Wall clock time and date at job start Tue Mar 31 2020 21:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 N 1.46905 * 109.46991 * 174.99948 * 4 2 1 6 6 C 1.46905 * 110.99887 * 66.04513 * 5 4 2 7 7 C 1.46898 * 111.00116 * 190.00154 * 5 4 2 8 8 H 1.08997 * 109.47351 * 300.00265 * 7 5 4 9 9 C 1.52997 * 109.47092 * 60.00258 * 7 5 4 10 10 C 1.50705 * 109.46936 * 179.97438 * 7 5 4 11 11 N 1.31794 * 119.12439 * 314.72965 * 10 7 5 12 12 C 1.32336 * 120.81615 * 179.75634 * 11 10 7 13 13 C 1.38595 * 119.10531 * 0.50875 * 12 11 10 14 14 C 1.38602 * 118.39996 * 359.74922 * 13 12 11 15 15 N 1.31790 * 119.11913 * 135.00112 * 10 7 5 16 16 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 17 17 C 1.34781 * 119.99920 * 84.99933 * 16 2 1 18 18 O 1.21274 * 119.99803 * 0.02562 * 17 16 2 19 19 C 1.50697 * 119.99747 * 180.02562 * 17 16 2 20 20 S 1.81008 * 109.47095 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00235 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99917 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00124 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99669 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99921 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47584 * 59.99721 * 25 23 21 27 27 H 1.48508 * 109.46887 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47236 * 299.99656 * 25 23 21 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 34 34 H 1.09002 * 109.46369 * 60.00474 * 6 5 4 35 35 H 1.08995 * 109.47254 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47184 * 300.00769 * 6 5 4 37 37 H 1.09002 * 109.47227 * 179.97438 * 9 7 5 38 38 H 1.09003 * 109.47012 * 299.99884 * 9 7 5 39 39 H 1.09005 * 109.47352 * 59.99886 * 9 7 5 40 40 H 1.08001 * 120.44306 * 180.27555 * 12 11 10 41 41 H 1.07999 * 120.80011 * 179.76821 * 13 12 11 42 42 H 1.07999 * 120.44833 * 180.02562 * 14 13 12 43 43 H 0.96998 * 120.00176 * 265.00572 * 16 2 1 44 44 H 1.09006 * 109.47530 * 299.99941 * 19 17 16 45 45 H 1.08998 * 109.47252 * 60.00349 * 19 17 16 46 46 H 0.97000 * 119.99547 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.1310 0.4993 1.2721 7 6 4.0107 -1.7144 2.2456 8 1 3.7277 -1.3181 3.2208 9 6 3.4108 -3.1107 2.0689 10 6 5.5126 -1.7981 2.1534 11 7 6.0742 -1.9696 0.9735 12 6 7.3900 -2.0429 0.8532 13 6 8.1772 -1.9474 1.9899 14 6 7.5500 -1.7726 3.2134 15 7 6.2291 -1.7032 3.2554 16 7 2.0184 -0.6906 -1.1961 17 6 2.1472 -0.0182 -2.3571 18 8 1.8591 1.1586 -2.4114 19 6 2.6490 -0.7288 -3.5876 20 16 2.7108 0.4344 -4.9730 21 6 3.3124 -0.6312 -6.2407 22 1 3.5211 -1.6678 -6.0209 23 6 3.5192 -0.1382 -7.5216 24 7 3.2653 1.1253 -7.7894 25 14 4.1564 -1.2681 -8.8657 26 1 3.2034 -2.3898 -9.0625 27 1 4.2897 -0.5044 -10.1324 28 1 5.4821 -1.8084 -8.4710 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.8524 0.9757 2.2120 35 1 5.2148 0.3922 1.2268 36 1 3.7911 1.1139 0.4385 37 1 3.7871 -3.7695 2.8515 38 1 2.3245 -3.0505 2.1353 39 1 3.6938 -3.5070 1.0937 40 1 7.8441 -2.1790 -0.1172 41 1 9.2535 -2.0074 1.9238 42 1 8.1313 -1.6938 4.1202 43 1 2.2491 -1.6317 -1.1525 44 1 3.6482 -1.1214 -3.3985 45 1 1.9761 -1.5506 -3.8325 46 1 3.4094 1.4697 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275507252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:04 Heat of formation + Delta-G solvation = 23.702518 kcal Electronic energy + Delta-G solvation = -26943.782181 eV Core-core repulsion = 23188.371747 eV Total energy + Delta-G solvation = -3755.410434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42369 -39.44682 -38.04511 -35.13369 -33.96147 -32.75406 -32.35857 -31.18175 -30.66933 -28.39630 -27.26163 -25.41015 -25.26020 -24.84547 -24.10127 -21.55431 -20.67573 -19.98154 -17.89652 -17.72134 -17.33335 -16.44790 -16.14594 -15.92389 -15.57295 -15.16527 -14.90264 -14.74408 -14.56700 -14.42334 -14.07284 -13.79460 -13.67278 -13.10996 -13.05909 -12.67993 -12.65719 -12.58598 -12.39924 -11.95044 -11.86717 -11.79512 -11.65664 -11.47886 -11.07007 -10.98918 -10.96983 -10.93154 -10.72857 -10.69061 -9.83695 -9.73924 -9.45013 -9.19562 -8.99366 -8.64036 -8.52336 -8.13407 -6.40326 -6.14659 -3.83696 0.56900 0.81911 3.15401 3.24615 3.27748 3.32070 3.32456 3.40040 3.48939 3.65622 3.90164 4.07056 4.27908 4.30769 4.58761 4.65300 4.75917 4.80964 4.88014 5.01739 5.08035 5.16740 5.20170 5.26567 5.29119 5.36157 5.40451 5.42811 5.46530 5.51012 5.64177 5.67943 5.81586 5.85538 5.93965 6.05748 6.07294 6.11580 6.24052 6.31174 6.66733 6.76143 6.79285 6.95690 7.66409 7.85520 8.00137 8.42394 8.85183 9.30575 10.92774 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.002878 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.843355 B = 9726.947626 C =11501.914695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.085 0.915 4 C 0.043 3.957 5 N -0.516 5.516 6 C 0.028 3.972 7 C 0.151 3.849 8 H 0.066 0.934 9 C -0.143 4.143 10 C 0.325 3.675 11 N -0.481 5.481 12 C 0.148 3.852 13 C -0.233 4.233 14 C 0.144 3.856 15 N -0.522 5.522 16 N -0.716 5.716 17 C 0.535 3.465 18 O -0.527 6.527 19 C -0.150 4.150 20 S -0.063 6.063 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.400 0.600 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -8.890 25.724 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.085 4.085 5 N -0.240 5.240 6 C -0.120 4.120 7 C 0.041 3.959 8 H 0.083 0.917 9 C -0.201 4.201 10 C 0.057 3.943 11 N -0.194 5.194 12 C -0.018 4.018 13 C -0.255 4.255 14 C -0.022 4.022 15 N -0.236 5.236 16 N -0.369 5.369 17 C 0.321 3.679 18 O -0.402 6.402 19 C -0.301 4.301 20 S 0.164 5.836 21 C -0.681 4.681 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.505 5.505 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.187 0.813 41 H 0.165 0.835 42 H 0.184 0.816 43 H 0.235 0.765 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.317 -6.932 25.115 26.264 hybrid contribution 1.918 -2.194 -0.042 2.914 sum 5.235 -9.125 25.073 27.191 Atomic orbital electron populations 1.22168 0.95226 1.02096 1.02694 1.20804 0.93403 0.97500 0.83933 0.89699 1.22595 0.87259 1.01640 0.97025 1.61872 1.05075 1.11435 1.45637 1.22386 0.99462 0.89606 1.00594 1.20253 0.85772 0.95657 0.94216 0.91655 1.21888 1.00965 0.93892 1.03346 1.22914 0.97023 0.90628 0.83778 1.68371 1.12113 1.11639 1.27231 1.23436 0.89250 0.89736 0.99415 1.22963 1.03105 1.04193 0.95235 1.23176 0.90282 0.90665 0.98064 1.68188 1.07867 1.14781 1.32761 1.45787 1.68450 1.14020 1.08653 1.20207 0.76701 0.87123 0.83862 1.90675 1.49048 1.15854 1.84657 1.23501 1.03700 1.04579 0.98337 1.85339 1.86290 1.13132 0.98834 1.22843 1.50766 0.98115 0.96411 0.91053 1.24978 0.95210 0.95500 0.97922 1.70015 1.45744 1.13201 1.21492 0.86248 0.79317 0.80060 0.80006 1.19979 1.20891 1.19974 0.92477 0.92118 0.91348 0.93378 0.89456 0.95760 0.92317 0.90208 0.92157 0.91122 0.90595 0.81281 0.83543 0.81626 0.76537 0.89240 0.89555 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 2 C 0.15 1.77 2.35 -67.93 -0.16 1.62 16 3 H 0.09 1.20 6.23 -51.93 -0.32 0.88 16 4 C 0.04 0.39 4.33 -3.82 -0.02 0.37 16 5 N -0.52 -5.41 4.17 -236.28 -0.98 -6.40 16 6 C 0.03 0.32 9.03 60.07 0.54 0.86 16 7 C 0.15 1.46 2.47 -68.86 -0.17 1.29 16 8 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 9 C -0.14 -1.15 8.97 37.16 0.33 -0.81 16 10 C 0.32 3.55 4.98 -157.20 -0.78 2.77 16 11 N -0.48 -5.58 9.70 -10.72 -0.10 -5.68 16 12 C 0.15 1.34 11.30 -17.20 -0.19 1.15 16 13 C -0.23 -1.61 10.17 -39.32 -0.40 -2.01 16 14 C 0.14 1.11 11.31 -17.20 -0.19 0.91 16 15 N -0.52 -5.38 10.32 -10.72 -0.11 -5.49 16 16 N -0.72 -10.02 4.80 -53.81 -0.26 -10.28 16 17 C 0.53 10.29 7.81 -10.98 -0.09 10.20 16 18 O -0.53 -12.13 15.52 5.56 0.09 -12.05 16 19 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 20 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 21 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.62 13.22 55.49 0.73 -25.88 16 25 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.39 8.12 -51.93 -0.42 -0.04 16 33 H 0.09 0.66 5.83 -51.93 -0.30 0.36 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 36 H 0.08 1.07 6.58 -51.93 -0.34 0.73 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.46 6.20 -51.93 -0.32 0.13 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.40 4.87 8.60 -40.82 -0.35 4.51 16 44 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -36.28 394.19 -9.31 -45.59 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.02 Total: 2.69 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.36 Total: -1.20 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.72 Total: -53.73 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.28 -9.31 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275507252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.290 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds