Wall clock time and date at job start Tue Mar 31 2020 20:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46799 * 2 1 4 4 N 1.46496 * 109.47106 * 119.99988 * 2 1 3 5 5 C 1.36941 * 120.00017 * 286.88281 * 4 2 1 6 6 H 1.08004 * 119.99717 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00096 * 180.27504 * 5 4 2 8 8 N 1.31622 * 120.00100 * 359.72678 * 7 5 4 9 9 Si 1.86804 * 120.00214 * 179.72659 * 7 5 4 10 10 H 1.48504 * 109.46661 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47430 * 120.00210 * 9 7 5 12 12 H 1.48502 * 109.47154 * 240.00423 * 9 7 5 13 13 C 1.52998 * 109.47009 * 240.00067 * 2 1 3 14 14 H 1.09000 * 109.58274 * 286.85263 * 13 2 1 15 15 C 1.53191 * 109.58958 * 47.13019 * 13 2 1 16 16 C 1.53068 * 109.29621 * 174.28105 * 15 13 2 17 17 C 1.53043 * 109.65759 * 298.84957 * 16 15 13 18 18 C 1.53184 * 109.31281 * 61.30155 * 17 16 15 19 19 N 1.46919 * 109.58770 * 166.56882 * 13 2 1 20 20 C 1.34780 * 120.62851 * 6.58066 * 19 13 2 21 21 O 1.21568 * 120.00210 * 3.21850 * 20 19 13 22 22 C 1.47732 * 119.99742 * 183.22485 * 20 19 13 23 23 C 1.39655 * 120.10711 * 307.83612 * 22 20 19 24 24 C 1.37855 * 119.92142 * 179.72703 * 23 22 20 25 25 C 1.38607 * 120.14694 * 0.57679 * 24 23 22 26 26 F 1.35095 * 119.88478 * 179.72296 * 25 24 23 27 27 C 1.38828 * 120.22231 * 359.70079 * 25 24 23 28 28 F 1.35099 * 119.96496 * 180.02562 * 27 25 24 29 29 C 1.38062 * 120.07579 * 359.97438 * 27 25 24 30 30 H 1.08994 * 109.47596 * 60.00092 * 1 2 3 31 31 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47213 * 300.00213 * 1 2 3 33 33 H 0.96992 * 120.00240 * 106.88561 * 4 2 1 34 34 H 0.97000 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.49703 * 294.37758 * 15 13 2 36 36 H 1.09003 * 109.49541 * 54.47031 * 15 13 2 37 37 H 1.08999 * 109.45348 * 178.76319 * 16 15 13 38 38 H 1.08999 * 109.33465 * 58.86708 * 16 15 13 39 39 H 1.09000 * 109.50043 * 301.34769 * 17 16 15 40 40 H 1.08997 * 109.49685 * 181.25159 * 17 16 15 41 41 H 1.09001 * 109.58856 * 185.57793 * 18 17 16 42 42 H 1.09002 * 109.70857 * 65.22308 * 18 17 16 43 43 H 1.08000 * 120.03744 * 0.02723 * 23 22 20 44 44 H 1.08000 * 119.91899 * 180.29865 * 24 23 22 45 45 H 1.07997 * 120.07965 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.9218 -0.0880 2.4220 6 1 1.4854 0.8963 2.5070 7 6 2.3897 -0.7399 3.5546 8 7 2.9212 -1.9396 3.4511 9 14 2.2651 0.0853 5.2259 10 1 1.6326 1.4201 5.0728 11 1 1.4386 -0.7527 6.1313 12 1 3.6245 0.2443 5.8021 13 6 2.0400 -0.7212 -1.2492 14 1 1.8810 -1.7942 -1.1421 15 6 1.2854 -0.2109 -2.4809 16 6 1.8963 -0.8297 -3.7406 17 6 3.3633 -0.4104 -3.8608 18 6 4.1388 -0.9256 -2.6444 19 7 3.4735 -0.4506 -1.4235 20 6 4.1650 0.2210 -0.4816 21 8 3.6172 0.5581 0.5500 22 6 5.5886 0.5478 -0.7028 23 6 6.4895 -0.4557 -1.0658 24 6 7.8160 -0.1455 -1.2768 25 6 8.2599 1.1579 -1.1179 26 9 9.5621 1.4549 -1.3205 27 6 7.3708 2.1591 -0.7516 28 9 7.8090 3.4279 -0.5986 29 6 6.0389 1.8600 -0.5444 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.4100 -1.5746 1.1198 34 1 3.2485 -2.3950 4.2425 35 1 0.2351 -0.4930 -2.4068 36 1 1.3682 0.8746 -2.5343 37 1 1.3473 -0.4855 -4.6171 38 1 1.8333 -1.9160 -3.6761 39 1 3.4288 0.6770 -3.9002 40 1 3.7894 -0.8341 -4.7701 41 1 5.1603 -0.5466 -2.6749 42 1 4.1531 -2.0155 -2.6523 43 1 6.1463 -1.4727 -1.1858 44 1 8.5117 -0.9208 -1.5622 45 1 5.3471 2.6390 -0.2599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316879187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:54 Heat of formation + Delta-G solvation = -42.452261 kcal Electronic energy + Delta-G solvation = -30871.933916 eV Core-core repulsion = 26527.521658 eV Total energy + Delta-G solvation = -4344.412258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.56452 -48.63601 -40.57095 -38.62949 -36.86188 -35.22607 -32.79576 -32.24720 -31.14703 -30.44117 -29.86377 -27.79805 -25.50981 -24.33340 -23.61692 -23.14567 -22.63259 -20.86360 -20.03835 -19.38312 -17.95389 -17.58837 -17.16525 -16.70384 -16.40992 -15.87448 -15.59186 -15.05143 -14.96237 -14.74389 -14.58425 -14.33598 -14.28687 -14.05217 -13.74658 -13.55442 -13.20967 -13.04848 -12.78123 -12.56303 -12.39029 -12.21283 -12.01570 -11.97586 -11.48825 -11.39071 -11.16350 -10.94350 -10.86480 -10.68715 -10.62303 -10.42478 -10.14081 -9.71985 -9.45758 -9.24592 -8.86266 -8.67719 -8.42298 -8.08586 -6.54230 -5.52171 -2.72462 0.61398 0.86498 2.93461 3.18670 3.52705 3.57113 3.62146 3.63714 3.66171 4.21263 4.43918 4.53415 4.73446 4.77038 4.81852 4.90598 4.94231 4.99151 5.15259 5.36109 5.39709 5.52872 5.58093 5.65293 5.70234 5.73201 5.76956 5.80280 5.84118 5.87527 5.97295 6.05651 6.08030 6.09528 6.11492 6.31981 6.43301 6.43762 6.55924 6.77174 6.86575 7.01876 7.32713 7.82067 7.93279 8.65011 8.79824 9.77453 10.34186 10.69317 11.72269 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008713 B = 0.005083 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.779618 B = 5506.780122 C = 7783.032389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.693 5.693 5 C -0.185 4.185 6 H 0.064 0.936 7 C -0.025 4.025 8 N -0.943 5.943 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.068 0.932 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.101 3.899 19 N -0.607 5.607 20 C 0.515 3.485 21 O -0.417 6.417 22 C -0.083 4.083 23 C -0.075 4.075 24 C -0.130 4.130 25 C 0.072 3.928 26 F -0.130 7.130 27 C 0.065 3.935 28 F -0.128 7.128 29 C -0.084 4.084 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.377 0.623 34 H 0.248 0.752 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 2.364 -19.126 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.076 0.924 4 N -0.333 5.333 5 C -0.317 4.317 6 H 0.082 0.918 7 C -0.219 4.219 8 N -0.595 5.595 9 Si 0.730 3.270 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.224 1.224 13 C 0.046 3.954 14 H 0.086 0.914 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.022 4.022 19 N -0.344 5.344 20 C 0.298 3.702 21 O -0.284 6.284 22 C -0.086 4.086 23 C -0.094 4.094 24 C -0.148 4.148 25 C 0.052 3.948 26 F -0.109 7.109 27 C 0.045 3.955 28 F -0.107 7.107 29 C -0.103 4.103 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.211 0.789 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.254 2.770 -18.348 19.286 hybrid contribution 0.653 0.302 0.956 1.196 sum 5.907 3.072 -17.392 18.623 Atomic orbital electron populations 1.22576 0.99588 1.00733 1.00032 1.20445 0.90632 0.96785 0.85171 0.92363 1.42264 1.71254 1.18285 1.01498 1.19068 1.29645 0.98838 0.84156 0.91823 1.24555 1.02941 0.97123 0.97284 1.69648 1.48426 1.13793 1.27602 0.86220 0.76890 0.78317 0.85534 1.20932 1.22488 1.22435 1.21523 0.78538 0.99741 0.95641 0.91375 1.22037 0.99801 1.00952 0.93917 1.21531 0.95448 1.00766 0.97947 1.21908 0.96139 1.01542 0.97610 1.21873 0.96942 0.99071 0.84339 1.47761 1.09525 1.57635 1.19476 1.18149 0.85274 0.82210 0.84546 1.91377 1.66587 1.47224 1.23177 1.20193 0.96042 0.93015 0.99394 1.21307 0.91741 1.00005 0.96351 1.20992 0.97025 0.94175 1.02644 1.17818 0.78443 0.93719 1.04827 1.91520 1.32792 1.93933 1.92608 1.17486 0.92715 0.79277 1.06030 1.91533 1.89859 1.35854 1.93444 1.21062 0.93237 0.97546 0.98502 0.94348 0.93624 0.92655 0.78928 0.94252 0.90389 0.91637 0.92067 0.91895 0.91637 0.91221 0.89688 0.91638 0.83617 0.83328 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.60 37.16 0.32 -2.69 16 2 C 0.18 3.52 1.84 -67.93 -0.13 3.40 16 3 H 0.06 1.27 6.27 -51.93 -0.33 0.94 16 4 N -0.69 -17.25 3.27 -53.43 -0.17 -17.42 16 5 C -0.19 -5.25 8.32 -15.06 -0.13 -5.37 16 6 H 0.06 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 8 N -0.94 -29.34 13.06 55.49 0.72 -28.61 16 9 Si 0.90 23.70 29.55 -169.99 -5.02 18.67 16 10 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 13 C 0.15 2.28 2.62 -67.60 -0.18 2.11 16 14 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 15 C -0.13 -1.51 4.40 -26.60 -0.12 -1.63 16 16 C -0.12 -1.11 5.88 -26.67 -0.16 -1.27 16 17 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 18 C 0.10 1.04 5.43 -3.71 -0.02 1.02 16 19 N -0.61 -8.77 2.97 -166.38 -0.49 -9.27 16 20 C 0.51 8.96 6.96 -12.38 -0.09 8.87 16 21 O -0.42 -9.44 10.11 5.31 0.05 -9.38 16 22 C -0.08 -1.19 4.93 -104.97 -0.52 -1.71 16 23 C -0.08 -0.88 7.39 -39.19 -0.29 -1.17 16 24 C -0.13 -1.36 10.01 -39.59 -0.40 -1.75 16 25 C 0.07 0.90 7.31 -39.23 -0.29 0.61 16 26 F -0.13 -1.66 17.17 2.25 0.04 -1.62 16 27 C 0.07 0.88 7.30 -39.43 -0.29 0.59 16 28 F -0.13 -1.82 17.18 2.25 0.04 -1.78 16 29 C -0.08 -1.18 9.72 -39.12 -0.38 -1.56 16 30 H 0.04 0.55 6.45 -51.93 -0.33 0.22 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.09 7.98 -51.92 -0.41 0.68 16 33 H 0.38 10.15 7.68 -40.82 -0.31 9.84 16 34 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.88 6.71 -51.93 -0.35 0.53 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.79 4.68 -51.93 -0.24 0.55 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.15 1.49 7.23 -52.49 -0.38 1.11 16 44 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -33.21 361.27 -8.43 -41.64 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.13 Total: 5.07 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.90 Total: -2.74 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.06 Total: -55.30 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.05 Total: -9.38 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.21 -8.43 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316879187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.812 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds