Wall clock time and date at job start Tue Mar 31 2020 20:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 C 1.50699 * 109.47094 * 119.99980 * 2 1 3 5 5 N 1.31240 * 124.05515 * 300.02106 * 4 2 1 6 6 N 1.27337 * 120.03664 * 179.97438 * 5 4 2 7 7 S 1.56640 * 109.74076 * 359.69923 * 6 5 4 8 8 C 1.38250 * 124.05482 * 120.00351 * 4 2 1 9 9 C 1.47168 * 128.47707 * 0.02562 * 8 4 2 10 10 O 1.21625 * 120.00031 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00005 * 180.02562 * 9 8 4 12 12 C 1.47016 * 125.64963 * 0.05014 * 11 9 8 13 13 C 1.54375 * 107.29048 * 178.86929 * 12 11 9 14 14 C 1.55158 * 102.91753 * 337.85829 * 13 12 11 15 15 H 1.09002 * 111.00437 * 277.36144 * 14 13 12 16 16 C 1.53001 * 111.00472 * 153.54740 * 14 13 12 17 17 H 1.08999 * 109.46935 * 63.17849 * 16 14 13 18 18 C 1.52999 * 109.46944 * 303.18111 * 16 14 13 19 19 N 1.46499 * 109.47193 * 183.17908 * 16 14 13 20 20 C 1.36939 * 119.99933 * 205.27576 * 19 16 14 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 16 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 16 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47132 * 300.00314 * 24 22 20 28 28 C 1.47425 * 125.64856 * 180.02562 * 11 9 8 29 29 H 1.09003 * 109.46676 * 60.00188 * 1 2 3 30 30 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47181 * 300.00093 * 1 2 3 32 32 H 1.09002 * 109.47543 * 240.00286 * 2 1 3 33 33 H 1.09002 * 109.47245 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47556 * 299.99842 * 3 2 1 35 35 H 1.09000 * 109.47174 * 59.99902 * 3 2 1 36 36 H 1.08997 * 109.87912 * 298.31626 * 12 11 9 37 37 H 1.08995 * 109.88908 * 59.32598 * 12 11 9 38 38 H 1.09001 * 110.75395 * 219.49062 * 13 12 11 39 39 H 1.08993 * 110.70344 * 96.20153 * 13 12 11 40 40 H 1.09001 * 109.46823 * 179.97438 * 18 16 14 41 41 H 1.08999 * 109.47091 * 299.99643 * 18 16 14 42 42 H 1.08996 * 109.47098 * 60.00014 * 18 16 14 43 43 H 0.97001 * 119.99790 * 24.99549 * 19 16 14 44 44 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 45 45 H 1.08998 * 110.36780 * 85.32746 * 28 11 9 46 46 H 1.09005 * 110.45907 * 323.05420 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7644 -0.3322 2.4583 6 7 2.2295 -0.9907 3.4439 7 16 3.0754 -2.2005 2.9200 8 6 2.8303 -1.8389 1.2013 9 6 3.3453 -2.5662 0.0301 10 8 3.0748 -2.1819 -1.0917 11 7 4.1168 -3.6581 0.2006 12 6 4.5184 -4.2300 1.4940 13 6 5.3693 -5.4834 1.1972 14 6 4.9289 -5.8692 -0.2397 15 1 4.0068 -6.4502 -0.2230 16 6 6.0392 -6.6291 -0.9682 17 1 6.2376 -7.5674 -0.4502 18 6 7.3110 -5.7787 -0.9879 19 7 5.6181 -6.9097 -2.3430 20 6 6.1544 -7.9724 -3.0200 21 1 6.8911 -8.6010 -2.5418 22 6 5.7511 -8.2418 -4.3206 23 7 4.8536 -7.4755 -4.9033 24 14 6.4833 -9.6910 -5.2442 25 1 6.1871 -10.9470 -4.5094 26 1 5.8912 -9.7613 -6.6043 27 1 7.9540 -9.5165 -5.3535 28 6 4.6972 -4.4771 -0.8791 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 5.1093 -3.5042 2.0527 37 1 3.6340 -4.5076 2.0674 38 1 5.1365 -6.2835 1.8998 39 1 6.4320 -5.2427 1.2233 40 1 8.1021 -6.3202 -1.5064 41 1 7.1127 -4.8404 -1.5058 42 1 7.6243 -5.5699 0.0350 43 1 4.9564 -6.3452 -2.7723 44 1 4.5721 -7.6636 -5.8123 45 1 5.6431 -4.0503 -1.2124 46 1 4.0014 -4.5546 -1.7146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279032054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:27 Heat of formation + Delta-G solvation = 46.013944 kcal Electronic energy + Delta-G solvation = -27393.143454 eV Core-core repulsion = 23638.700516 eV Total energy + Delta-G solvation = -3754.442938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29959 -40.16684 -38.04302 -35.76068 -35.29323 -32.73810 -31.49067 -30.62618 -28.95256 -28.17057 -27.33500 -27.33416 -24.79279 -23.90031 -22.99905 -21.92079 -21.73292 -19.57686 -18.97100 -18.30648 -17.39369 -17.17113 -16.44975 -16.09230 -15.77844 -15.28098 -14.80254 -14.61588 -14.40896 -14.03942 -13.72932 -13.41433 -13.39014 -13.34240 -13.03746 -12.86160 -12.58047 -12.35958 -12.33270 -12.18620 -11.82034 -11.46772 -11.43763 -11.19523 -11.16000 -11.05188 -10.88159 -10.64798 -10.46302 -10.42868 -10.31855 -10.06130 -10.03734 -9.97751 -9.87318 -9.65983 -8.95721 -8.73946 -7.01636 -5.79189 -3.09122 -0.50299 0.54987 1.24085 1.71508 2.66503 2.80176 3.41774 3.46419 3.47780 3.62629 4.12111 4.26767 4.45427 4.52273 4.73288 4.77918 4.84163 4.93070 4.93689 5.14532 5.24359 5.47818 5.48096 5.48957 5.53858 5.65380 5.65707 5.67313 5.68630 5.80970 5.85976 5.94181 6.03254 6.03580 6.07320 6.13211 6.19759 6.32936 6.45435 6.60216 6.75367 7.03113 7.23979 7.43824 7.66332 7.85208 8.38652 9.49927 10.05891 10.40020 11.43013 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002697 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.807606 B =10378.601808 C =11468.879261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.269 5.269 7 S 0.416 5.584 8 C -0.282 4.282 9 C 0.611 3.389 10 O -0.511 6.511 11 N -0.605 5.605 12 C 0.085 3.915 13 C -0.126 4.126 14 C -0.103 4.103 15 H 0.087 0.913 16 C 0.185 3.815 17 H 0.054 0.946 18 C -0.173 4.173 19 N -0.725 5.725 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.110 3.890 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.084 0.916 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 12.671 17.282 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.041 4.041 5 N -0.110 5.110 6 N -0.249 5.249 7 S 0.553 5.447 8 C -0.423 4.423 9 C 0.397 3.603 10 O -0.387 6.387 11 N -0.339 5.339 12 C -0.039 4.039 13 C -0.164 4.164 14 C -0.123 4.123 15 H 0.105 0.895 16 C 0.074 3.926 17 H 0.072 0.928 18 C -0.233 4.233 19 N -0.366 5.366 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.011 4.011 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.530 12.780 18.606 22.847 hybrid contribution 0.057 -0.436 -1.914 1.964 sum -3.473 12.344 16.691 21.049 Atomic orbital electron populations 1.21800 0.93118 1.02298 1.02674 1.20184 0.96697 0.96167 0.92126 1.21798 1.01152 0.94221 1.02678 1.22948 0.94310 0.92527 0.94330 1.70602 1.19804 1.24493 0.96072 1.78781 1.13768 1.07678 1.24638 1.82756 1.39844 1.27316 0.94765 1.27761 1.10538 1.04132 0.99826 1.16007 0.78494 0.79525 0.86294 1.90809 1.58362 1.66175 1.23397 1.48393 1.49285 1.26817 1.09392 1.22313 0.99190 0.96804 0.85635 1.22813 1.00401 0.95457 0.97748 1.22752 1.01030 0.94991 0.93512 0.89472 1.20072 0.90283 0.95079 0.87117 0.92819 1.22636 1.00454 1.00961 0.99208 1.42428 1.50175 1.34419 1.09589 1.19163 1.18360 1.04452 0.95352 0.91205 1.24746 0.99448 0.99247 0.97331 1.69650 1.34147 1.40021 1.14038 0.86291 0.78480 0.82365 0.79146 1.21296 1.21720 1.21297 1.22606 0.99339 0.89418 0.89713 0.91305 0.92599 0.91912 0.85881 0.92666 0.91318 0.91914 0.91050 0.91112 0.89548 0.89248 0.92602 0.93092 0.94084 0.78168 0.93385 0.89783 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 2 C -0.03 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -1.34 9.16 37.16 0.34 -1.00 16 4 C 0.11 1.30 5.53 -82.84 -0.46 0.84 16 5 N -0.24 -3.08 11.51 33.42 0.38 -2.70 16 6 N -0.27 -3.19 12.51 60.35 0.75 -2.43 16 7 S 0.42 3.89 19.63 -107.50 -2.11 1.78 16 8 C -0.28 -3.42 6.66 -35.95 -0.24 -3.66 16 9 C 0.61 8.69 7.84 -12.64 -0.10 8.59 16 10 O -0.51 -8.78 14.80 5.26 0.08 -8.70 16 11 N -0.61 -7.82 3.33 -171.85 -0.57 -8.39 16 12 C 0.08 0.79 5.26 -3.04 -0.02 0.78 16 13 C -0.13 -1.22 6.31 -24.87 -0.16 -1.38 16 14 C -0.10 -1.43 3.08 -88.46 -0.27 -1.71 16 15 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.18 3.21 2.84 -67.93 -0.19 3.01 16 17 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 18 C -0.17 -2.72 8.85 37.16 0.33 -2.39 16 19 N -0.72 -16.87 5.07 -53.43 -0.27 -17.14 16 20 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 24 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 28 C 0.11 1.64 5.69 -2.52 -0.01 1.63 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.12 1.59 5.49 -51.93 -0.29 1.31 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.54 7.18 -51.93 -0.37 0.17 16 37 H 0.07 0.56 7.00 -51.93 -0.36 0.20 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.82 5.74 -51.93 -0.30 0.52 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.82 6.04 -51.93 -0.31 0.51 16 42 H 0.04 0.51 6.07 -51.93 -0.32 0.19 16 43 H 0.38 9.63 7.06 -40.82 -0.29 9.34 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.08 1.29 5.66 -51.93 -0.29 1.00 16 46 H 0.09 1.55 7.79 -51.93 -0.40 1.14 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -31.35 375.36 -8.07 -39.41 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.71 Total: 6.36 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.98 Total: -3.90 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 1.02 Total: -57.45 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.11 Total: 1.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.35 -8.07 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279032054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.425 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds