Wall clock time and date at job start Tue Mar 31 2020 20:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47060 * 2 1 4 4 C 1.50704 * 109.46601 * 120.00052 * 2 1 3 5 5 N 1.31233 * 124.05570 * 300.01922 * 4 2 1 6 6 N 1.27340 * 120.04002 * 179.97438 * 5 4 2 7 7 S 1.56641 * 109.73798 * 359.69744 * 6 5 4 8 8 C 1.38243 * 124.05234 * 120.00696 * 4 2 1 9 9 C 1.47170 * 128.47881 * 0.02562 * 8 4 2 10 10 O 1.21623 * 119.99916 * 0.02562 * 9 8 4 11 11 N 1.34781 * 120.00099 * 180.02562 * 9 8 4 12 12 C 1.47027 * 125.64632 * 0.04326 * 11 9 8 13 13 C 1.54317 * 107.26947 * 178.90389 * 12 11 9 14 14 C 1.55156 * 102.94595 * 337.80661 * 13 12 11 15 15 H 1.08994 * 111.03789 * 277.41828 * 14 13 12 16 16 C 1.53003 * 111.00781 * 153.57425 * 14 13 12 17 17 H 1.09002 * 109.47024 * 306.35367 * 16 14 13 18 18 C 1.52995 * 109.46967 * 66.35443 * 16 14 13 19 19 N 1.46506 * 109.46997 * 186.35383 * 16 14 13 20 20 C 1.36929 * 119.99807 * 155.00007 * 19 16 14 21 21 H 1.08004 * 120.00341 * 0.27647 * 20 19 16 22 22 C 1.38815 * 120.00031 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47093 * 60.00562 * 24 22 20 26 26 H 1.48495 * 109.47002 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47239 * 300.00281 * 24 22 20 28 28 C 1.47423 * 125.64888 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47399 * 299.99654 * 1 2 3 30 30 H 1.09001 * 109.46923 * 60.00159 * 1 2 3 31 31 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47320 * 239.99825 * 2 1 3 33 33 H 1.09005 * 109.47026 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47122 * 299.99719 * 3 2 1 35 35 H 1.09001 * 109.47196 * 59.99750 * 3 2 1 36 36 H 1.09000 * 109.88217 * 298.32463 * 12 11 9 37 37 H 1.09002 * 109.88228 * 59.48650 * 12 11 9 38 38 H 1.09000 * 110.72529 * 219.44673 * 13 12 11 39 39 H 1.09003 * 110.72001 * 96.16873 * 13 12 11 40 40 H 1.08999 * 109.47559 * 59.99641 * 18 16 14 41 41 H 1.08999 * 109.46886 * 180.02562 * 18 16 14 42 42 H 1.09002 * 109.46959 * 299.99814 * 18 16 14 43 43 H 0.96999 * 120.00076 * 335.00070 * 19 16 14 44 44 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 45 45 H 1.09002 * 110.36294 * 85.32368 * 28 11 9 46 46 H 1.08995 * 110.36651 * 323.00415 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.7643 -0.3323 2.4583 6 7 2.2292 -0.9908 3.4440 7 16 3.0751 -2.2007 2.9201 8 6 2.8303 -1.8389 1.2013 9 6 3.3454 -2.5662 0.0302 10 8 3.0749 -2.1818 -1.0916 11 7 4.1168 -3.6581 0.2007 12 6 4.5185 -4.2300 1.4942 13 6 5.3697 -5.4824 1.1970 14 6 4.9291 -5.8692 -0.2395 15 1 4.0070 -6.4501 -0.2229 16 6 6.0395 -6.6290 -0.9679 17 1 6.9607 -6.0473 -0.9336 18 6 6.2641 -7.9805 -0.2870 19 7 5.6496 -6.8441 -2.3637 20 6 6.6102 -7.0201 -3.3235 21 1 7.6551 -7.0047 -3.0510 22 6 6.2407 -7.2245 -4.6459 23 7 4.9671 -7.2487 -4.9772 24 14 7.5511 -7.4652 -5.9552 25 1 8.3696 -8.6589 -5.6229 26 1 6.9011 -7.6622 -7.2757 27 1 8.4245 -6.2653 -6.0081 28 6 4.6965 -4.4777 -0.8790 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 5.1093 -3.5042 2.0530 37 1 3.6340 -4.5101 2.0664 38 1 5.1375 -6.2823 1.9000 39 1 6.4324 -5.2413 1.2226 40 1 5.3430 -8.5622 -0.3213 41 1 7.0555 -8.5216 -0.8057 42 1 6.5542 -7.8204 0.7514 43 1 4.7110 -6.8620 -2.6078 44 1 4.7089 -7.3911 -5.9013 45 1 5.6422 -4.0510 -1.2131 46 1 3.9987 -4.5552 -1.7127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279032053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:24 Heat of formation + Delta-G solvation = 40.372401 kcal Electronic energy + Delta-G solvation = -27335.256319 eV Core-core repulsion = 23580.568746 eV Total energy + Delta-G solvation = -3754.687574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28457 -40.08188 -37.92466 -35.74752 -35.31567 -32.68352 -31.52088 -30.60049 -28.90573 -28.37355 -27.43917 -27.32127 -24.40560 -23.88284 -22.84899 -21.79763 -21.47829 -19.76636 -19.44750 -18.27600 -17.48718 -16.98941 -16.40643 -16.07098 -15.69276 -15.25909 -14.86795 -14.49806 -14.33548 -13.96235 -13.78362 -13.47638 -13.32634 -13.10180 -12.94046 -12.78749 -12.53178 -12.34053 -12.28352 -12.16459 -11.86708 -11.45615 -11.45271 -11.38814 -11.14561 -10.95130 -10.86201 -10.69196 -10.64738 -10.39522 -10.29703 -10.04878 -10.01835 -9.96486 -9.87258 -9.65582 -8.94313 -8.76151 -7.00430 -5.78491 -3.08085 -0.48932 0.56211 1.25285 1.72932 2.69478 2.82760 3.42722 3.47471 3.48601 3.63913 4.14138 4.28283 4.46572 4.53869 4.74757 4.78426 4.84848 4.94425 4.95017 5.13030 5.25803 5.48058 5.49254 5.49792 5.54463 5.66618 5.69497 5.76612 5.79330 5.81988 5.87662 5.90952 6.04737 6.07983 6.10525 6.21322 6.23721 6.30729 6.45573 6.55415 6.78282 7.00800 7.27101 7.45164 7.67120 7.88259 8.39239 9.50812 10.06502 10.40823 11.43762 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002873 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.837258 B = 9744.637144 C =11145.269018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.269 5.269 7 S 0.414 5.586 8 C -0.281 4.281 9 C 0.611 3.389 10 O -0.510 6.510 11 N -0.608 5.608 12 C 0.084 3.916 13 C -0.119 4.119 14 C -0.103 4.103 15 H 0.083 0.917 16 C 0.185 3.815 17 H 0.050 0.950 18 C -0.164 4.164 19 N -0.724 5.724 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.122 3.878 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.079 0.921 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 10.599 17.919 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.041 4.041 5 N -0.110 5.110 6 N -0.249 5.249 7 S 0.552 5.448 8 C -0.422 4.422 9 C 0.396 3.604 10 O -0.386 6.386 11 N -0.341 5.341 12 C -0.040 4.040 13 C -0.158 4.158 14 C -0.123 4.123 15 H 0.102 0.898 16 C 0.075 3.925 17 H 0.068 0.932 18 C -0.225 4.225 19 N -0.366 5.366 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.001 3.999 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.549 10.857 19.196 22.518 hybrid contribution 0.264 -0.087 -2.032 2.051 sum -4.285 10.771 17.164 20.712 Atomic orbital electron populations 1.21800 0.93129 1.02284 1.02665 1.20186 0.96687 0.96177 0.92138 1.21799 1.01171 0.94219 1.02666 1.22944 0.94340 0.92538 0.94322 1.70598 1.19809 1.24489 0.96078 1.78783 1.13788 1.07686 1.24630 1.82748 1.39891 1.27352 0.94806 1.27777 1.10460 1.04118 0.99814 1.16004 0.78535 0.79538 0.86274 1.90814 1.58317 1.66102 1.23389 1.48437 1.49330 1.26883 1.09464 1.22318 0.99174 0.96792 0.85740 1.22661 0.99952 0.95354 0.97803 1.22717 1.00901 0.95141 0.93528 0.89826 1.20153 0.93903 0.92939 0.85527 0.93187 1.22445 1.01564 1.00095 0.98354 1.42407 1.06698 1.86573 1.00899 1.19139 0.88681 1.41721 0.87686 0.91269 1.24727 0.95972 1.02699 0.97274 1.69639 1.14097 1.56401 1.17717 0.86307 0.80769 0.77924 0.81390 1.21345 1.21730 1.21260 1.22381 0.99304 0.88860 0.89309 0.91919 0.91310 0.92609 0.85870 0.92654 0.91319 0.91920 0.91043 0.91112 0.89517 0.89841 0.93468 0.92692 0.94369 0.78235 0.93418 0.90318 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.16 37.16 0.34 -1.05 16 2 C -0.03 -0.34 3.25 -91.77 -0.30 -0.64 16 3 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 4 C 0.11 1.32 5.53 -82.84 -0.46 0.86 16 5 N -0.24 -3.11 11.51 33.42 0.38 -2.73 16 6 N -0.27 -3.22 12.51 60.35 0.75 -2.46 16 7 S 0.41 3.92 19.63 -107.50 -2.11 1.81 16 8 C -0.28 -3.47 6.66 -35.95 -0.24 -3.70 16 9 C 0.61 8.87 7.84 -12.63 -0.10 8.77 16 10 O -0.51 -8.99 14.80 5.26 0.08 -8.91 16 11 N -0.61 -8.01 3.33 -171.89 -0.57 -8.59 16 12 C 0.08 0.79 5.25 -3.06 -0.02 0.78 16 13 C -0.12 -1.15 5.59 -24.90 -0.14 -1.29 16 14 C -0.10 -1.42 2.62 -88.48 -0.23 -1.65 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C 0.19 3.19 2.41 -67.93 -0.16 3.03 16 17 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 18 C -0.16 -2.58 9.34 37.16 0.35 -2.24 16 19 N -0.72 -16.70 4.82 -53.42 -0.26 -16.96 16 20 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 21 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 24 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.12 1.89 6.08 -2.54 -0.02 1.87 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.12 1.63 5.49 -51.93 -0.29 1.34 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 37 H 0.07 0.56 7.01 -51.93 -0.36 0.20 16 38 H 0.09 0.68 8.13 -51.93 -0.42 0.25 16 39 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.47 7.50 -51.93 -0.39 0.08 16 43 H 0.38 9.57 7.80 -40.82 -0.32 9.25 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 46 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -31.16 383.52 -8.29 -39.45 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.17 Total: 5.57 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.88 Total: -3.17 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 1.03 Total: -57.43 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.11 Total: 1.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.16 -8.29 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279032053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.827 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds