Wall clock time and date at job start Tue Mar 31 2020 20:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47645 * 2 1 4 4 N 1.46500 * 109.47255 * 239.99390 * 2 1 3 5 5 C 1.36933 * 119.99737 * 77.84137 * 4 2 1 6 6 H 1.08005 * 120.00324 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00077 * 179.72558 * 5 4 2 8 8 N 1.31614 * 119.99898 * 0.27755 * 7 5 4 9 9 Si 1.86799 * 119.99861 * 180.27467 * 7 5 4 10 10 H 1.48497 * 109.47474 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46640 * 120.00315 * 9 7 5 12 12 H 1.48496 * 109.47054 * 239.99808 * 9 7 5 13 13 C 1.53005 * 109.46971 * 119.99714 * 2 1 3 14 14 H 1.09000 * 109.58457 * 69.78217 * 13 2 1 15 15 C 1.53191 * 109.58747 * 309.49888 * 13 2 1 16 16 C 1.53034 * 109.31415 * 185.57524 * 15 13 2 17 17 C 1.53043 * 109.53718 * 61.36534 * 16 15 13 18 18 C 1.53187 * 109.31501 * 298.63409 * 17 16 15 19 19 N 1.46920 * 109.58815 * 190.20998 * 13 2 1 20 20 C 1.34782 * 120.63140 * 353.39334 * 19 13 2 21 21 O 1.21571 * 120.00043 * 6.46515 * 20 19 13 22 22 C 1.47725 * 120.00212 * 186.46110 * 20 19 13 23 23 C 1.39647 * 120.10858 * 38.23138 * 22 20 19 24 24 C 1.37851 * 119.92509 * 179.69642 * 23 22 20 25 25 C 1.38613 * 120.14676 * 0.57985 * 24 23 22 26 26 F 1.35097 * 119.89118 * 179.69636 * 25 24 23 27 27 C 1.38838 * 120.21848 * 359.72082 * 25 24 23 28 28 F 1.35093 * 119.96327 * 179.97438 * 27 25 24 29 29 C 1.38054 * 120.07046 * 359.97438 * 27 25 24 30 30 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47461 * 300.00388 * 1 2 3 32 32 H 1.09004 * 109.46949 * 60.00051 * 1 2 3 33 33 H 0.97002 * 120.00443 * 257.84448 * 4 2 1 34 34 H 0.96998 * 120.00009 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.49900 * 305.53283 * 15 13 2 36 36 H 1.09003 * 109.49287 * 65.59302 * 15 13 2 37 37 H 1.09001 * 109.46225 * 181.38643 * 16 15 13 38 38 H 1.09007 * 109.46275 * 301.34773 * 16 15 13 39 39 H 1.08998 * 109.49683 * 58.58788 * 17 16 15 40 40 H 1.09002 * 109.49895 * 178.68079 * 17 16 15 41 41 H 1.09001 * 109.59242 * 174.41678 * 18 17 16 42 42 H 1.08996 * 109.59050 * 294.85090 * 18 17 16 43 43 H 1.08002 * 120.03979 * 359.97438 * 23 22 20 44 44 H 1.07995 * 119.93203 * 180.27641 * 24 23 22 45 45 H 1.08007 * 120.07170 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.0110 -0.0512 -2.4069 6 1 1.6457 0.9625 -2.4801 7 6 2.4791 -0.7037 -3.5393 8 7 2.9248 -1.9388 -3.4501 9 14 2.4763 0.1715 -5.1896 10 1 1.9299 1.5421 -5.0222 11 1 3.8652 0.2527 -5.7090 12 1 1.6323 -0.5847 -6.1494 13 6 2.0399 -0.7212 1.2493 14 1 1.8271 -1.7872 1.1683 15 6 1.3456 -0.1518 2.4904 16 6 1.9586 -0.7776 3.7453 17 6 3.4459 -0.4243 3.8190 18 6 4.1641 -0.9968 2.5931 19 7 3.4885 -0.5139 1.3809 20 6 4.1844 0.1075 0.4083 21 8 3.5998 0.6061 -0.5338 22 6 5.6577 0.1827 0.4869 23 6 6.3898 -0.9040 0.9699 24 6 7.7649 -0.8320 1.0358 25 6 8.4216 0.3209 0.6349 26 9 9.7690 0.3881 0.7074 27 6 7.6993 1.4072 0.1596 28 9 8.3447 2.5285 -0.2293 29 6 6.3224 1.3426 0.0839 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.3468 -1.6011 -1.1304 34 1 3.2521 -2.3946 -4.2413 35 1 1.4814 0.9293 2.5195 36 1 0.2813 -0.3837 2.4504 37 1 1.4496 -0.3925 4.6289 38 1 1.8443 -1.8608 3.7038 39 1 3.5620 0.6593 3.8356 40 1 3.8766 -0.8507 4.7250 41 1 5.2023 -0.6649 2.5895 42 1 4.1265 -2.0857 2.6229 43 1 5.8796 -1.8014 1.2874 44 1 8.3314 -1.6740 1.4052 45 1 5.7605 2.1875 -0.2863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316879189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:57 Heat of formation + Delta-G solvation = -39.811897 kcal Electronic energy + Delta-G solvation = -30975.369176 eV Core-core repulsion = 26631.071413 eV Total energy + Delta-G solvation = -4344.297764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.51697 -48.58733 -40.58065 -38.57968 -36.85723 -35.20965 -32.84603 -32.25519 -31.07947 -30.38779 -29.84274 -27.83054 -25.49447 -24.32970 -23.57794 -23.10969 -22.59381 -20.85319 -20.05310 -19.44623 -17.88615 -17.55629 -17.11315 -16.69895 -16.36007 -15.77996 -15.55124 -15.01369 -14.96813 -14.77918 -14.58159 -14.31258 -14.24111 -13.99469 -13.74716 -13.50697 -13.19368 -13.02633 -12.78456 -12.55303 -12.35830 -12.17253 -12.05516 -11.95644 -11.45389 -11.34220 -11.16210 -10.89889 -10.87365 -10.69203 -10.63463 -10.40329 -10.14172 -9.74499 -9.45209 -9.18123 -8.80029 -8.70292 -8.35036 -8.07569 -6.57324 -5.52959 -2.73953 0.62822 0.92158 2.94727 3.23249 3.56061 3.62085 3.63622 3.68232 3.71094 4.25777 4.47395 4.58326 4.73490 4.77022 4.83802 4.92623 4.97118 5.03990 5.15648 5.36410 5.40547 5.54856 5.60486 5.70277 5.72847 5.75470 5.77013 5.82850 5.84915 5.87753 5.98389 6.06504 6.08610 6.12413 6.12722 6.33879 6.43589 6.45348 6.61166 6.75619 6.88218 7.03599 7.34782 7.85187 7.94581 8.63922 8.83321 9.76374 10.31752 10.67172 11.71304 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.005554 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.571262 B = 5040.460835 C = 7596.791625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.176 3.824 3 H 0.070 0.930 4 N -0.697 5.697 5 C -0.181 4.181 6 H 0.065 0.935 7 C -0.027 4.027 8 N -0.944 5.944 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.067 0.933 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.099 3.901 19 N -0.609 5.609 20 C 0.522 3.478 21 O -0.422 6.422 22 C -0.085 4.085 23 C -0.076 4.076 24 C -0.132 4.132 25 C 0.074 3.926 26 F -0.130 7.130 27 C 0.063 3.937 28 F -0.129 7.129 29 C -0.078 4.078 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.377 0.623 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 1.558 18.708 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.066 3.934 3 H 0.087 0.913 4 N -0.337 5.337 5 C -0.313 4.313 6 H 0.083 0.917 7 C -0.220 4.220 8 N -0.596 5.596 9 Si 0.730 3.270 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.225 1.225 13 C 0.045 3.955 14 H 0.085 0.915 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.024 4.024 19 N -0.346 5.346 20 C 0.306 3.694 21 O -0.289 6.289 22 C -0.089 4.089 23 C -0.095 4.095 24 C -0.151 4.151 25 C 0.053 3.947 26 F -0.109 7.109 27 C 0.043 3.957 28 F -0.107 7.107 29 C -0.098 4.098 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.222 2.051 17.967 18.823 hybrid contribution 0.709 0.147 -1.054 1.278 sum 5.931 2.197 16.913 18.057 Atomic orbital electron populations 1.22601 0.99835 1.00605 1.00013 1.20552 0.90482 0.97394 0.84955 0.91293 1.42339 1.74181 1.14267 1.02907 1.19069 1.31192 0.96275 0.84785 0.91735 1.24561 1.03376 0.96636 0.97431 1.69641 1.50630 1.11458 1.27824 0.86217 0.76898 0.78536 0.85300 1.20913 1.22451 1.22505 1.21545 0.78323 0.99729 0.95871 0.91503 1.22021 0.99986 1.00802 0.93927 1.21525 0.95323 1.00840 0.97980 1.21923 0.96202 1.01547 0.97569 1.21994 0.97155 0.98708 0.84566 1.47676 1.08134 1.60195 1.18581 1.18019 0.85550 0.82417 0.83377 1.91235 1.67370 1.40526 1.29794 1.20160 0.95522 0.93917 0.99310 1.21418 0.92767 0.98749 0.96573 1.20981 0.94956 0.96725 1.02431 1.17835 0.77372 0.95219 1.04244 1.91518 1.28477 1.96703 1.94181 1.17492 0.90665 0.83535 1.04021 1.91529 1.81434 1.48936 1.88812 1.21107 0.91147 0.99669 0.97882 0.93794 0.94384 0.92682 0.79016 0.94252 0.91590 0.90520 0.92095 0.91915 0.91615 0.91221 0.89417 0.91708 0.83483 0.83385 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.77 37.16 0.33 -2.69 16 2 C 0.18 3.44 1.80 -67.93 -0.12 3.32 16 3 H 0.07 1.49 6.21 -51.93 -0.32 1.17 16 4 N -0.70 -17.22 3.36 -53.43 -0.18 -17.40 16 5 C -0.18 -5.11 8.19 -15.06 -0.12 -5.24 16 6 H 0.06 1.85 7.83 -52.48 -0.41 1.43 16 7 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 8 N -0.94 -29.20 13.06 55.49 0.72 -28.48 16 9 Si 0.90 23.70 29.55 -169.99 -5.02 18.68 16 10 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 13 C 0.15 2.28 2.60 -67.60 -0.18 2.10 16 14 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.13 -1.52 4.52 -26.61 -0.12 -1.64 16 16 C -0.12 -1.11 5.88 -26.69 -0.16 -1.26 16 17 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 18 C 0.10 1.02 4.82 -3.71 -0.02 1.00 16 19 N -0.61 -8.85 2.97 -166.37 -0.49 -9.34 16 20 C 0.52 9.22 7.03 -12.38 -0.09 9.13 16 21 O -0.42 -9.47 9.75 5.30 0.05 -9.42 16 22 C -0.09 -1.28 5.18 -104.97 -0.54 -1.82 16 23 C -0.08 -0.92 7.37 -39.20 -0.29 -1.21 16 24 C -0.13 -1.44 10.01 -39.58 -0.40 -1.84 16 25 C 0.07 0.96 7.31 -39.22 -0.29 0.67 16 26 F -0.13 -1.72 17.17 2.25 0.04 -1.69 16 27 C 0.06 0.90 7.30 -39.43 -0.29 0.61 16 28 F -0.13 -1.91 17.17 2.25 0.04 -1.88 16 29 C -0.08 -1.17 9.60 -39.13 -0.38 -1.54 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.55 6.45 -51.93 -0.33 0.22 16 32 H 0.05 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.38 10.05 7.73 -40.82 -0.32 9.73 16 34 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.86 6.69 -51.93 -0.35 0.51 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.82 4.69 -51.93 -0.24 0.57 16 42 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.15 1.52 6.39 -52.49 -0.34 1.18 16 44 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.15 2.30 8.05 -52.48 -0.42 1.88 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -32.91 359.89 -8.42 -41.34 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.09 Total: 5.41 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.91 Total: -2.64 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.05 Total: -55.22 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.05 Total: -9.42 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.91 -8.42 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316879189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.524 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds