -3.7909 3.2205 18 8 3.5493 -3.4327 4.3255 19 6 2.5871 -5.1538 3.0287 20 16 2.5053 -6.0083 4.6223 21 6 1.7702 -7.5279 4.1173 22 1 1.5187 -7.6873 3.0792 23 6 1.5145 -8.5200 5.0537 24 7 0.9649 -9.6550 4.6765 25 14 1.9489 -8.2439 6.8493 26 1 0.7921 -7.6307 7.5500 27 1 2.2792 -9.5450 7.4844 28 1 3.1209 -7.3365 6.9412 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2947 -3.7579 -2.4056 33 1 3.2844 -2.4802 -4.2950 34 1 3.4280 -0.0050 -4.1098 35 1 0.3940 -0.2376 2.4499 36 1 1.9307 -0.5461 3.2934 37 1 1.6869 0.9852 2.4194 38 1 3.8693 -1.0677 0.2768 39 1 3.8603 0.2957 1.4210 40 1 5.9293 -0.7770 2.4450 41 1 5.8212 -2.4275 3.1019 42 1 5.7907 -2.1665 1.3412 43 1 3.0840 -3.2563 1.2801 44 1 1.5813 -5.0455 2.6229 45 1 3.1979 -5.7332 2.3364 46 1 0.7858 -10.3482 5.3309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275507251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:00 Heat of formation + Delta-G solvation = -3.388826 kcal Electronic energy + Delta-G solvation = -27230.989695 eV Core-core repulsion = 23474.404492 eV Total energy + Delta-G solvation = -3756.585203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06761 -40.78991 -39.06691 -36.37513 -34.65579 -34.60067 -33.62663 -32.61331 -30.98728 -29.96051 -28.35875 -27.82951 -26.16866 -25.45893 -24.68454 -22.54022 -21.63594 -21.28896 -19.85765 -18.49510 -18.07974 -17.92959 -17.40435 -17.05380 -16.79387 -16.36028 -16.31484 -15.97108 -15.77846 -15.41185 -15.15687 -14.95789 -14.66525 -14.39651 -14.29759 -14.12375 -13.91898 -13.46299 -13.34353 -13.29774 -13.17462 -13.04496 -12.98822 -12.63526 -12.59609 -12.46958 -12.31724 -11.84938 -11.76115 -11.69989 -11.59147 -11.15426 -10.89226 -10.50933 -10.42294 -10.10528 -10.00865 -9.31232 -8.96370 -8.49858 -6.19801 -0.03333 0.22261 1.01695 1.32570 1.48585 1.58488 1.67650 2.26008 2.32881 2.58009 2.75880 2.85546 2.88312 2.96569 3.42325 3.69770 3.81783 3.92117 4.03594 4.05713 4.17866 4.24005 4.25909 4.30405 4.32846 4.40321 4.42834 4.50999 4.52063 4.62557 4.65778 4.72189 4.77278 4.85970 4.94563 4.99185 5.10311 5.20870 5.26849 5.49432 5.57679 5.72723 5.97332 5.99184 6.13183 6.15354 6.59641 6.95377 7.21366 7.30639 8.62816 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.002791 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.712519 B =10029.121872 C =10669.125653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.154 3.846 3 H 0.069 0.931 4 C 0.308 3.692 5 N -0.510 5.510 6 C 0.129 3.871 7 C -0.218 4.218 8 C 0.136 3.864 9 N -0.539 5.539 10 N -0.529 5.529 11 C 0.023 3.977 12 C 0.063 3.937 13 C 0.150 3.850 14 H 0.074 0.926 15 C -0.157 4.157 16 N -0.690 5.690 17 C 0.538 3.462 18 O -0.565 6.565 19 C -0.108 4.108 20 S -0.171 6.171 21 C -0.528 4.528 22 H 0.060 0.940 23 C 0.045 3.955 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.196 0.804 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.412 0.588 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 23.993 -18.834 30.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 H 0.087 0.913 4 C 0.040 3.960 5 N -0.223 5.223 6 C -0.036 4.036 7 C -0.240 4.240 8 C -0.029 4.029 9 N -0.254 5.254 10 N -0.254 5.254 11 C -0.124 4.124 12 C -0.065 4.065 13 C 0.045 3.955 14 H 0.092 0.908 15 C -0.216 4.216 16 N -0.342 5.342 17 C 0.324 3.676 18 O -0.444 6.444 19 C -0.259 4.259 20 S 0.055 5.945 21 C -0.676 4.676 22 H 0.078 0.922 23 C -0.160 4.160 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.160 1.160 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.213 0.787 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.248 0.752 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.064 24.415 -16.209 29.740 hybrid contribution -0.109 -0.870 -1.837 2.036 sum 4.955 23.545 -18.047 30.076 Atomic orbital electron populations 1.21794 0.91799 1.02809 1.02935 1.20263 0.96531 0.94124 0.84649 0.91290 1.22957 0.91621 0.87211 0.94197 1.68310 1.17330 1.09962 1.26736 1.23853 0.89592 1.02354 0.87838 1.23282 1.01733 0.96525 1.02427 1.23783 0.91302 0.93419 0.94407 1.68212 1.12083 1.42429 1.02683 1.61820 1.07329 1.54551 1.01705 1.22467 1.01403 0.97353 0.91209 1.22254 0.87939 0.98319 0.98008 1.20990 0.93056 0.82371 0.99132 0.90798 1.22099 0.94356 1.03062 1.02043 1.45612 1.62577 1.15663 1.10368 1.19822 0.77626 0.85634 0.84556 1.90661 1.51604 1.76196 1.25977 1.23223 1.05090 0.96179 1.01370 1.84620 1.81734 1.15376 1.12732 1.22471 1.46200 1.01019 0.97866 0.92195 1.25568 0.93407 0.93736 1.03297 1.70020 1.42322 1.06432 1.36867 0.85857 0.81175 0.79541 0.79729 1.18688 1.18302 1.16043 0.90099 0.91788 0.92401 0.79754 0.80377 0.78676 0.90416 0.92221 0.93791 0.91428 0.91944 0.89718 0.93849 0.91759 0.75227 0.87604 0.87502 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.81 71.98 0.63 -1.58 16 2 C 0.15 2.72 2.46 44.17 0.11 2.83 16 3 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 4 C 0.31 5.84 4.93 138.75 0.68 6.52 16 5 N -0.51 -9.93 10.07 -187.84 -1.89 -11.82 16 6 C 0.13 1.80 11.30 84.70 0.96 2.76 16 7 C -0.22 -2.04 10.17 22.44 0.23 -1.81 16 8 C 0.14 1.53 11.31 84.70 0.96 2.49 16 9 N -0.54 -9.33 10.32 -187.84 -1.94 -11.27 16 10 N -0.53 -10.12 4.18 -901.49 -3.76 -13.88 16 11 C 0.02 0.42 8.82 127.69 1.13 1.55 16 12 C 0.06 1.16 4.36 86.31 0.38 1.53 16 13 C 0.15 3.42 2.38 44.99 0.11 3.53 16 14 H 0.07 1.97 6.03 -2.38 -0.01 1.95 16 15 C -0.16 -3.26 9.48 71.98 0.68 -2.58 16 16 N -0.69 -18.68 4.80 -442.54 -2.12 -20.81 16 17 C 0.54 19.66 7.81 87.65 0.68 20.34 16 18 O -0.57 -24.71 15.52 -3.01 -0.05 -24.76 16 19 C -0.11 -4.33 6.16 71.23 0.44 -3.89 16 20 S -0.17 -8.90 18.55 -56.49 -1.05 -9.95 16 21 C -0.53 -31.47 10.04 67.95 0.68 -30.79 16 22 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 23 C 0.05 2.69 5.50 84.86 0.47 3.16 16 24 N -0.92 -56.77 13.97 21.65 0.30 -56.47 16 25 Si 0.92 45.78 27.74 68.60 1.90 47.69 16 26 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.24 -11.82 6.74 99.48 0.67 -11.14 16 29 H 0.08 1.11 6.48 -2.39 -0.02 1.10 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 34 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.08 1.37 6.59 -2.39 -0.02 1.36 16 36 H 0.06 1.31 6.19 -2.39 -0.01 1.30 16 37 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 38 H 0.07 1.30 6.73 -2.39 -0.02 1.28 16 39 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 40 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.41 10.12 8.60 -92.71 -0.80 9.33 16 44 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 45 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 46 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -76.96 392.11 -0.32 -77.28 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.15 Total: 19.94 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 8.13 Total: 4.06 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -9.42 Total: -114.25 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.69 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -76.96 -0.32 -77.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275507251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.890 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds