Wall clock time and date at job start Tue Mar 31 2020 21:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 N 1.46905 * 109.46991 * 174.99948 * 4 2 1 6 6 C 1.46905 * 110.99887 * 66.04513 * 5 4 2 7 7 C 1.46898 * 111.00116 * 190.00154 * 5 4 2 8 8 H 1.08997 * 109.47351 * 300.00265 * 7 5 4 9 9 C 1.52997 * 109.47092 * 60.00258 * 7 5 4 10 10 C 1.50705 * 109.46936 * 179.97438 * 7 5 4 11 11 N 1.31794 * 119.12439 * 314.72965 * 10 7 5 12 12 C 1.32336 * 120.81615 * 179.75634 * 11 10 7 13 13 C 1.38595 * 119.10531 * 0.50875 * 12 11 10 14 14 C 1.38602 * 118.39996 * 359.74922 * 13 12 11 15 15 N 1.31790 * 119.11913 * 135.00112 * 10 7 5 16 16 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 17 17 C 1.34781 * 119.99920 * 84.99933 * 16 2 1 18 18 O 1.21274 * 119.99803 * 0.02562 * 17 16 2 19 19 C 1.50697 * 119.99747 * 180.02562 * 17 16 2 20 20 S 1.81008 * 109.47095 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00235 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99917 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00124 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99669 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99921 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47584 * 59.99721 * 25 23 21 27 27 H 1.48508 * 109.46887 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47236 * 299.99656 * 25 23 21 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 34 34 H 1.09002 * 109.46369 * 60.00474 * 6 5 4 35 35 H 1.08995 * 109.47254 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47184 * 300.00769 * 6 5 4 37 37 H 1.09002 * 109.47227 * 179.97438 * 9 7 5 38 38 H 1.09003 * 109.47012 * 299.99884 * 9 7 5 39 39 H 1.09005 * 109.47352 * 59.99886 * 9 7 5 40 40 H 1.08001 * 120.44306 * 180.27555 * 12 11 10 41 41 H 1.07999 * 120.80011 * 179.76821 * 13 12 11 42 42 H 1.07999 * 120.44833 * 180.02562 * 14 13 12 43 43 H 0.96998 * 120.00176 * 265.00572 * 16 2 1 44 44 H 1.09006 * 109.47530 * 299.99941 * 19 17 16 45 45 H 1.08998 * 109.47252 * 60.00349 * 19 17 16 46 46 H 0.97000 * 119.99547 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.1310 0.4993 1.2721 7 6 4.0107 -1.7144 2.2456 8 1 3.7277 -1.3181 3.2208 9 6 3.4108 -3.1107 2.0689 10 6 5.5126 -1.7981 2.1534 11 7 6.0742 -1.9696 0.9735 12 6 7.3900 -2.0429 0.8532 13 6 8.1772 -1.9474 1.9899 14 6 7.5500 -1.7726 3.2134 15 7 6.2291 -1.7032 3.2554 16 7 2.0184 -0.6906 -1.1961 17 6 2.1472 -0.0182 -2.3571 18 8 1.8591 1.1586 -2.4114 19 6 2.6490 -0.7288 -3.5876 20 16 2.7108 0.4344 -4.9730 21 6 3.3124 -0.6312 -6.2407 22 1 3.5211 -1.6678 -6.0209 23 6 3.5192 -0.1382 -7.5216 24 7 3.2653 1.1253 -7.7894 25 14 4.1564 -1.2681 -8.8657 26 1 3.2034 -2.3898 -9.0625 27 1 4.2897 -0.5044 -10.1324 28 1 5.4821 -1.8084 -8.4710 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.8524 0.9757 2.2120 35 1 5.2148 0.3922 1.2268 36 1 3.7911 1.1139 0.4385 37 1 3.7871 -3.7695 2.8515 38 1 2.3245 -3.0505 2.1353 39 1 3.6938 -3.5070 1.0937 40 1 7.8441 -2.1790 -0.1172 41 1 9.2535 -2.0074 1.9238 42 1 8.1313 -1.6938 4.1202 43 1 2.2491 -1.6317 -1.1525 44 1 3.6482 -1.1214 -3.3985 45 1 1.9761 -1.5506 -3.8325 46 1 3.4094 1.4697 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275507252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:03 Heat of formation + Delta-G solvation = -3.343632 kcal Electronic energy + Delta-G solvation = -26944.954990 eV Core-core repulsion = 23188.371747 eV Total energy + Delta-G solvation = -3756.583243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08416 -40.74239 -39.06372 -36.25418 -34.63473 -34.56627 -33.61237 -32.39025 -31.37037 -29.92308 -28.08778 -27.63278 -25.98457 -25.49526 -24.89921 -22.56010 -21.65149 -21.17922 -19.80203 -18.54301 -18.04911 -17.83007 -17.21184 -16.86100 -16.83738 -16.29292 -16.26347 -16.09646 -15.73097 -15.48172 -15.27007 -14.70556 -14.59573 -14.41905 -14.32070 -13.95826 -13.86133 -13.39795 -13.28796 -13.18499 -13.13815 -12.86036 -12.83926 -12.70705 -12.57430 -12.45295 -12.30994 -11.77963 -11.72957 -11.62090 -11.57957 -11.11126 -10.81033 -10.44759 -10.24509 -10.13652 -9.93606 -9.31812 -8.63224 -8.32424 -6.09860 -0.06028 0.18781 1.29756 1.44694 1.48594 1.59752 1.76015 2.29151 2.40530 2.57733 2.84900 2.97046 3.01204 3.36661 3.42179 3.76607 3.77657 3.94826 4.08783 4.15210 4.18374 4.22021 4.27117 4.31914 4.35124 4.41671 4.46532 4.51461 4.56545 4.62302 4.68527 4.79732 4.83820 4.89805 4.89884 5.00027 5.11970 5.28839 5.33135 5.43223 5.46902 5.65380 5.95281 6.00013 6.13309 6.21716 6.69079 7.08454 7.18512 7.41282 8.76676 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.002878 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.843355 B = 9726.947626 C =11501.914695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.058 0.942 4 C 0.051 3.949 5 N -0.526 5.526 6 C 0.039 3.961 7 C 0.153 3.847 8 H 0.070 0.930 9 C -0.136 4.136 10 C 0.307 3.693 11 N -0.513 5.513 12 C 0.126 3.874 13 C -0.220 4.220 14 C 0.136 3.864 15 N -0.540 5.540 16 N -0.690 5.690 17 C 0.536 3.464 18 O -0.572 6.572 19 C -0.126 4.126 20 S -0.150 6.150 21 C -0.546 4.546 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.199 0.801 43 H 0.413 0.587 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -11.520 27.386 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.077 0.923 4 C -0.077 4.077 5 N -0.251 5.251 6 C -0.110 4.110 7 C 0.043 3.957 8 H 0.088 0.912 9 C -0.194 4.194 10 C 0.039 3.961 11 N -0.227 5.227 12 C -0.039 4.039 13 C -0.241 4.241 14 C -0.029 4.029 15 N -0.255 5.255 16 N -0.342 5.342 17 C 0.322 3.678 18 O -0.451 6.451 19 C -0.277 4.277 20 S 0.077 5.923 21 C -0.694 4.694 22 H 0.098 0.902 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.199 0.801 41 H 0.198 0.802 42 H 0.216 0.784 43 H 0.250 0.750 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.966 -9.607 26.827 28.770 hybrid contribution 1.773 -1.387 -0.403 2.287 sum 5.739 -10.994 26.424 29.189 Atomic orbital electron populations 1.22102 0.93885 1.03293 1.02236 1.20986 0.94370 0.96417 0.83972 0.92338 1.22579 0.86443 1.02869 0.95770 1.61817 1.05805 1.10765 1.46687 1.22179 0.98512 0.90226 1.00059 1.20308 0.85516 0.96078 0.93821 0.91224 1.21844 1.02068 0.92821 1.02625 1.23094 0.97660 0.91403 0.83921 1.68319 1.13545 1.12896 1.27915 1.23819 0.89014 0.90144 1.00948 1.23283 1.04576 1.02117 0.94133 1.23815 0.89787 0.89669 0.99675 1.68214 1.09196 1.15442 1.32646 1.45584 1.66519 1.14385 1.07759 1.19919 0.76708 0.86501 0.84696 1.90663 1.51391 1.17680 1.85358 1.23333 1.05013 1.03046 0.96330 1.85505 1.86681 1.17412 1.02686 1.23171 1.50944 0.98388 0.96908 0.90152 1.26128 0.95092 0.97223 1.00711 1.70184 1.46909 1.15482 1.22271 0.85013 0.79100 0.77762 0.76171 1.18635 1.20313 1.18660 0.90381 0.89653 0.94763 0.91367 0.86974 0.94645 0.93872 0.92645 0.91784 0.89116 0.91997 0.80092 0.80232 0.78431 0.75003 0.88114 0.87672 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.48 71.98 0.68 -2.45 16 2 C 0.15 3.36 2.35 44.99 0.11 3.46 16 3 H 0.06 1.69 6.23 -2.39 -0.01 1.68 16 4 C 0.05 0.79 4.33 86.30 0.37 1.17 16 5 N -0.53 -10.42 4.17 -901.45 -3.75 -14.17 16 6 C 0.04 0.91 9.03 127.69 1.15 2.06 16 7 C 0.15 2.71 2.47 44.17 0.11 2.82 16 8 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 9 C -0.14 -1.88 8.97 71.98 0.65 -1.24 16 10 C 0.31 6.49 4.98 138.75 0.69 7.18 16 11 N -0.51 -11.74 9.70 -187.84 -1.82 -13.56 16 12 C 0.13 2.19 11.30 84.70 0.96 3.15 16 13 C -0.22 -2.61 10.17 22.44 0.23 -2.38 16 14 C 0.14 1.82 11.31 84.70 0.96 2.78 16 15 N -0.54 -10.49 10.32 -187.84 -1.94 -12.43 16 16 N -0.69 -18.80 4.80 -442.55 -2.12 -20.92 16 17 C 0.54 20.93 7.81 87.66 0.68 21.61 16 18 O -0.57 -27.46 15.52 -3.01 -0.05 -27.51 16 19 C -0.13 -5.33 6.16 71.23 0.44 -4.89 16 20 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 21 C -0.55 -32.11 9.50 67.95 0.65 -31.46 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -57.13 13.22 21.65 0.29 -56.84 16 25 Si 1.00 44.43 29.55 68.60 2.03 46.46 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.11 1.24 5.83 -2.39 -0.01 1.23 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 1.13 6.54 -2.39 -0.02 1.12 16 36 H 0.05 1.55 6.58 -2.39 -0.02 1.54 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 0.85 6.20 -2.39 -0.01 0.84 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 42 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.41 9.27 8.60 -92.71 -0.80 8.47 16 44 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 45 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -83.01 394.19 -0.20 -83.21 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.19 Total: 22.52 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 8.14 Total: 3.02 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -9.35 Total: -117.92 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -83.01 -0.20 -83.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275507252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.870 kcal (2) G-P(sol) polarization free energy of solvation -83.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds