Wall clock time and date at job start Tue Mar 31 2020 20:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47229 * 2 1 4 4 N 1.46496 * 109.47552 * 239.99822 * 2 1 3 5 5 C 1.36942 * 120.00278 * 84.99194 * 4 2 1 6 6 H 1.07998 * 119.99324 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00269 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00311 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47130 * 89.99550 * 9 7 5 11 11 H 1.48500 * 109.47106 * 209.99612 * 9 7 5 12 12 H 1.48502 * 109.47325 * 329.99846 * 9 7 5 13 13 C 1.53000 * 109.47081 * 119.99628 * 2 1 3 14 14 H 1.09000 * 109.70040 * 303.16250 * 13 2 1 15 15 C 1.53622 * 109.66246 * 63.75694 * 13 2 1 16 16 C 1.53043 * 109.24129 * 174.55143 * 15 13 2 17 17 C 1.53046 * 109.53640 * 298.50994 * 16 15 13 18 18 C 1.53189 * 109.31543 * 61.36341 * 17 16 15 19 19 N 1.46927 * 109.58451 * 182.80635 * 13 2 1 20 20 C 1.34776 * 120.63157 * 6.62826 * 19 13 2 21 21 O 1.21561 * 120.00009 * 3.52089 * 20 19 13 22 22 C 1.47730 * 119.99894 * 183.51796 * 20 19 13 23 23 C 1.39650 * 120.10974 * 325.44947 * 22 20 19 24 24 C 1.37854 * 119.92819 * 180.02562 * 23 22 20 25 25 C 1.38611 * 120.14247 * 0.02562 * 24 23 22 26 26 F 1.35098 * 119.88457 * 179.97438 * 25 24 23 27 27 C 1.38839 * 120.22091 * 359.67948 * 25 24 23 28 28 F 1.35094 * 119.96441 * 180.32287 * 27 25 24 29 29 C 1.38053 * 120.07045 * 0.60015 * 27 25 24 30 30 H 1.09001 * 109.47244 * 54.93305 * 1 2 3 31 31 H 1.08997 * 109.47116 * 174.92886 * 1 2 3 32 32 H 1.08996 * 109.47021 * 294.93057 * 1 2 3 33 33 H 0.97002 * 119.99992 * 265.00578 * 4 2 1 34 34 H 0.97004 * 120.00638 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.63889 * 54.55697 * 15 13 2 36 36 H 1.08995 * 109.43102 * 294.41181 * 15 13 2 37 37 H 1.08996 * 109.46169 * 178.48923 * 16 15 13 38 38 H 1.09002 * 109.46148 * 58.52660 * 16 15 13 39 39 H 1.09006 * 109.49585 * 301.41145 * 17 16 15 40 40 H 1.08994 * 109.49861 * 181.32147 * 17 16 15 41 41 H 1.09001 * 109.58928 * 185.57985 * 18 17 16 42 42 H 1.09005 * 109.70399 * 65.22261 * 18 17 16 43 43 H 1.07998 * 120.03789 * 359.97438 * 23 22 20 44 44 H 1.07993 * 119.92857 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.07556 * 179.69927 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8925 1.0403 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.7375 -0.0055 -4.6429 9 14 3.0546 -2.4748 -3.4255 10 1 1.8567 -3.2925 -3.7449 11 1 4.1297 -2.7674 -4.4072 12 1 3.5294 -2.8057 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 1.6332 -0.2439 2.1408 15 6 1.6092 -2.1952 1.2073 16 6 2.2370 -2.9379 2.3890 17 6 3.7624 -2.8789 2.2784 18 6 4.2179 -1.4172 2.3290 19 7 3.5077 -0.6642 1.2862 20 6 4.1893 0.0693 0.3841 21 8 3.5886 0.7426 -0.4305 22 6 5.6665 0.0552 0.3853 23 6 6.3651 -0.0526 1.5897 24 6 7.7436 -0.0649 1.5864 25 6 8.4378 0.0299 0.3904 26 9 9.7887 0.0179 0.3934 27 6 7.7493 0.1311 -0.8110 28 9 8.4310 0.2167 -1.9742 29 6 6.3689 0.1501 -0.8178 30 1 -0.3634 0.5904 -0.8411 31 1 -0.3633 -1.0236 -0.0908 32 1 -0.3633 0.4332 0.9319 33 1 2.2491 -1.6318 -1.1525 34 1 3.0602 -0.4630 -5.4351 35 1 1.9433 -2.6480 0.2740 36 1 0.5231 -2.2575 1.2742 37 1 1.9121 -3.9783 2.3780 38 1 1.9222 -2.4692 3.3213 39 1 4.0763 -3.3254 1.3348 40 1 4.2087 -3.4280 3.1074 41 1 5.2920 -1.3628 2.1516 42 1 3.9871 -0.9940 3.3066 43 1 5.8261 -0.1253 2.5227 44 1 8.2839 -0.1478 2.5178 45 1 5.8334 0.2337 -1.7519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316879190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:01 Heat of formation + Delta-G solvation = -23.080786 kcal Electronic energy + Delta-G solvation = -31476.308835 eV Core-core repulsion = 27132.736587 eV Total energy + Delta-G solvation = -4343.572248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.51402 -48.56709 -40.76454 -38.65533 -36.95456 -35.39485 -32.85905 -32.25214 -31.13426 -30.58365 -29.86183 -28.50395 -25.60127 -24.24305 -23.64097 -23.13050 -22.69096 -20.96054 -20.23598 -19.11225 -17.87866 -17.76936 -17.21499 -17.13625 -16.36682 -15.79291 -15.61818 -15.03637 -14.98053 -14.91406 -14.61842 -14.32345 -14.29632 -14.00490 -13.85766 -13.70033 -13.20848 -13.04487 -12.65891 -12.60473 -12.42231 -12.31549 -12.08865 -11.86130 -11.60724 -11.44084 -11.38880 -10.91076 -10.81145 -10.77468 -10.66502 -10.44858 -10.18219 -9.95789 -9.34583 -9.20047 -8.88818 -8.70442 -8.40549 -8.14813 -6.96647 -5.54848 -2.84433 0.55608 0.88216 2.87106 3.09188 3.40823 3.44234 3.51737 3.67138 3.69077 4.22264 4.44611 4.47104 4.69041 4.73715 4.76843 4.89046 4.93279 5.00243 5.13214 5.30862 5.34056 5.45522 5.51308 5.55708 5.65906 5.66982 5.69804 5.75650 5.79113 5.85236 5.94367 5.97963 6.06898 6.12586 6.12959 6.30154 6.35814 6.40551 6.59399 6.61744 6.80363 6.97566 7.25536 7.75133 8.25146 8.61950 8.74352 9.43116 10.15033 10.36023 11.65303 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.005845 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.268525 B = 4789.440784 C = 6485.259215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.172 3.828 3 H 0.094 0.906 4 N -0.734 5.734 5 C -0.183 4.183 6 H 0.089 0.911 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.869 3.131 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.284 1.284 13 C 0.145 3.855 14 H 0.070 0.930 15 C -0.134 4.134 16 C -0.118 4.118 17 C -0.137 4.137 18 C 0.077 3.923 19 N -0.607 5.607 20 C 0.536 3.464 21 O -0.434 6.434 22 C -0.095 4.095 23 C -0.096 4.096 24 C -0.136 4.136 25 C 0.076 3.924 26 F -0.129 7.129 27 C 0.066 3.934 28 F -0.124 7.124 29 C -0.069 4.069 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.354 0.646 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 -3.633 20.361 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.062 3.938 3 H 0.112 0.888 4 N -0.378 5.378 5 C -0.314 4.314 6 H 0.107 0.893 7 C -0.202 4.202 8 N -0.594 5.594 9 Si 0.701 3.299 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.211 1.211 13 C 0.042 3.958 14 H 0.088 0.912 15 C -0.173 4.173 16 C -0.155 4.155 17 C -0.175 4.175 18 C -0.045 4.045 19 N -0.344 5.344 20 C 0.321 3.679 21 O -0.303 6.303 22 C -0.099 4.099 23 C -0.114 4.114 24 C -0.155 4.155 25 C 0.056 3.944 26 F -0.108 7.108 27 C 0.045 3.955 28 F -0.103 7.103 29 C -0.088 4.088 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.188 0.812 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.176 0.824 44 H 0.166 0.834 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.030 -3.054 19.653 20.783 hybrid contribution 0.853 -1.704 -0.322 1.933 sum 6.882 -4.758 19.331 21.064 Atomic orbital electron populations 1.22545 0.99503 1.00915 0.99988 1.20727 0.90545 0.98318 0.84179 0.88844 1.42821 1.79245 1.08530 1.07181 1.18972 1.32841 0.95099 0.84476 0.89306 1.24538 1.03311 0.96314 0.96028 1.69666 1.54842 1.34780 1.00156 0.86779 0.78072 0.88654 0.76412 1.21639 1.22169 1.21068 1.21757 0.78348 0.95775 0.99941 0.91176 1.22081 1.00756 0.95627 0.98810 1.21519 0.95058 1.00370 0.98599 1.21936 0.96675 0.96447 1.02460 1.22569 0.98938 0.91812 0.91198 1.47750 1.06505 1.49005 1.31132 1.18001 0.85736 0.82549 0.81601 1.91095 1.66660 1.38372 1.34166 1.20140 0.95207 1.01664 0.92847 1.21664 0.93191 0.97808 0.98722 1.20957 0.94528 1.03411 0.96596 1.17887 0.77351 1.05589 0.93614 1.91522 1.28103 1.93899 1.97267 1.17569 0.90303 1.06775 0.80810 1.91558 1.79449 1.93687 1.45595 1.21397 0.90882 0.95626 1.00901 0.92326 0.93735 0.94534 0.81201 0.93617 0.91198 0.90644 0.92101 0.92025 0.91485 0.91174 0.87626 0.91474 0.82378 0.83372 0.81709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.10 37.16 0.34 -2.54 16 2 C 0.17 3.22 1.89 -67.93 -0.13 3.10 16 3 H 0.09 1.98 5.88 -52.25 -0.31 1.67 16 4 N -0.73 -16.92 3.32 -53.43 -0.18 -17.09 16 5 C -0.18 -5.15 8.54 -15.06 -0.13 -5.28 16 6 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 7 C -0.01 -0.26 5.50 -17.44 -0.10 -0.36 16 8 N -0.94 -30.39 13.97 55.49 0.78 -29.61 16 9 Si 0.87 22.72 27.74 -169.99 -4.71 18.01 16 10 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 11 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 12 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 13 C 0.15 2.11 2.75 -67.38 -0.19 1.93 16 14 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.13 -1.80 4.84 -26.39 -0.13 -1.93 16 16 C -0.12 -1.21 5.88 -26.69 -0.16 -1.36 16 17 C -0.14 -1.35 6.08 -26.61 -0.16 -1.52 16 18 C 0.08 0.77 4.98 -3.71 -0.02 0.75 16 19 N -0.61 -8.60 2.96 -166.11 -0.49 -9.09 16 20 C 0.54 9.24 6.93 -12.38 -0.09 9.16 16 21 O -0.43 -9.44 9.83 5.31 0.05 -9.39 16 22 C -0.09 -1.41 5.52 -104.97 -0.58 -1.99 16 23 C -0.10 -1.00 7.43 -39.20 -0.29 -1.29 16 24 C -0.14 -1.33 10.01 -39.58 -0.40 -1.73 16 25 C 0.08 0.97 7.31 -39.22 -0.29 0.69 16 26 F -0.13 -1.69 17.17 2.25 0.04 -1.65 16 27 C 0.07 1.00 7.30 -39.43 -0.29 0.72 16 28 F -0.12 -2.08 17.17 2.25 0.04 -2.04 16 29 C -0.07 -1.14 9.58 -39.13 -0.37 -1.52 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.74 6.94 -51.93 -0.36 0.37 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.35 8.21 3.65 -40.82 -0.15 8.06 16 34 H 0.25 7.90 8.31 -40.82 -0.34 7.56 16 35 H 0.07 1.16 6.19 -51.93 -0.32 0.83 16 36 H 0.08 0.95 6.96 -51.93 -0.36 0.59 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.94 3.48 -53.59 -0.19 0.76 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.16 1.18 5.39 -52.49 -0.28 0.90 16 44 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.17 3.24 7.99 -52.49 -0.42 2.82 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -33.62 352.58 -7.92 -41.54 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.78 Total: 7.21 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.97 Total: -3.18 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.11 Total: -55.80 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.05 Total: -9.39 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.62 -7.92 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316879190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.458 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds