Wall clock time and date at job start Tue Mar 31 2020 21:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47143 * 2 1 4 4 C 1.52993 * 109.47457 * 239.99542 * 2 1 3 5 5 N 1.46906 * 109.47378 * 184.99997 * 4 2 1 6 6 C 1.46897 * 110.99771 * 293.95638 * 5 4 2 7 7 C 1.46898 * 110.99890 * 170.00285 * 5 4 2 8 8 H 1.08994 * 109.47696 * 60.00113 * 7 5 4 9 9 C 1.53004 * 109.47047 * 299.99705 * 7 5 4 10 10 C 1.50697 * 109.47160 * 180.02562 * 7 5 4 11 11 N 1.31794 * 119.12201 * 44.72495 * 10 7 5 12 12 C 1.32342 * 120.82040 * 179.76547 * 11 10 7 13 13 C 1.38599 * 119.09879 * 0.50088 * 12 11 10 14 14 C 1.38599 * 118.40279 * 359.75541 * 13 12 11 15 15 N 1.31794 * 119.12429 * 224.99807 * 10 7 5 16 16 N 1.46501 * 109.46955 * 119.99766 * 2 1 3 17 17 C 1.34779 * 120.00080 * 275.00117 * 16 2 1 18 18 O 1.21278 * 119.99829 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00123 * 180.02562 * 17 16 2 20 20 S 1.81005 * 109.47246 * 180.02562 * 19 17 16 21 21 C 1.76196 * 100.00003 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00336 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99814 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00219 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47287 * 89.99680 * 25 23 21 27 27 H 1.48491 * 109.47111 * 209.99804 * 25 23 21 28 28 H 1.48503 * 109.47076 * 329.99910 * 25 23 21 29 29 H 1.09001 * 109.47387 * 300.00082 * 1 2 3 30 30 H 1.08993 * 109.46808 * 60.00545 * 1 2 3 31 31 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46862 * 65.00100 * 4 2 1 33 33 H 1.09000 * 109.47250 * 305.00123 * 4 2 1 34 34 H 1.08997 * 109.47293 * 60.00221 * 6 5 4 35 35 H 1.09000 * 109.46769 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47106 * 299.99134 * 6 5 4 37 37 H 1.08995 * 109.47869 * 300.00355 * 9 7 5 38 38 H 1.09002 * 109.46926 * 60.00601 * 9 7 5 39 39 H 1.09008 * 109.46817 * 180.02562 * 9 7 5 40 40 H 1.07993 * 120.44972 * 180.23881 * 12 11 10 41 41 H 1.08001 * 120.79600 * 179.77528 * 13 12 11 42 42 H 1.07998 * 120.44471 * 179.97438 * 14 13 12 43 43 H 0.96998 * 120.00221 * 95.00085 * 16 2 1 44 44 H 1.09006 * 109.46803 * 299.99777 * 19 17 16 45 45 H 1.08995 * 109.47336 * 59.99881 * 19 17 16 46 46 H 0.96995 * 119.99573 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.1310 0.4993 -1.2718 7 6 4.0108 -1.7144 -2.2453 8 1 3.7280 -1.3183 -3.2205 9 6 3.4110 -3.1108 -2.0685 10 6 5.5127 -1.7981 -2.1530 11 7 6.0747 -1.9587 -0.9718 12 6 7.3902 -2.0410 -0.8524 13 6 8.1774 -1.9456 -1.9891 14 6 7.5502 -1.7719 -3.2128 15 7 6.2293 -1.7034 -3.2550 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8590 1.1587 2.4115 19 6 2.6498 -0.7284 3.5876 20 16 2.7098 0.4345 4.9734 21 6 3.3130 -0.6307 6.2407 22 1 3.5224 -1.6670 6.0208 23 6 3.5189 -0.1377 7.5218 24 7 3.9691 -0.9336 8.4687 25 14 3.1560 1.6547 7.9024 26 1 1.7451 1.7909 8.3450 27 1 4.0609 2.1245 8.9820 28 1 3.3734 2.4736 6.6828 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1584 -2.1369 33 1 1.6055 -1.7199 -1.2950 34 1 3.7911 1.1138 -0.4383 35 1 5.2148 0.3922 -1.2255 36 1 3.8526 0.9756 -2.2119 37 1 3.6939 -3.5071 -1.0933 38 1 2.3247 -3.0507 -2.1350 39 1 3.7874 -3.7697 -2.8511 40 1 7.8443 -2.1765 0.1180 41 1 9.2538 -2.0055 -1.9229 42 1 8.1316 -1.6931 -4.1195 43 1 2.2490 -1.6317 1.1527 44 1 1.9775 -1.5507 3.8326 45 1 3.6491 -1.1202 3.3981 46 1 4.1127 -0.5892 9.3640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275507253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:07 Heat of formation + Delta-G solvation = 23.862188 kcal Electronic energy + Delta-G solvation = -26990.425337 eV Core-core repulsion = 23235.021826 eV Total energy + Delta-G solvation = -3755.403510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43701 -39.54082 -38.11543 -35.21221 -33.97188 -32.79326 -32.37386 -31.27400 -30.69751 -28.53619 -27.30685 -25.54493 -25.28447 -24.85867 -24.13831 -21.62019 -20.73477 -20.07824 -17.92057 -17.74565 -17.34806 -16.53855 -16.20095 -15.96720 -15.60753 -15.20752 -14.97411 -14.91211 -14.60482 -14.48403 -14.07909 -13.77820 -13.65545 -13.23034 -13.10134 -12.77504 -12.71370 -12.63654 -12.57391 -12.03138 -11.92074 -11.87342 -11.71380 -11.54096 -11.19800 -11.07626 -10.96128 -10.94899 -10.78104 -10.50063 -9.84932 -9.79569 -9.46153 -9.32914 -8.94478 -8.73980 -8.56399 -8.40473 -6.82625 -6.22896 -3.92949 0.55785 0.80845 2.89025 3.16554 3.23094 3.37073 3.44134 3.47621 3.55582 3.63885 3.81897 4.04466 4.30053 4.38944 4.55339 4.62050 4.74475 4.79976 4.84137 4.86598 4.98563 5.06414 5.12910 5.16249 5.21546 5.28435 5.32532 5.40433 5.43282 5.47236 5.49466 5.62887 5.68492 5.81096 5.91724 5.92850 6.03042 6.06151 6.16527 6.19374 6.63728 6.72199 6.75220 6.87720 7.84257 7.89117 8.00681 8.48747 8.71928 9.23786 10.86523 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.002896 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.375136 B = 9666.191128 C =11214.613342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.085 0.915 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.028 3.972 7 C 0.151 3.849 8 H 0.066 0.934 9 C -0.143 4.143 10 C 0.324 3.676 11 N -0.481 5.481 12 C 0.148 3.852 13 C -0.233 4.233 14 C 0.144 3.856 15 N -0.522 5.522 16 N -0.714 5.714 17 C 0.534 3.466 18 O -0.529 6.529 19 C -0.121 4.121 20 S -0.145 6.145 21 C -0.518 4.518 22 H 0.088 0.912 23 C 0.094 3.906 24 N -0.883 5.883 25 Si 0.857 3.143 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.402 0.598 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -4.377 -27.783 28.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.086 4.086 5 N -0.240 5.240 6 C -0.120 4.120 7 C 0.041 3.959 8 H 0.084 0.916 9 C -0.201 4.201 10 C 0.056 3.944 11 N -0.194 5.194 12 C -0.018 4.018 13 C -0.255 4.255 14 C -0.022 4.022 15 N -0.236 5.236 16 N -0.367 5.367 17 C 0.320 3.680 18 O -0.405 6.405 19 C -0.272 4.272 20 S 0.081 5.919 21 C -0.665 4.665 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.520 5.520 25 Si 0.682 3.318 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.159 1.159 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.188 0.812 41 H 0.165 0.835 42 H 0.184 0.816 43 H 0.236 0.764 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.793 -2.585 -27.123 27.304 hybrid contribution 1.436 -0.879 -0.371 1.724 sum 3.229 -3.464 -27.494 27.898 Atomic orbital electron populations 1.22165 0.95148 1.02183 1.02695 1.20819 0.93445 0.97477 0.83873 0.89682 1.22595 0.87321 1.01688 0.96954 1.61869 1.05019 1.11414 1.45724 1.22383 0.99523 0.89604 1.00539 1.20250 0.85802 0.95645 0.94173 0.91645 1.21891 1.00950 0.93876 1.03398 1.22907 0.97004 0.90716 0.83784 1.68372 1.12132 1.11629 1.27224 1.23446 0.89244 0.89677 0.99449 1.22969 1.03122 1.04144 0.95225 1.23175 0.90277 0.90675 0.98062 1.68185 1.07875 1.14749 1.32794 1.45754 1.68223 1.14115 1.08590 1.20185 0.76785 0.87121 0.83948 1.90673 1.49262 1.15837 1.84702 1.23251 1.04522 1.03169 0.96212 1.84733 1.87101 1.16860 1.03182 1.22339 1.50204 0.98729 0.95266 0.89441 1.24715 0.93465 0.98216 0.94985 1.69946 1.43798 1.35747 1.02472 0.86732 0.79224 0.85395 0.80485 1.19282 1.20070 1.15914 0.91391 0.92063 0.92391 0.93331 0.89385 0.90299 0.92270 0.95752 0.90567 0.91127 0.92113 0.81239 0.83523 0.81622 0.76357 0.88821 0.88466 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.15 1.68 2.35 -67.93 -0.16 1.52 16 3 H 0.09 1.14 6.23 -51.93 -0.32 0.82 16 4 C 0.04 0.36 4.33 -3.82 -0.02 0.35 16 5 N -0.52 -5.20 4.16 -236.29 -0.98 -6.19 16 6 C 0.03 0.31 9.03 60.06 0.54 0.85 16 7 C 0.15 1.42 2.48 -68.87 -0.17 1.25 16 8 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 9 C -0.14 -1.12 8.97 37.16 0.33 -0.79 16 10 C 0.32 3.48 5.00 -157.20 -0.79 2.69 16 11 N -0.48 -5.49 9.65 -10.73 -0.10 -5.60 16 12 C 0.15 1.33 11.31 -17.20 -0.19 1.13 16 13 C -0.23 -1.59 10.17 -39.32 -0.40 -1.99 16 14 C 0.14 1.09 11.31 -17.20 -0.19 0.89 16 15 N -0.52 -5.30 10.32 -10.73 -0.11 -5.41 16 16 N -0.71 -9.47 4.80 -53.81 -0.26 -9.73 16 17 C 0.53 9.72 7.81 -10.98 -0.09 9.63 16 18 O -0.53 -11.52 15.52 5.56 0.09 -11.44 16 19 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 20 S -0.15 -3.76 18.55 -107.50 -1.99 -5.76 16 21 C -0.52 -15.19 10.04 30.94 0.31 -14.88 16 22 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 23 C 0.09 2.81 5.50 -17.43 -0.10 2.71 16 24 N -0.88 -27.02 13.97 55.49 0.78 -26.25 16 25 Si 0.86 22.17 27.74 -169.99 -4.72 17.45 16 26 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.24 -6.09 6.74 56.52 0.38 -5.70 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.09 0.63 5.83 -51.93 -0.30 0.32 16 34 H 0.08 1.01 6.58 -51.93 -0.34 0.67 16 35 H 0.06 0.73 6.52 -51.93 -0.34 0.40 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 39 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.40 4.63 8.60 -40.82 -0.35 4.28 16 44 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 45 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 46 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -35.92 391.44 -8.80 -44.72 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.05 Total: 2.44 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.34 Total: -0.15 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.68 Total: -53.17 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.45 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.92 -8.80 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275507253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.582 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds