Wall clock time and date at job start Tue Mar 31 2020 20:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47060 * 2 1 4 4 C 1.50704 * 109.46601 * 120.00052 * 2 1 3 5 5 N 1.31233 * 124.05570 * 300.01922 * 4 2 1 6 6 N 1.27340 * 120.04002 * 179.97438 * 5 4 2 7 7 S 1.56641 * 109.73798 * 359.69744 * 6 5 4 8 8 C 1.38243 * 124.05234 * 120.00696 * 4 2 1 9 9 C 1.47170 * 128.47881 * 0.02562 * 8 4 2 10 10 O 1.21623 * 119.99916 * 0.02562 * 9 8 4 11 11 N 1.34781 * 120.00099 * 180.02562 * 9 8 4 12 12 C 1.47027 * 125.64632 * 0.04326 * 11 9 8 13 13 C 1.54317 * 107.26947 * 178.90389 * 12 11 9 14 14 C 1.55156 * 102.94595 * 337.80661 * 13 12 11 15 15 H 1.08994 * 111.03789 * 277.41828 * 14 13 12 16 16 C 1.53003 * 111.00781 * 153.57425 * 14 13 12 17 17 H 1.09002 * 109.47024 * 306.35367 * 16 14 13 18 18 C 1.52995 * 109.46967 * 66.35443 * 16 14 13 19 19 N 1.46506 * 109.46997 * 186.35383 * 16 14 13 20 20 C 1.36929 * 119.99807 * 155.00007 * 19 16 14 21 21 H 1.08004 * 120.00341 * 0.27647 * 20 19 16 22 22 C 1.38815 * 120.00031 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47093 * 60.00562 * 24 22 20 26 26 H 1.48495 * 109.47002 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47239 * 300.00281 * 24 22 20 28 28 C 1.47423 * 125.64888 * 179.97438 * 11 9 8 29 29 H 1.08998 * 109.47399 * 299.99654 * 1 2 3 30 30 H 1.09001 * 109.46923 * 60.00159 * 1 2 3 31 31 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47320 * 239.99825 * 2 1 3 33 33 H 1.09005 * 109.47026 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47122 * 299.99719 * 3 2 1 35 35 H 1.09001 * 109.47196 * 59.99750 * 3 2 1 36 36 H 1.09000 * 109.88217 * 298.32463 * 12 11 9 37 37 H 1.09002 * 109.88228 * 59.48650 * 12 11 9 38 38 H 1.09000 * 110.72529 * 219.44673 * 13 12 11 39 39 H 1.09003 * 110.72001 * 96.16873 * 13 12 11 40 40 H 1.08999 * 109.47559 * 59.99641 * 18 16 14 41 41 H 1.08999 * 109.46886 * 180.02562 * 18 16 14 42 42 H 1.09002 * 109.46959 * 299.99814 * 18 16 14 43 43 H 0.96999 * 120.00076 * 335.00070 * 19 16 14 44 44 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 45 45 H 1.09002 * 110.36294 * 85.32368 * 28 11 9 46 46 H 1.08995 * 110.36651 * 323.00415 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 7 1.7643 -0.3323 2.4583 6 7 2.2292 -0.9908 3.4440 7 16 3.0751 -2.2007 2.9201 8 6 2.8303 -1.8389 1.2013 9 6 3.3454 -2.5662 0.0302 10 8 3.0749 -2.1818 -1.0916 11 7 4.1168 -3.6581 0.2007 12 6 4.5185 -4.2300 1.4942 13 6 5.3697 -5.4824 1.1970 14 6 4.9291 -5.8692 -0.2395 15 1 4.0070 -6.4501 -0.2229 16 6 6.0395 -6.6290 -0.9679 17 1 6.9607 -6.0473 -0.9336 18 6 6.2641 -7.9805 -0.2870 19 7 5.6496 -6.8441 -2.3637 20 6 6.6102 -7.0201 -3.3235 21 1 7.6551 -7.0047 -3.0510 22 6 6.2407 -7.2245 -4.6459 23 7 4.9671 -7.2487 -4.9772 24 14 7.5511 -7.4652 -5.9552 25 1 8.3696 -8.6589 -5.6229 26 1 6.9011 -7.6622 -7.2757 27 1 8.4245 -6.2653 -6.0081 28 6 4.6965 -4.4777 -0.8790 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 5.1093 -3.5042 2.0530 37 1 3.6340 -4.5101 2.0664 38 1 5.1375 -6.2823 1.9000 39 1 6.4324 -5.2413 1.2226 40 1 5.3430 -8.5622 -0.3213 41 1 7.0555 -8.5216 -0.8057 42 1 6.5542 -7.8204 0.7514 43 1 4.7110 -6.8620 -2.6078 44 1 4.7089 -7.3911 -5.9013 45 1 5.6422 -4.0510 -1.2131 46 1 3.9987 -4.5552 -1.7127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279032053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:23 Heat of formation + Delta-G solvation = 20.160528 kcal Electronic energy + Delta-G solvation = -27336.132772 eV Core-core repulsion = 23580.568746 eV Total energy + Delta-G solvation = -3755.564026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21155 -41.16289 -39.11197 -36.87678 -36.55175 -34.35373 -32.67844 -31.82604 -30.09397 -29.81522 -28.42818 -28.10465 -25.94536 -25.25069 -23.77742 -22.92790 -22.53109 -21.07543 -20.47332 -19.26310 -19.05169 -18.24643 -17.49050 -17.12460 -16.83503 -16.41700 -16.17708 -15.73566 -15.42862 -15.29013 -15.14466 -14.66186 -14.29980 -14.16947 -14.12209 -13.98347 -13.58969 -13.45956 -13.39340 -13.09292 -13.08360 -12.90467 -12.70647 -12.36933 -12.27924 -12.24096 -12.23856 -12.03823 -12.02222 -11.77302 -11.51567 -11.41092 -11.33156 -10.95883 -10.95089 -10.87258 -10.82004 -9.84617 -8.95205 -7.89506 -5.16446 -1.41027 -0.31722 0.38480 0.77925 1.48552 1.50652 1.56371 1.63459 1.75520 2.59075 2.72998 3.18597 3.38775 3.44807 3.55702 3.68114 3.87043 3.93661 4.10580 4.12219 4.17835 4.20809 4.35685 4.52650 4.61328 4.64626 4.67028 4.75386 4.85013 4.86953 4.88508 4.90114 4.95484 5.03743 5.10722 5.14406 5.20927 5.25965 5.32286 5.35921 5.44975 5.57353 5.69715 6.22387 6.32821 6.54949 6.78760 7.39110 8.17663 8.37677 9.33801 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002873 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.837258 B = 9744.637144 C =11145.269018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 C -0.135 4.135 4 C 0.104 3.896 5 N -0.262 5.262 6 N -0.292 5.292 7 S 0.518 5.482 8 C -0.312 4.312 9 C 0.607 3.393 10 O -0.555 6.555 11 N -0.606 5.606 12 C 0.074 3.926 13 C -0.106 4.106 14 C -0.094 4.094 15 H 0.080 0.920 16 C 0.179 3.821 17 H 0.050 0.950 18 C -0.154 4.154 19 N -0.738 5.738 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.965 3.035 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.280 1.280 28 C 0.127 3.873 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.370 0.630 44 H 0.248 0.752 45 H 0.063 0.937 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 10.461 21.373 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 C -0.193 4.193 4 C -0.045 4.045 5 N -0.126 5.126 6 N -0.272 5.272 7 S 0.655 5.345 8 C -0.452 4.452 9 C 0.394 3.606 10 O -0.435 6.435 11 N -0.338 5.338 12 C -0.048 4.048 13 C -0.145 4.145 14 C -0.114 4.114 15 H 0.099 0.901 16 C 0.071 3.929 17 H 0.068 0.932 18 C -0.214 4.214 19 N -0.378 5.378 20 C -0.362 4.362 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.795 3.205 25 H -0.204 1.204 26 H -0.228 1.228 27 H -0.207 1.207 28 C 0.005 3.995 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.202 0.798 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.364 10.715 22.746 25.368 hybrid contribution -0.029 -0.075 -2.962 2.964 sum -3.394 10.640 19.784 22.718 Atomic orbital electron populations 1.21768 0.92060 1.01944 1.03573 1.20189 0.97617 0.96770 0.91127 1.21765 1.00621 0.93337 1.03563 1.23092 0.94137 0.92618 0.94642 1.70670 1.20812 1.25207 0.95931 1.78529 1.14622 1.08966 1.25128 1.82225 1.36764 1.24436 0.91032 1.27592 1.11669 1.04678 1.01255 1.16301 0.78227 0.79600 0.86434 1.90790 1.59922 1.67364 1.25387 1.48449 1.48725 1.26265 1.10392 1.22687 1.00614 0.97331 0.84192 1.22715 1.00715 0.96196 0.94826 1.22534 0.99688 0.93198 0.96015 0.90116 1.20433 0.95020 0.94405 0.83071 0.93215 1.22285 1.00560 0.98051 1.00481 1.42654 1.05500 1.86515 1.03134 1.19548 0.89598 1.38727 0.88360 0.90535 1.25468 0.97637 1.04329 0.99518 1.69802 1.15950 1.59068 1.17334 0.85337 0.78539 0.78127 0.78541 1.20381 1.22781 1.20660 1.22096 0.97453 0.90602 0.89339 0.91463 0.89886 0.93549 0.88127 0.93440 0.89892 0.91489 0.88396 0.88824 0.86120 0.88502 0.94039 0.94935 0.89803 0.79824 0.94369 0.91890 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.16 71.98 0.66 -2.01 16 2 C -0.03 -0.81 3.25 -11.54 -0.04 -0.85 16 3 C -0.14 -2.62 9.16 71.98 0.66 -1.96 16 4 C 0.10 2.54 5.53 42.65 0.24 2.77 16 5 N -0.26 -6.36 11.51 -48.18 -0.55 -6.91 16 6 N -0.29 -6.30 12.51 37.02 0.46 -5.84 16 7 S 0.52 8.08 19.63 -56.49 -1.11 6.98 16 8 C -0.31 -7.38 6.66 24.62 0.16 -7.22 16 9 C 0.61 17.84 7.84 86.59 0.68 18.52 16 10 O -0.55 -20.83 14.80 -4.11 -0.06 -20.89 16 11 N -0.61 -15.49 3.33 -815.99 -2.71 -18.21 16 12 C 0.07 1.12 5.25 86.73 0.46 1.57 16 13 C -0.11 -1.58 5.59 31.78 0.18 -1.40 16 14 C -0.09 -2.46 2.62 -9.41 -0.02 -2.49 16 15 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 16 C 0.18 5.96 2.41 44.99 0.11 6.07 16 17 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 18 C -0.15 -4.45 9.34 71.98 0.67 -3.78 16 19 N -0.74 -34.65 4.82 -322.93 -1.56 -36.21 16 20 C -0.23 -12.25 9.93 84.04 0.83 -11.42 16 21 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 24 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 C 0.13 4.03 6.08 86.85 0.53 4.56 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 2.85 5.49 -2.39 -0.01 2.83 16 33 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.02 7.18 -2.39 -0.02 1.00 16 37 H 0.09 1.02 7.01 -2.39 -0.02 1.01 16 38 H 0.12 1.09 8.13 -2.39 -0.02 1.07 16 39 H 0.10 1.26 8.01 -2.39 -0.02 1.24 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.67 7.50 -2.39 -0.02 1.65 16 43 H 0.37 19.22 7.80 -92.71 -0.72 18.50 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 46 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 Total: -1.00 -72.09 383.52 2.63 -69.46 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.27 Total: 24.29 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.58 Total: -1.56 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -4.08 Total: -126.22 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 8.08 SS G_CDS: -1.11 Total: 6.98 kcal Total: -72.09 2.63 -69.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279032053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.624 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds