Wall clock time and date at job start Tue Mar 31 2020 20:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 C 1.50699 * 109.47094 * 119.99980 * 2 1 3 5 5 N 1.31240 * 124.05515 * 300.02106 * 4 2 1 6 6 N 1.27337 * 120.03664 * 179.97438 * 5 4 2 7 7 S 1.56640 * 109.74076 * 359.69923 * 6 5 4 8 8 C 1.38250 * 124.05482 * 120.00351 * 4 2 1 9 9 C 1.47168 * 128.47707 * 0.02562 * 8 4 2 10 10 O 1.21625 * 120.00031 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00005 * 180.02562 * 9 8 4 12 12 C 1.47016 * 125.64963 * 0.05014 * 11 9 8 13 13 C 1.54375 * 107.29048 * 178.86929 * 12 11 9 14 14 C 1.55158 * 102.91753 * 337.85829 * 13 12 11 15 15 H 1.09002 * 111.00437 * 277.36144 * 14 13 12 16 16 C 1.53001 * 111.00472 * 153.54740 * 14 13 12 17 17 H 1.08999 * 109.46935 * 63.17849 * 16 14 13 18 18 C 1.52999 * 109.46944 * 303.18111 * 16 14 13 19 19 N 1.46499 * 109.47193 * 183.17908 * 16 14 13 20 20 C 1.36939 * 119.99933 * 205.27576 * 19 16 14 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 16 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 16 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47173 * 60.00435 * 24 22 20 26 26 H 1.48497 * 109.47172 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47132 * 300.00314 * 24 22 20 28 28 C 1.47425 * 125.64856 * 180.02562 * 11 9 8 29 29 H 1.09003 * 109.46676 * 60.00188 * 1 2 3 30 30 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47181 * 300.00093 * 1 2 3 32 32 H 1.09002 * 109.47543 * 240.00286 * 2 1 3 33 33 H 1.09002 * 109.47245 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47556 * 299.99842 * 3 2 1 35 35 H 1.09000 * 109.47174 * 59.99902 * 3 2 1 36 36 H 1.08997 * 109.87912 * 298.31626 * 12 11 9 37 37 H 1.08995 * 109.88908 * 59.32598 * 12 11 9 38 38 H 1.09001 * 110.75395 * 219.49062 * 13 12 11 39 39 H 1.08993 * 110.70344 * 96.20153 * 13 12 11 40 40 H 1.09001 * 109.46823 * 179.97438 * 18 16 14 41 41 H 1.08999 * 109.47091 * 299.99643 * 18 16 14 42 42 H 1.08996 * 109.47098 * 60.00014 * 18 16 14 43 43 H 0.97001 * 119.99790 * 24.99549 * 19 16 14 44 44 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 45 45 H 1.08998 * 110.36780 * 85.32746 * 28 11 9 46 46 H 1.09005 * 110.45907 * 323.05420 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7644 -0.3322 2.4583 6 7 2.2295 -0.9907 3.4439 7 16 3.0754 -2.2005 2.9200 8 6 2.8303 -1.8389 1.2013 9 6 3.3453 -2.5662 0.0301 10 8 3.0748 -2.1819 -1.0917 11 7 4.1168 -3.6581 0.2006 12 6 4.5184 -4.2300 1.4940 13 6 5.3693 -5.4834 1.1972 14 6 4.9289 -5.8692 -0.2397 15 1 4.0068 -6.4502 -0.2230 16 6 6.0392 -6.6291 -0.9682 17 1 6.2376 -7.5674 -0.4502 18 6 7.3110 -5.7787 -0.9879 19 7 5.6181 -6.9097 -2.3430 20 6 6.1544 -7.9724 -3.0200 21 1 6.8911 -8.6010 -2.5418 22 6 5.7511 -8.2418 -4.3206 23 7 4.8536 -7.4755 -4.9033 24 14 6.4833 -9.6910 -5.2442 25 1 6.1871 -10.9470 -4.5094 26 1 5.8912 -9.7613 -6.6043 27 1 7.9540 -9.5165 -5.3535 28 6 4.6972 -4.4771 -0.8791 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 5.1093 -3.5042 2.0527 37 1 3.6340 -4.5076 2.0674 38 1 5.1365 -6.2835 1.8998 39 1 6.4320 -5.2427 1.2233 40 1 8.1021 -6.3202 -1.5064 41 1 7.1127 -4.8404 -1.5058 42 1 7.6243 -5.5699 0.0350 43 1 4.9564 -6.3452 -2.7723 44 1 4.5721 -7.6636 -5.8123 45 1 5.6431 -4.0503 -1.2124 46 1 4.0014 -4.5546 -1.7146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279032054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:27 Heat of formation + Delta-G solvation = 25.478007 kcal Electronic energy + Delta-G solvation = -27394.033959 eV Core-core repulsion = 23638.700516 eV Total energy + Delta-G solvation = -3755.333443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21178 -41.23024 -39.21968 -36.83757 -36.54456 -34.39862 -32.63483 -31.83733 -30.27597 -29.41930 -28.36177 -28.10054 -26.22131 -25.39083 -23.92544 -23.17535 -22.62005 -20.59094 -20.26986 -19.30509 -19.04216 -18.22230 -17.57862 -17.10952 -16.82488 -16.55043 -16.17186 -15.77241 -15.46167 -15.24234 -15.10063 -14.88556 -14.37458 -14.32650 -14.12449 -13.89584 -13.62665 -13.54567 -13.39865 -13.11831 -13.08127 -12.74995 -12.72865 -12.28321 -12.26968 -12.23762 -12.17005 -12.11924 -12.03050 -11.62999 -11.50868 -11.42744 -11.32505 -10.95919 -10.91962 -10.88385 -10.80239 -9.80734 -8.96935 -7.89800 -5.17764 -1.40840 -0.31421 0.38595 0.78147 1.49134 1.51342 1.57403 1.63105 1.75639 2.59069 2.73341 3.18024 3.38875 3.44000 3.54522 3.65268 3.91426 3.94935 4.10849 4.12645 4.16130 4.20079 4.32964 4.45931 4.52678 4.64675 4.67439 4.75101 4.75795 4.87513 4.88969 4.91150 4.94518 5.04427 5.09599 5.11310 5.23151 5.26406 5.33200 5.36276 5.42832 5.57851 5.72021 6.21813 6.32381 6.55153 6.78474 7.38324 8.16868 8.36827 9.33524 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002697 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.807606 B =10378.601808 C =11468.879261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 C -0.135 4.135 4 C 0.104 3.896 5 N -0.262 5.262 6 N -0.293 5.293 7 S 0.516 5.484 8 C -0.312 4.312 9 C 0.608 3.392 10 O -0.554 6.554 11 N -0.604 5.604 12 C 0.075 3.925 13 C -0.112 4.112 14 C -0.096 4.096 15 H 0.075 0.925 16 C 0.179 3.821 17 H 0.059 0.941 18 C -0.163 4.163 19 N -0.740 5.740 20 C -0.233 4.233 21 H 0.079 0.921 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.968 3.032 25 H -0.277 1.277 26 H -0.302 1.302 27 H -0.279 1.279 28 C 0.115 3.885 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.034 0.966 41 H 0.040 0.960 42 H 0.085 0.915 43 H 0.371 0.629 44 H 0.248 0.752 45 H 0.078 0.922 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 12.354 20.644 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 C -0.193 4.193 4 C -0.045 4.045 5 N -0.126 5.126 6 N -0.273 5.273 7 S 0.654 5.346 8 C -0.452 4.452 9 C 0.395 3.605 10 O -0.433 6.433 11 N -0.336 5.336 12 C -0.047 4.047 13 C -0.150 4.150 14 C -0.116 4.116 15 H 0.093 0.907 16 C 0.070 3.930 17 H 0.077 0.923 18 C -0.223 4.223 19 N -0.380 5.380 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.798 3.202 25 H -0.203 1.203 26 H -0.228 1.228 27 H -0.205 1.205 28 C -0.007 4.007 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.202 0.798 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.339 12.453 22.065 25.444 hybrid contribution -0.243 -0.371 -2.820 2.854 sum -2.581 12.081 19.246 22.870 Atomic orbital electron populations 1.21770 0.92132 1.01912 1.03567 1.20190 0.97556 0.96791 0.91126 1.21764 1.00656 0.93306 1.03546 1.23103 0.94127 0.92625 0.94640 1.70671 1.20795 1.25212 0.95954 1.78531 1.14638 1.08960 1.25149 1.82245 1.36800 1.24444 0.91127 1.27598 1.11687 1.04658 1.01238 1.16280 0.78201 0.79606 0.86433 1.90787 1.59874 1.67392 1.25292 1.48406 1.48726 1.26212 1.10291 1.22671 1.00546 0.97308 0.84223 1.22839 1.01146 0.96260 0.94706 1.22542 0.99467 0.93437 0.96159 0.90669 1.20347 0.92065 0.96137 0.84416 0.92330 1.22490 0.98547 0.99628 1.01599 1.42709 1.49850 1.33550 1.11920 1.19602 1.17079 1.04439 0.95343 0.90276 1.25523 1.00742 1.02169 0.98706 1.69824 1.36420 1.42175 1.13904 0.85282 0.77822 0.79769 0.77321 1.20305 1.22837 1.20526 1.22358 0.98052 0.90692 0.89575 0.89859 0.93599 0.91514 0.88030 0.93366 0.89876 0.91558 0.88220 0.89071 0.86519 0.87824 0.94717 0.94059 0.89638 0.79772 0.94331 0.90359 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.16 71.98 0.66 -1.98 16 2 C -0.03 -0.79 3.25 -11.54 -0.04 -0.82 16 3 C -0.13 -2.54 9.16 71.98 0.66 -1.88 16 4 C 0.10 2.50 5.53 42.65 0.24 2.73 16 5 N -0.26 -6.30 11.51 -48.18 -0.55 -6.86 16 6 N -0.29 -6.27 12.51 37.02 0.46 -5.81 16 7 S 0.52 7.99 19.63 -56.49 -1.11 6.88 16 8 C -0.31 -7.24 6.66 24.62 0.16 -7.08 16 9 C 0.61 17.37 7.84 86.59 0.68 18.05 16 10 O -0.55 -20.14 14.80 -4.11 -0.06 -20.20 16 11 N -0.60 -14.99 3.33 -815.85 -2.71 -17.71 16 12 C 0.08 1.12 5.26 86.75 0.46 1.58 16 13 C -0.11 -1.68 6.31 31.80 0.20 -1.48 16 14 C -0.10 -2.55 3.08 -9.39 -0.03 -2.58 16 15 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 16 C 0.18 5.99 2.84 44.99 0.13 6.12 16 17 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 18 C -0.16 -4.84 8.85 71.98 0.64 -4.20 16 19 N -0.74 -35.05 5.07 -322.94 -1.64 -36.68 16 20 C -0.23 -12.37 9.93 84.03 0.83 -11.53 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 22 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 23 N -0.97 -59.61 13.06 21.65 0.28 -59.32 16 24 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.12 3.49 5.69 86.86 0.49 3.98 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 2.80 5.49 -2.39 -0.01 2.78 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 0.99 7.18 -2.39 -0.02 0.97 16 37 H 0.09 1.03 7.00 -2.39 -0.02 1.01 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.31 5.74 -2.39 -0.01 1.30 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 1.30 6.04 -2.39 -0.01 1.29 16 42 H 0.09 1.77 6.07 -2.39 -0.01 1.75 16 43 H 0.37 19.42 7.06 -92.71 -0.65 18.76 16 44 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.08 2.45 5.66 -2.39 -0.01 2.43 16 46 H 0.05 1.83 7.79 -2.38 -0.02 1.81 16 Total: -1.00 -71.94 375.36 2.60 -69.33 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.36 Total: 25.87 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.55 Total: -3.13 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -4.16 Total: -126.38 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -1.11 Total: 6.88 kcal Total: -71.94 2.60 -69.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279032054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.811 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds