Wall clock time and date at job start Tue Mar 31 2020 20:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47645 * 2 1 4 4 N 1.46500 * 109.47255 * 239.99390 * 2 1 3 5 5 C 1.36933 * 119.99737 * 77.84137 * 4 2 1 6 6 H 1.08005 * 120.00324 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00077 * 179.72558 * 5 4 2 8 8 N 1.31614 * 119.99898 * 0.27755 * 7 5 4 9 9 Si 1.86799 * 119.99861 * 180.27467 * 7 5 4 10 10 H 1.48497 * 109.47474 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46640 * 120.00315 * 9 7 5 12 12 H 1.48496 * 109.47054 * 239.99808 * 9 7 5 13 13 C 1.53005 * 109.46971 * 119.99714 * 2 1 3 14 14 H 1.09000 * 109.58457 * 69.78217 * 13 2 1 15 15 C 1.53191 * 109.58747 * 309.49888 * 13 2 1 16 16 C 1.53034 * 109.31415 * 185.57524 * 15 13 2 17 17 C 1.53043 * 109.53718 * 61.36534 * 16 15 13 18 18 C 1.53187 * 109.31501 * 298.63409 * 17 16 15 19 19 N 1.46920 * 109.58815 * 190.20998 * 13 2 1 20 20 C 1.34782 * 120.63140 * 353.39334 * 19 13 2 21 21 O 1.21571 * 120.00043 * 6.46515 * 20 19 13 22 22 C 1.47725 * 120.00212 * 186.46110 * 20 19 13 23 23 C 1.39647 * 120.10858 * 38.23138 * 22 20 19 24 24 C 1.37851 * 119.92509 * 179.69642 * 23 22 20 25 25 C 1.38613 * 120.14676 * 0.57985 * 24 23 22 26 26 F 1.35097 * 119.89118 * 179.69636 * 25 24 23 27 27 C 1.38838 * 120.21848 * 359.72082 * 25 24 23 28 28 F 1.35093 * 119.96327 * 179.97438 * 27 25 24 29 29 C 1.38054 * 120.07046 * 359.97438 * 27 25 24 30 30 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47461 * 300.00388 * 1 2 3 32 32 H 1.09004 * 109.46949 * 60.00051 * 1 2 3 33 33 H 0.97002 * 120.00443 * 257.84448 * 4 2 1 34 34 H 0.96998 * 120.00009 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.49900 * 305.53283 * 15 13 2 36 36 H 1.09003 * 109.49287 * 65.59302 * 15 13 2 37 37 H 1.09001 * 109.46225 * 181.38643 * 16 15 13 38 38 H 1.09007 * 109.46275 * 301.34773 * 16 15 13 39 39 H 1.08998 * 109.49683 * 58.58788 * 17 16 15 40 40 H 1.09002 * 109.49895 * 178.68079 * 17 16 15 41 41 H 1.09001 * 109.59242 * 174.41678 * 18 17 16 42 42 H 1.08996 * 109.59050 * 294.85090 * 18 17 16 43 43 H 1.08002 * 120.03979 * 359.97438 * 23 22 20 44 44 H 1.07995 * 119.93203 * 180.27641 * 24 23 22 45 45 H 1.08007 * 120.07170 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.0110 -0.0512 -2.4069 6 1 1.6457 0.9625 -2.4801 7 6 2.4791 -0.7037 -3.5393 8 7 2.9248 -1.9388 -3.4501 9 14 2.4763 0.1715 -5.1896 10 1 1.9299 1.5421 -5.0222 11 1 3.8652 0.2527 -5.7090 12 1 1.6323 -0.5847 -6.1494 13 6 2.0399 -0.7212 1.2493 14 1 1.8271 -1.7872 1.1683 15 6 1.3456 -0.1518 2.4904 16 6 1.9586 -0.7776 3.7453 17 6 3.4459 -0.4243 3.8190 18 6 4.1641 -0.9968 2.5931 19 7 3.4885 -0.5139 1.3809 20 6 4.1844 0.1075 0.4083 21 8 3.5998 0.6061 -0.5338 22 6 5.6577 0.1827 0.4869 23 6 6.3898 -0.9040 0.9699 24 6 7.7649 -0.8320 1.0358 25 6 8.4216 0.3209 0.6349 26 9 9.7690 0.3881 0.7074 27 6 7.6993 1.4072 0.1596 28 9 8.3447 2.5285 -0.2293 29 6 6.3224 1.3426 0.0839 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.3468 -1.6011 -1.1304 34 1 3.2521 -2.3946 -4.2413 35 1 1.4814 0.9293 2.5195 36 1 0.2813 -0.3837 2.4504 37 1 1.4496 -0.3925 4.6289 38 1 1.8443 -1.8608 3.7038 39 1 3.5620 0.6593 3.8356 40 1 3.8766 -0.8507 4.7250 41 1 5.2023 -0.6649 2.5895 42 1 4.1265 -2.0857 2.6229 43 1 5.8796 -1.8014 1.2874 44 1 8.3314 -1.6740 1.4052 45 1 5.7605 2.1875 -0.2863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316879189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:56 Heat of formation + Delta-G solvation = -59.394233 kcal Electronic energy + Delta-G solvation = -30976.218330 eV Core-core repulsion = 26631.071413 eV Total energy + Delta-G solvation = -4345.146917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.61480 -49.69197 -41.79816 -39.69219 -38.06414 -36.81218 -34.28651 -33.71682 -32.14858 -31.66933 -31.23790 -29.35629 -26.72548 -25.95022 -24.73080 -24.20900 -23.92318 -21.95663 -21.40337 -20.63394 -19.16815 -18.83022 -18.38947 -18.20268 -17.45809 -16.95707 -16.81703 -16.62511 -16.10986 -15.94174 -15.73282 -15.59044 -15.44841 -15.22093 -15.07782 -14.81753 -14.56683 -14.18144 -14.02122 -13.79565 -13.62512 -13.53005 -13.40050 -13.09205 -12.96520 -12.83654 -12.52390 -12.50888 -12.29619 -12.07658 -11.86735 -11.65477 -11.59174 -11.33142 -11.18111 -10.80901 -10.23175 -9.97841 -9.68401 -9.38239 -8.57942 -7.77182 -4.94481 -0.46624 -0.12487 1.42387 1.44266 1.52145 1.79170 2.07218 2.47162 2.65135 2.65582 3.19470 3.41105 3.52859 3.57125 3.81919 3.88501 3.95397 3.95917 4.06323 4.19020 4.36608 4.41915 4.42614 4.57951 4.62014 4.68237 4.75021 4.77558 4.81149 4.83994 4.93101 4.98286 5.05965 5.10708 5.13347 5.19564 5.24846 5.32601 5.47819 5.51787 5.56800 5.61230 5.66377 5.95233 6.45503 6.64158 7.48873 7.55886 8.29777 8.52738 9.47907 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.005554 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.571262 B = 5040.460835 C = 7596.791625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.173 3.827 3 H 0.045 0.955 4 N -0.701 5.701 5 C -0.159 4.159 6 H 0.053 0.947 7 C -0.090 4.090 8 N -0.976 5.976 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.305 1.305 12 H -0.297 1.297 13 C 0.152 3.848 14 H 0.065 0.935 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.090 3.910 19 N -0.603 5.603 20 C 0.519 3.481 21 O -0.489 6.489 22 C -0.104 4.104 23 C -0.064 4.064 24 C -0.110 4.110 25 C 0.076 3.924 26 F -0.130 7.130 27 C 0.049 3.951 28 F -0.137 7.137 29 C -0.090 4.090 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.365 0.635 34 H 0.240 0.760 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.171 0.829 44 H 0.191 0.809 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 0.276 22.029 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.065 3.935 3 H 0.063 0.937 4 N -0.339 5.339 5 C -0.292 4.292 6 H 0.071 0.929 7 C -0.280 4.280 8 N -0.631 5.631 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.234 1.234 12 H -0.225 1.225 13 C 0.049 3.951 14 H 0.083 0.917 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.167 4.167 18 C -0.031 4.031 19 N -0.339 5.339 20 C 0.305 3.695 21 O -0.362 6.362 22 C -0.108 4.108 23 C -0.082 4.082 24 C -0.128 4.128 25 C 0.056 3.944 26 F -0.108 7.108 27 C 0.029 3.971 28 F -0.116 7.116 29 C -0.110 4.110 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.196 0.804 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.189 0.811 44 H 0.208 0.792 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.813 0.791 21.381 22.171 hybrid contribution 0.570 0.610 -1.909 2.084 sum 6.383 1.401 19.472 20.539 Atomic orbital electron populations 1.22453 0.98282 1.00806 1.00494 1.20643 0.91317 0.96324 0.85229 0.93701 1.42374 1.74367 1.13670 1.03500 1.19183 1.28378 0.95387 0.86238 0.92946 1.25110 1.05169 0.97593 1.00106 1.69762 1.53002 1.12584 1.27798 0.85374 0.76193 0.77954 0.82336 1.20207 1.23368 1.22463 1.21433 0.79251 0.99035 0.95407 0.91727 1.21972 1.00330 1.00324 0.93415 1.21522 0.95546 1.01211 0.96937 1.21917 0.95856 1.01157 0.97811 1.22367 0.97675 0.99942 0.83148 1.47811 1.07943 1.58900 1.19231 1.18508 0.86722 0.81268 0.82952 1.91195 1.68785 1.43811 1.32364 1.20063 0.94298 0.95185 1.01219 1.21650 0.93222 0.98192 0.95153 1.21362 0.94423 0.96780 1.00277 1.18006 0.77366 0.95304 1.03740 1.91525 1.28457 1.96713 1.94114 1.17592 0.90492 0.83998 1.05002 1.91501 1.81461 1.49559 1.89069 1.21002 0.91581 0.99710 0.98689 0.93626 0.90681 0.95389 0.80390 0.95118 0.92346 0.89582 0.90090 0.91014 0.92475 0.88081 0.88258 0.89681 0.81121 0.79187 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 8.77 71.98 0.63 -5.04 16 2 C 0.17 6.90 1.80 44.99 0.08 6.98 16 3 H 0.05 2.04 6.21 -2.39 -0.01 2.03 16 4 N -0.70 -35.82 3.36 -322.94 -1.08 -36.91 16 5 C -0.16 -9.29 8.19 84.04 0.69 -8.60 16 6 H 0.05 3.14 7.83 -2.91 -0.02 3.12 16 7 C -0.09 -5.50 5.50 84.86 0.47 -5.03 16 8 N -0.98 -62.32 13.06 21.65 0.28 -62.03 16 9 Si 0.95 50.49 29.55 68.60 2.03 52.52 16 10 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.31 -16.51 7.11 99.48 0.71 -15.80 16 12 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 13 C 0.15 4.51 2.60 44.98 0.12 4.63 16 14 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 15 C -0.12 -2.57 4.52 30.67 0.14 -2.44 16 16 C -0.11 -1.66 5.88 30.62 0.18 -1.48 16 17 C -0.13 -1.74 6.08 30.67 0.19 -1.56 16 18 C 0.09 1.54 4.82 86.36 0.42 1.96 16 19 N -0.60 -16.87 2.97 -798.54 -2.37 -19.24 16 20 C 0.52 18.67 7.03 86.75 0.61 19.28 16 21 O -0.49 -23.11 9.75 -3.94 -0.04 -23.15 16 22 C -0.10 -3.10 5.18 -20.09 -0.10 -3.20 16 23 C -0.06 -1.36 7.37 22.52 0.17 -1.20 16 24 C -0.11 -2.00 10.01 22.27 0.22 -1.78 16 25 C 0.08 1.82 7.31 22.50 0.16 1.99 16 26 F -0.13 -3.14 17.17 44.97 0.77 -2.37 16 27 C 0.05 1.40 7.30 22.37 0.16 1.57 16 28 F -0.14 -4.17 17.17 44.97 0.77 -3.40 16 29 C -0.09 -2.78 9.60 22.56 0.22 -2.56 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 2.07 6.45 -2.39 -0.02 2.05 16 32 H 0.03 1.11 8.10 -2.38 -0.02 1.09 16 33 H 0.36 20.06 7.73 -92.71 -0.72 19.35 16 34 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.67 6.69 -2.39 -0.02 1.65 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 1.49 4.69 -2.39 -0.01 1.48 16 42 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 43 H 0.17 2.84 6.39 -2.91 -0.02 2.82 16 44 H 0.19 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.14 4.54 8.05 -2.91 -0.02 4.52 16 Total: -1.00 -76.41 359.89 5.02 -71.40 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.31 Total: 19.67 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.35 Total: 3.51 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -3.18 Total: -118.18 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.04 Total: -23.15 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.54 Total: -5.76 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.52 kcal Total: -76.41 5.02 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316879189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.003 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds