Wall clock time and date at job start Tue Mar 31 2020 20:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46799 * 2 1 4 4 N 1.46496 * 109.47106 * 119.99988 * 2 1 3 5 5 C 1.36941 * 120.00017 * 286.88281 * 4 2 1 6 6 H 1.08004 * 119.99717 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00096 * 180.27504 * 5 4 2 8 8 N 1.31622 * 120.00100 * 359.72678 * 7 5 4 9 9 Si 1.86804 * 120.00214 * 179.72659 * 7 5 4 10 10 H 1.48504 * 109.46661 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47430 * 120.00210 * 9 7 5 12 12 H 1.48502 * 109.47154 * 240.00423 * 9 7 5 13 13 C 1.52998 * 109.47009 * 240.00067 * 2 1 3 14 14 H 1.09000 * 109.58274 * 286.85263 * 13 2 1 15 15 C 1.53191 * 109.58958 * 47.13019 * 13 2 1 16 16 C 1.53068 * 109.29621 * 174.28105 * 15 13 2 17 17 C 1.53043 * 109.65759 * 298.84957 * 16 15 13 18 18 C 1.53184 * 109.31281 * 61.30155 * 17 16 15 19 19 N 1.46919 * 109.58770 * 166.56882 * 13 2 1 20 20 C 1.34780 * 120.62851 * 6.58066 * 19 13 2 21 21 O 1.21568 * 120.00210 * 3.21850 * 20 19 13 22 22 C 1.47732 * 119.99742 * 183.22485 * 20 19 13 23 23 C 1.39655 * 120.10711 * 307.83612 * 22 20 19 24 24 C 1.37855 * 119.92142 * 179.72703 * 23 22 20 25 25 C 1.38607 * 120.14694 * 0.57679 * 24 23 22 26 26 F 1.35095 * 119.88478 * 179.72296 * 25 24 23 27 27 C 1.38828 * 120.22231 * 359.70079 * 25 24 23 28 28 F 1.35099 * 119.96496 * 180.02562 * 27 25 24 29 29 C 1.38062 * 120.07579 * 359.97438 * 27 25 24 30 30 H 1.08994 * 109.47596 * 60.00092 * 1 2 3 31 31 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47213 * 300.00213 * 1 2 3 33 33 H 0.96992 * 120.00240 * 106.88561 * 4 2 1 34 34 H 0.97000 * 119.99885 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.49703 * 294.37758 * 15 13 2 36 36 H 1.09003 * 109.49541 * 54.47031 * 15 13 2 37 37 H 1.08999 * 109.45348 * 178.76319 * 16 15 13 38 38 H 1.08999 * 109.33465 * 58.86708 * 16 15 13 39 39 H 1.09000 * 109.50043 * 301.34769 * 17 16 15 40 40 H 1.08997 * 109.49685 * 181.25159 * 17 16 15 41 41 H 1.09001 * 109.58856 * 185.57793 * 18 17 16 42 42 H 1.09002 * 109.70857 * 65.22308 * 18 17 16 43 43 H 1.08000 * 120.03744 * 0.02723 * 23 22 20 44 44 H 1.08000 * 119.91899 * 180.29865 * 24 23 22 45 45 H 1.07997 * 120.07965 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.9218 -0.0880 2.4220 6 1 1.4854 0.8963 2.5070 7 6 2.3897 -0.7399 3.5546 8 7 2.9212 -1.9396 3.4511 9 14 2.2651 0.0853 5.2259 10 1 1.6326 1.4201 5.0728 11 1 1.4386 -0.7527 6.1313 12 1 3.6245 0.2443 5.8021 13 6 2.0400 -0.7212 -1.2492 14 1 1.8810 -1.7942 -1.1421 15 6 1.2854 -0.2109 -2.4809 16 6 1.8963 -0.8297 -3.7406 17 6 3.3633 -0.4104 -3.8608 18 6 4.1388 -0.9256 -2.6444 19 7 3.4735 -0.4506 -1.4235 20 6 4.1650 0.2210 -0.4816 21 8 3.6172 0.5581 0.5500 22 6 5.5886 0.5478 -0.7028 23 6 6.4895 -0.4557 -1.0658 24 6 7.8160 -0.1455 -1.2768 25 6 8.2599 1.1579 -1.1179 26 9 9.5621 1.4549 -1.3205 27 6 7.3708 2.1591 -0.7516 28 9 7.8090 3.4279 -0.5986 29 6 6.0389 1.8600 -0.5444 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.4100 -1.5746 1.1198 34 1 3.2485 -2.3950 4.2425 35 1 0.2351 -0.4930 -2.4068 36 1 1.3682 0.8746 -2.5343 37 1 1.3473 -0.4855 -4.6171 38 1 1.8333 -1.9160 -3.6761 39 1 3.4288 0.6770 -3.9002 40 1 3.7894 -0.8341 -4.7701 41 1 5.1603 -0.5466 -2.6749 42 1 4.1531 -2.0155 -2.6523 43 1 6.1463 -1.4727 -1.1858 44 1 8.5117 -0.9208 -1.5622 45 1 5.3471 2.6390 -0.2599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316879187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:53 Heat of formation + Delta-G solvation = -62.200591 kcal Electronic energy + Delta-G solvation = -30872.790268 eV Core-core repulsion = 26527.521658 eV Total energy + Delta-G solvation = -4345.268610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.61229 -49.68908 -41.78450 -39.71008 -38.07234 -36.83143 -34.26521 -33.69168 -32.16706 -31.66562 -31.29110 -29.33027 -26.75841 -25.93734 -24.72850 -24.20271 -23.98002 -21.95607 -21.38329 -20.56682 -19.20331 -18.84718 -18.38139 -18.20858 -17.45984 -17.03149 -16.83676 -16.68317 -16.10497 -15.87669 -15.72431 -15.53477 -15.44823 -15.24163 -15.09236 -14.83021 -14.61107 -14.21251 -14.07099 -13.69754 -13.66367 -13.52923 -13.41884 -13.10606 -12.96081 -12.83359 -12.55895 -12.49719 -12.31058 -12.07866 -11.89725 -11.66081 -11.57515 -11.37309 -11.16955 -10.78683 -10.26107 -10.06054 -9.68729 -9.38401 -8.57406 -7.77071 -4.93604 -0.43572 -0.13226 1.43072 1.44795 1.52839 1.78402 2.03365 2.37132 2.65097 2.65607 3.19396 3.39534 3.52006 3.57065 3.81711 3.87905 3.93602 3.95257 4.05708 4.17652 4.35352 4.40454 4.41487 4.56860 4.60849 4.67271 4.74393 4.77448 4.79995 4.83604 4.90922 4.97969 5.07052 5.09942 5.12806 5.18221 5.23182 5.31856 5.45612 5.50867 5.55896 5.59077 5.64583 5.92941 6.45503 6.61475 7.47664 7.54468 8.31249 8.53598 9.48393 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008713 B = 0.005083 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.779618 B = 5506.780122 C = 7783.032389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.035 0.965 4 N -0.696 5.696 5 C -0.165 4.165 6 H 0.054 0.946 7 C -0.090 4.090 8 N -0.977 5.977 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.305 1.305 13 C 0.152 3.848 14 H 0.063 0.937 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.093 3.907 19 N -0.602 5.602 20 C 0.514 3.486 21 O -0.487 6.487 22 C -0.099 4.099 23 C -0.065 4.065 24 C -0.107 4.107 25 C 0.074 3.926 26 F -0.130 7.130 27 C 0.054 3.946 28 F -0.136 7.136 29 C -0.092 4.092 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.365 0.635 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.166 0.834 44 H 0.189 0.811 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 1.501 -22.264 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 H 0.053 0.947 4 N -0.335 5.335 5 C -0.298 4.298 6 H 0.072 0.928 7 C -0.280 4.280 8 N -0.632 5.632 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.233 1.233 13 C 0.049 3.951 14 H 0.081 0.919 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.167 4.167 18 C -0.029 4.029 19 N -0.337 5.337 20 C 0.300 3.700 21 O -0.359 6.359 22 C -0.103 4.103 23 C -0.084 4.084 24 C -0.126 4.126 25 C 0.054 3.946 26 F -0.108 7.108 27 C 0.034 3.966 28 F -0.115 7.115 29 C -0.112 4.112 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.196 0.804 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.183 0.817 44 H 0.206 0.794 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.939 1.930 -21.580 22.466 hybrid contribution 0.481 0.636 1.757 1.929 sum 6.420 2.567 -19.824 20.995 Atomic orbital electron populations 1.22435 0.98012 1.00914 1.00561 1.20551 0.91493 0.95710 0.85412 0.94691 1.42316 1.71302 1.17736 1.02118 1.19228 1.27010 0.97887 0.85699 0.92825 1.25139 1.04612 0.98116 1.00142 1.69777 1.50741 1.15063 1.27635 0.85344 0.76247 0.77805 0.82271 1.20104 1.22404 1.23299 1.21408 0.79660 0.98795 0.95266 0.91946 1.21989 0.99935 1.00704 0.93365 1.21528 0.95763 1.01014 0.96946 1.21902 0.95697 1.01280 0.97802 1.22231 0.97582 1.00079 0.82964 1.47899 1.09257 1.56339 1.20194 1.18642 0.86379 0.80996 0.83992 1.91334 1.68232 1.50515 1.25866 1.20023 0.94962 0.93888 1.01424 1.21500 0.91752 1.00023 0.95111 1.21329 0.96857 0.94015 1.00370 1.17978 0.78174 0.94124 1.04326 1.91526 1.32746 1.94026 1.92542 1.17563 0.92759 0.79409 1.06909 1.91508 1.89864 1.36489 1.93626 1.20956 0.93531 0.97517 0.99202 0.90578 0.93517 0.95323 0.80389 0.95082 0.89503 0.92143 0.89986 0.91176 0.92299 0.88173 0.88438 0.90000 0.81654 0.79361 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 8.60 71.98 0.62 -5.04 16 2 C 0.18 7.09 1.84 44.99 0.08 7.17 16 3 H 0.04 1.60 6.27 -2.39 -0.01 1.58 16 4 N -0.70 -35.96 3.27 -322.96 -1.05 -37.02 16 5 C -0.16 -9.71 8.32 84.03 0.70 -9.01 16 6 H 0.05 3.20 7.83 -2.91 -0.02 3.18 16 7 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 8 N -0.98 -62.82 13.06 21.65 0.28 -62.53 16 9 Si 0.95 50.42 29.55 68.60 2.03 52.45 16 10 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 12 H -0.30 -16.39 7.11 99.48 0.71 -15.69 16 13 C 0.15 4.56 2.62 44.97 0.12 4.68 16 14 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 15 C -0.12 -2.58 4.40 30.68 0.13 -2.44 16 16 C -0.12 -1.69 5.88 30.63 0.18 -1.51 16 17 C -0.13 -1.76 6.08 30.67 0.19 -1.57 16 18 C 0.09 1.63 5.43 86.36 0.47 2.10 16 19 N -0.60 -16.86 2.97 -798.56 -2.38 -19.23 16 20 C 0.51 18.23 6.96 86.75 0.60 18.84 16 21 O -0.49 -23.18 10.11 -3.93 -0.04 -23.22 16 22 C -0.10 -2.83 4.93 -20.09 -0.10 -2.93 16 23 C -0.07 -1.36 7.39 22.52 0.17 -1.20 16 24 C -0.11 -1.87 10.01 22.27 0.22 -1.65 16 25 C 0.07 1.68 7.31 22.50 0.16 1.85 16 26 F -0.13 -3.02 17.17 44.97 0.77 -2.24 16 27 C 0.05 1.43 7.30 22.37 0.16 1.60 16 28 F -0.14 -3.89 17.18 44.97 0.77 -3.12 16 29 C -0.09 -2.66 9.72 22.57 0.22 -2.44 16 30 H 0.08 2.10 6.45 -2.39 -0.02 2.08 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.14 7.98 -2.38 -0.02 1.12 16 33 H 0.36 20.34 7.68 -92.71 -0.71 19.63 16 34 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.09 1.70 6.71 -2.39 -0.02 1.69 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.48 4.68 -2.39 -0.01 1.47 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.17 2.82 7.23 -2.91 -0.02 2.79 16 44 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -76.78 361.27 5.10 -71.69 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.32 Total: 19.86 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 4.40 Total: 3.36 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -3.15 Total: -118.79 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.04 Total: -23.22 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 1.54 Total: -5.36 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.03 Total: 52.45 kcal Total: -76.78 5.10 -71.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316879187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.486 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds