Wall clock time and date at job start Tue Mar 31 2020 21:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47297 * 2 1 4 4 N 1.46906 * 109.46927 * 119.99859 * 2 1 3 5 5 C 1.46900 * 111.00156 * 205.35777 * 4 2 1 6 6 H 1.09004 * 109.46880 * 317.01742 * 5 4 2 7 7 C 1.52996 * 109.46922 * 77.00985 * 5 4 2 8 8 C 1.52996 * 109.47494 * 197.01500 * 5 4 2 9 9 N 1.46499 * 109.47157 * 54.99469 * 8 5 4 10 10 C 1.46498 * 119.99780 * 90.00480 * 9 8 5 11 11 C 1.34776 * 120.00191 * 270.00436 * 9 8 5 12 12 O 1.21275 * 120.00299 * 0.02562 * 11 9 8 13 13 C 1.50702 * 119.99771 * 179.97438 * 11 9 8 14 14 S 1.80993 * 109.46998 * 179.97438 * 13 11 9 15 15 C 1.76201 * 99.99970 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99967 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00201 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46864 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47213 * 119.99659 * 19 17 15 22 22 H 1.48490 * 109.47504 * 239.99988 * 19 17 15 23 23 C 1.50699 * 109.47345 * 239.99546 * 2 1 3 24 24 C 1.38386 * 119.99736 * 85.02158 * 23 2 1 25 25 N 1.32130 * 119.99761 * 179.72352 * 24 23 2 26 26 C 1.32150 * 119.99595 * 0.51239 * 25 24 23 27 27 C 1.38342 * 120.00293 * 359.48921 * 26 25 24 28 28 N 1.32125 * 120.00373 * 265.00524 * 23 2 1 29 29 H 1.09003 * 109.47266 * 55.10242 * 1 2 3 30 30 H 1.09000 * 109.47086 * 175.09915 * 1 2 3 31 31 H 1.08999 * 109.47471 * 295.09901 * 1 2 3 32 32 H 1.00901 * 111.00193 * 81.40557 * 4 2 1 33 33 H 1.08998 * 109.47071 * 54.74528 * 7 5 4 34 34 H 1.09000 * 109.47168 * 174.74065 * 7 5 4 35 35 H 1.08995 * 109.47668 * 294.74206 * 7 5 4 36 36 H 1.08996 * 109.47478 * 175.00467 * 8 5 4 37 37 H 1.09001 * 109.46600 * 295.00318 * 8 5 4 38 38 H 1.08996 * 109.47248 * 89.99595 * 10 9 8 39 39 H 1.09005 * 109.47492 * 210.00273 * 10 9 8 40 40 H 1.09007 * 109.47321 * 330.00024 * 10 9 8 41 41 H 1.09002 * 109.47241 * 300.00270 * 13 11 9 42 42 H 1.09005 * 109.47225 * 60.00116 * 13 11 9 43 43 H 0.97007 * 120.00498 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.00565 * 359.97438 * 24 23 2 45 45 H 1.08007 * 119.99668 * 179.76962 * 26 25 24 46 46 H 1.08004 * 119.99498 * 180.27909 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3635 -0.2255 1.5653 6 1 3.9744 -0.1370 0.6669 7 6 3.2606 1.1396 2.2485 8 6 4.0086 -1.2283 2.5240 9 7 3.9987 -2.5611 1.9158 10 6 5.1270 -2.9976 1.0897 11 6 2.9516 -3.3856 2.1163 12 8 2.0173 -3.0241 2.7998 13 6 2.9412 -4.7563 1.4902 14 16 1.4133 -5.6147 1.9426 15 6 1.6606 -7.1432 1.1017 16 1 2.5610 -7.3042 0.5276 17 6 0.6977 -8.1401 1.1764 18 7 -0.4001 -7.9437 1.8757 19 14 0.9594 -9.7603 0.2843 20 1 2.2635 -9.7295 -0.4255 21 1 0.9569 -10.8730 1.2678 22 1 -0.1340 -9.9664 -0.6990 23 6 2.0323 -0.7105 -1.2304 24 6 2.1649 -0.0201 -2.4223 25 7 2.6106 -0.6417 -3.4998 26 6 2.9201 -1.9251 -3.4415 27 6 2.7875 -2.6153 -2.2499 28 7 2.3465 -1.9925 -1.1710 29 1 -0.3634 0.5879 -0.8429 30 1 -0.3633 -1.0239 -0.0878 31 1 -0.3634 0.4359 0.9306 32 1 2.0074 -1.6931 1.0697 33 1 2.5751 1.0723 3.0933 34 1 4.2454 1.4435 2.6032 35 1 2.8880 1.8754 1.5360 36 1 5.0369 -0.9285 2.7256 37 1 3.4470 -1.2510 3.4579 38 1 5.8688 -3.4897 1.7186 39 1 4.7732 -3.6957 0.3309 40 1 5.5786 -2.1321 0.6047 41 1 2.9974 -4.6609 0.4058 42 1 3.7979 -5.3265 1.8497 43 1 -1.0733 -8.6403 1.9276 44 1 1.9080 1.0278 -2.4710 45 1 3.2808 -2.4341 -4.3232 46 1 3.0447 -3.6631 -2.2014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277760049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:47 Heat of formation + Delta-G solvation = 22.925068 kcal Electronic energy + Delta-G solvation = -28248.227501 eV Core-core repulsion = 24492.783354 eV Total energy + Delta-G solvation = -3755.444147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31007 -39.71980 -37.32964 -35.34803 -34.19194 -33.18092 -32.40514 -30.64743 -29.41767 -28.43766 -27.21213 -25.61722 -25.14580 -25.01027 -24.43929 -21.52671 -20.46425 -19.13270 -17.71491 -17.62264 -17.29714 -16.72518 -16.54778 -15.92387 -15.55099 -15.18191 -15.00062 -14.79007 -14.43825 -14.08469 -13.69696 -13.65236 -13.17337 -13.04462 -12.91170 -12.58790 -12.57786 -12.47672 -12.23956 -11.98214 -11.81782 -11.76278 -11.63171 -11.35581 -11.32748 -11.14570 -11.06362 -11.00230 -10.95369 -10.73902 -9.76601 -9.37079 -9.28149 -9.24457 -9.05172 -8.46248 -8.29012 -8.16015 -6.44364 -6.19351 -3.88297 0.62363 1.01919 3.00352 3.15647 3.21587 3.27151 3.31246 3.55237 3.66276 3.82611 4.04339 4.21630 4.22521 4.46598 4.59414 4.85767 4.92769 4.99880 5.05229 5.12795 5.15727 5.17590 5.23474 5.30407 5.31183 5.35586 5.40073 5.45276 5.58039 5.64185 5.69731 5.77710 5.85106 5.93051 5.96282 5.99019 6.17327 6.19166 6.21713 6.31831 6.69099 7.06843 7.19730 7.58245 7.61513 7.63179 7.74986 8.37238 8.66104 9.26012 10.87993 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.003960 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.952080 B = 7069.373173 C = 8146.607426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.136 3.864 3 H 0.092 0.908 4 N -0.662 5.662 5 C 0.069 3.931 6 H 0.031 0.969 7 C -0.140 4.140 8 C 0.117 3.883 9 N -0.626 5.626 10 C 0.086 3.914 11 C 0.533 3.467 12 O -0.500 6.500 13 C -0.147 4.147 14 S -0.057 6.057 15 C -0.533 4.533 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.915 3.085 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.055 3.945 24 C 0.049 3.951 25 N -0.438 5.438 26 C 0.038 3.962 27 C 0.062 3.938 28 N -0.424 5.424 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.372 0.628 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.267 0.733 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.949 17.844 -6.882 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.023 3.977 3 H 0.110 0.890 4 N -0.300 5.300 5 C -0.042 4.042 6 H 0.049 0.951 7 C -0.199 4.199 8 C -0.007 4.007 9 N -0.362 5.362 10 C -0.058 4.058 11 C 0.321 3.679 12 O -0.373 6.373 13 C -0.298 4.298 14 S 0.170 5.830 15 C -0.682 4.682 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.742 3.258 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.088 4.088 24 C -0.112 4.112 25 N -0.152 5.152 26 C -0.121 4.121 27 C -0.098 4.098 28 N -0.139 5.139 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.199 0.801 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.182 0.818 45 H 0.185 0.815 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.088 18.663 -5.342 21.435 hybrid contribution 1.945 -2.050 -2.378 3.694 sum 11.033 16.613 -7.721 21.385 Atomic orbital electron populations 1.21751 0.92430 1.02975 1.02249 1.20657 0.96575 0.96609 0.83829 0.88968 1.60777 1.22863 1.13728 1.32674 1.21859 0.90061 0.95317 0.96982 0.95130 1.21794 1.01552 0.95230 1.01278 1.21567 1.00542 0.81214 0.97338 1.47858 1.20558 1.15457 1.52368 1.21678 0.88992 1.00185 0.94973 1.20272 0.81309 0.85967 0.80313 1.90747 1.33758 1.75359 1.37393 1.23528 1.07328 0.95677 1.03262 1.85406 1.17413 1.12946 1.67269 1.22894 1.08152 1.00828 1.36283 0.91082 1.24965 0.94500 0.98633 0.95414 1.70029 1.07880 1.33902 1.38422 0.86169 0.78251 0.82147 0.79231 1.19671 1.20587 1.20640 1.23429 0.95570 0.91743 0.98048 1.23527 0.97072 1.01513 0.89083 1.68419 1.07445 1.09675 1.29674 1.23738 0.97924 0.91197 0.99249 1.23847 0.95002 1.01714 0.89208 1.68148 1.06985 1.08320 1.30440 0.92546 0.91973 0.90569 0.80078 0.91230 0.92651 0.92862 0.90590 0.88874 0.92826 0.90915 0.92203 0.89421 0.89810 0.92306 0.81818 0.81481 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.50 37.16 0.35 -1.26 16 2 C 0.14 1.61 2.69 -68.86 -0.19 1.42 16 3 H 0.09 0.88 6.58 -51.93 -0.34 0.54 16 4 N -0.66 -9.48 5.70 -100.95 -0.58 -10.05 16 5 C 0.07 0.81 2.82 -67.72 -0.19 0.62 16 6 H 0.03 0.36 7.74 -51.93 -0.40 -0.04 16 7 C -0.14 -1.31 9.26 37.16 0.34 -0.97 16 8 C 0.12 1.45 5.20 -4.04 -0.02 1.43 16 9 N -0.63 -8.87 2.62 -181.57 -0.48 -9.35 16 10 C 0.09 0.94 10.24 59.85 0.61 1.55 16 11 C 0.53 10.04 6.01 -10.98 -0.07 9.98 16 12 O -0.50 -11.21 14.17 5.56 0.08 -11.13 16 13 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 14 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 15 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 16 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 19 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 C 0.05 0.68 5.55 -82.41 -0.46 0.22 16 24 C 0.05 0.53 10.90 -17.37 -0.19 0.34 16 25 N -0.44 -5.11 10.50 -13.06 -0.14 -5.25 16 26 C 0.04 0.40 11.22 -17.38 -0.20 0.21 16 27 C 0.06 0.73 11.22 -17.38 -0.20 0.54 16 28 N -0.42 -5.92 9.04 -9.29 -0.08 -6.00 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.37 6.35 3.69 -39.29 -0.15 6.20 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.45 6.99 -51.93 -0.36 0.08 16 36 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 40 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 41 H 0.09 1.67 7.40 -51.92 -0.38 1.28 16 42 H 0.08 1.61 8.11 -51.91 -0.42 1.19 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -35.21 390.68 -8.59 -43.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.96 Total: 6.45 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.18 Total: -1.51 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.54 Total: -56.03 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.21 -8.59 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277760049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.731 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds