Wall clock time and date at job start Tue Mar 31 2020 21:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47297 * 2 1 4 4 N 1.46906 * 109.46927 * 119.99859 * 2 1 3 5 5 C 1.46900 * 111.00156 * 205.35777 * 4 2 1 6 6 H 1.09004 * 109.46880 * 317.01742 * 5 4 2 7 7 C 1.52996 * 109.46922 * 77.00985 * 5 4 2 8 8 C 1.52996 * 109.47494 * 197.01500 * 5 4 2 9 9 N 1.46499 * 109.47157 * 54.99469 * 8 5 4 10 10 C 1.46498 * 119.99780 * 90.00480 * 9 8 5 11 11 C 1.34776 * 120.00191 * 270.00436 * 9 8 5 12 12 O 1.21275 * 120.00299 * 0.02562 * 11 9 8 13 13 C 1.50702 * 119.99771 * 179.97438 * 11 9 8 14 14 S 1.80993 * 109.46998 * 179.97438 * 13 11 9 15 15 C 1.76201 * 99.99970 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99967 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00201 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46864 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47213 * 119.99659 * 19 17 15 22 22 H 1.48490 * 109.47504 * 239.99988 * 19 17 15 23 23 C 1.50699 * 109.47345 * 239.99546 * 2 1 3 24 24 C 1.38386 * 119.99736 * 85.02158 * 23 2 1 25 25 N 1.32130 * 119.99761 * 179.72352 * 24 23 2 26 26 C 1.32150 * 119.99595 * 0.51239 * 25 24 23 27 27 C 1.38342 * 120.00293 * 359.48921 * 26 25 24 28 28 N 1.32125 * 120.00373 * 265.00524 * 23 2 1 29 29 H 1.09003 * 109.47266 * 55.10242 * 1 2 3 30 30 H 1.09000 * 109.47086 * 175.09915 * 1 2 3 31 31 H 1.08999 * 109.47471 * 295.09901 * 1 2 3 32 32 H 1.00901 * 111.00193 * 81.40557 * 4 2 1 33 33 H 1.08998 * 109.47071 * 54.74528 * 7 5 4 34 34 H 1.09000 * 109.47168 * 174.74065 * 7 5 4 35 35 H 1.08995 * 109.47668 * 294.74206 * 7 5 4 36 36 H 1.08996 * 109.47478 * 175.00467 * 8 5 4 37 37 H 1.09001 * 109.46600 * 295.00318 * 8 5 4 38 38 H 1.08996 * 109.47248 * 89.99595 * 10 9 8 39 39 H 1.09005 * 109.47492 * 210.00273 * 10 9 8 40 40 H 1.09007 * 109.47321 * 330.00024 * 10 9 8 41 41 H 1.09002 * 109.47241 * 300.00270 * 13 11 9 42 42 H 1.09005 * 109.47225 * 60.00116 * 13 11 9 43 43 H 0.97007 * 120.00498 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.00565 * 359.97438 * 24 23 2 45 45 H 1.08007 * 119.99668 * 179.76962 * 26 25 24 46 46 H 1.08004 * 119.99498 * 180.27909 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3635 -0.2255 1.5653 6 1 3.9744 -0.1370 0.6669 7 6 3.2606 1.1396 2.2485 8 6 4.0086 -1.2283 2.5240 9 7 3.9987 -2.5611 1.9158 10 6 5.1270 -2.9976 1.0897 11 6 2.9516 -3.3856 2.1163 12 8 2.0173 -3.0241 2.7998 13 6 2.9412 -4.7563 1.4902 14 16 1.4133 -5.6147 1.9426 15 6 1.6606 -7.1432 1.1017 16 1 2.5610 -7.3042 0.5276 17 6 0.6977 -8.1401 1.1764 18 7 -0.4001 -7.9437 1.8757 19 14 0.9594 -9.7603 0.2843 20 1 2.2635 -9.7295 -0.4255 21 1 0.9569 -10.8730 1.2678 22 1 -0.1340 -9.9664 -0.6990 23 6 2.0323 -0.7105 -1.2304 24 6 2.1649 -0.0201 -2.4223 25 7 2.6106 -0.6417 -3.4998 26 6 2.9201 -1.9251 -3.4415 27 6 2.7875 -2.6153 -2.2499 28 7 2.3465 -1.9925 -1.1710 29 1 -0.3634 0.5879 -0.8429 30 1 -0.3633 -1.0239 -0.0878 31 1 -0.3634 0.4359 0.9306 32 1 2.0074 -1.6931 1.0697 33 1 2.5751 1.0723 3.0933 34 1 4.2454 1.4435 2.6032 35 1 2.8880 1.8754 1.5360 36 1 5.0369 -0.9285 2.7256 37 1 3.4470 -1.2510 3.4579 38 1 5.8688 -3.4897 1.7186 39 1 4.7732 -3.6957 0.3309 40 1 5.5786 -2.1321 0.6047 41 1 2.9974 -4.6609 0.4058 42 1 3.7979 -5.3265 1.8497 43 1 -1.0733 -8.6403 1.9276 44 1 1.9080 1.0278 -2.4710 45 1 3.2808 -2.4341 -4.3232 46 1 3.0447 -3.6631 -2.2014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277760049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:47 Heat of formation + Delta-G solvation = -2.071077 kcal Electronic energy + Delta-G solvation = -28249.311415 eV Core-core repulsion = 24492.783354 eV Total energy + Delta-G solvation = -3756.528061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17704 -41.00025 -38.38620 -36.53028 -35.11098 -34.56410 -34.12911 -31.60023 -30.82173 -29.36433 -28.23546 -27.66952 -26.34810 -25.91696 -25.29250 -22.47812 -21.42247 -20.52987 -19.50792 -18.57252 -18.23388 -17.93420 -17.58868 -17.13257 -16.86595 -16.65914 -16.22567 -15.99864 -15.78203 -15.39939 -14.80274 -14.64564 -14.50513 -14.41635 -14.08628 -13.83040 -13.45195 -13.41336 -13.37329 -13.13089 -13.01562 -12.94937 -12.90771 -12.64143 -12.55743 -12.52600 -12.30880 -12.26345 -12.06392 -11.87114 -11.67212 -11.14297 -10.76746 -10.20689 -10.20057 -10.14879 -9.62330 -9.26075 -8.61432 -8.32586 -6.08828 -0.20816 0.15116 1.28530 1.40685 1.47886 1.58104 1.70054 2.17907 2.29922 2.70180 2.96213 3.01509 3.23691 3.31925 3.39200 3.61677 3.77144 3.81185 3.97393 4.11200 4.17455 4.23926 4.30546 4.32147 4.38854 4.43578 4.45713 4.48192 4.53012 4.56350 4.65211 4.77203 4.84793 4.90213 4.92780 5.05240 5.08870 5.28119 5.40160 5.42785 5.43245 5.62679 6.18360 6.21578 6.31353 6.36093 6.54764 6.83542 7.08793 7.26405 8.76734 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.003960 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.952080 B = 7069.373173 C = 8146.607426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.136 3.864 3 H 0.120 0.880 4 N -0.686 5.686 5 C 0.073 3.927 6 H 0.037 0.963 7 C -0.134 4.134 8 C 0.113 3.887 9 N -0.611 5.611 10 C 0.079 3.921 11 C 0.535 3.465 12 O -0.546 6.546 13 C -0.119 4.119 14 S -0.144 6.144 15 C -0.542 4.542 16 H 0.080 0.920 17 C 0.015 3.985 18 N -0.912 5.912 19 Si 0.995 3.005 20 H -0.255 1.255 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.042 3.958 24 C 0.054 3.946 25 N -0.453 5.453 26 C 0.046 3.954 27 C 0.047 3.953 28 N -0.456 5.456 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.355 0.645 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.270 0.730 44 H 0.194 0.806 45 H 0.197 0.803 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.618 18.862 -8.858 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 H 0.138 0.862 4 N -0.322 5.322 5 C -0.038 4.038 6 H 0.055 0.945 7 C -0.192 4.192 8 C -0.009 4.009 9 N -0.346 5.346 10 C -0.063 4.063 11 C 0.323 3.677 12 O -0.423 6.423 13 C -0.270 4.270 14 S 0.083 5.917 15 C -0.690 4.690 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.549 5.549 19 Si 0.817 3.183 20 H -0.179 1.179 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.100 4.100 24 C -0.106 4.106 25 N -0.168 5.168 26 C -0.113 4.113 27 C -0.113 4.113 28 N -0.172 5.172 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.180 0.820 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.210 0.790 45 H 0.214 0.786 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 11.814 19.727 -7.335 24.135 hybrid contribution 1.188 -2.260 -1.776 3.110 sum 13.002 17.467 -9.111 23.604 Atomic orbital electron populations 1.21725 0.93137 1.00846 1.03233 1.20746 0.96037 0.97653 0.83157 0.86238 1.60821 1.24530 1.12816 1.34080 1.21910 0.88957 0.95977 0.96976 0.94521 1.21757 1.02593 0.94069 1.00770 1.21796 1.02443 0.80298 0.96403 1.47783 1.19772 1.15415 1.51636 1.21931 0.88059 1.01473 0.94876 1.19951 0.82000 0.85783 0.79939 1.90730 1.35802 1.76080 1.39659 1.23315 1.03408 0.96234 1.04073 1.85588 1.23064 1.14660 1.68365 1.23210 1.08593 1.00965 1.36223 0.90151 1.26077 0.93944 1.02858 0.96116 1.70197 1.09074 1.35406 1.40188 0.84960 0.78881 0.76568 0.77884 1.17881 1.20018 1.20060 1.23484 0.96333 0.91502 0.98710 1.23925 0.95820 1.02637 0.88202 1.68515 1.08125 1.10208 1.29912 1.24163 0.96561 0.90920 0.99651 1.24069 0.95536 1.02248 0.89441 1.68078 1.07874 1.09422 1.31828 0.89922 0.95853 0.90861 0.82026 0.92861 0.90343 0.91609 0.86825 0.91395 0.90982 0.91383 0.89601 0.88135 0.88495 0.92124 0.78953 0.78584 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.50 71.98 0.68 -2.47 16 2 C 0.14 3.11 2.69 44.17 0.12 3.23 16 3 H 0.12 1.99 6.58 -2.39 -0.02 1.97 16 4 N -0.69 -19.59 5.70 -473.31 -2.70 -22.29 16 5 C 0.07 1.58 2.82 44.91 0.13 1.70 16 6 H 0.04 0.76 7.74 -2.38 -0.02 0.74 16 7 C -0.13 -2.20 9.26 71.98 0.67 -1.53 16 8 C 0.11 2.63 5.20 86.38 0.45 3.08 16 9 N -0.61 -16.65 2.62 -846.77 -2.22 -18.86 16 10 C 0.08 1.53 10.24 127.77 1.31 2.83 16 11 C 0.54 20.49 6.01 87.66 0.53 21.02 16 12 O -0.55 -25.67 14.17 -3.01 -0.04 -25.71 16 13 C -0.12 -4.90 4.71 71.24 0.34 -4.57 16 14 S -0.14 -8.10 20.57 -56.49 -1.16 -9.27 16 15 C -0.54 -31.07 9.50 67.95 0.65 -30.42 16 16 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 17 C 0.01 0.84 5.49 84.86 0.47 1.30 16 18 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 19 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.04 0.99 5.55 42.55 0.24 1.23 16 24 C 0.05 1.07 10.90 84.68 0.92 1.99 16 25 N -0.45 -9.59 10.50 -195.22 -2.05 -11.64 16 26 C 0.05 0.88 11.22 84.67 0.95 1.83 16 27 C 0.05 1.06 11.22 84.67 0.95 2.01 16 28 N -0.46 -12.59 9.04 -183.30 -1.66 -14.25 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.36 12.41 3.69 -89.69 -0.33 12.07 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.92 6.99 -2.39 -0.02 0.90 16 36 H 0.11 1.77 8.07 -2.39 -0.02 1.75 16 37 H 0.07 1.96 7.42 -2.39 -0.02 1.95 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.40 6.44 -2.38 -0.02 1.39 16 40 H 0.09 1.26 8.07 -2.38 -0.02 1.24 16 41 H 0.10 3.85 7.40 -2.39 -0.02 3.83 16 42 H 0.10 3.69 8.11 -2.39 -0.02 3.67 16 43 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 44 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -80.81 390.68 1.52 -79.29 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.65 Total: 31.99 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 8.39 Total: 1.23 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -8.34 Total: -123.28 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.27 kcal Total: -80.81 1.52 -79.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277760049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.217 kcal (2) G-P(sol) polarization free energy of solvation -80.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds