Wall clock time and date at job start Tue Mar 31 2020 20:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47229 * 2 1 4 4 N 1.46496 * 109.47552 * 239.99822 * 2 1 3 5 5 C 1.36942 * 120.00278 * 84.99194 * 4 2 1 6 6 H 1.07998 * 119.99324 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00269 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00311 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47130 * 89.99550 * 9 7 5 11 11 H 1.48500 * 109.47106 * 209.99612 * 9 7 5 12 12 H 1.48502 * 109.47325 * 329.99846 * 9 7 5 13 13 C 1.53000 * 109.47081 * 119.99628 * 2 1 3 14 14 H 1.09000 * 109.70040 * 303.16250 * 13 2 1 15 15 C 1.53622 * 109.66246 * 63.75694 * 13 2 1 16 16 C 1.53043 * 109.24129 * 174.55143 * 15 13 2 17 17 C 1.53046 * 109.53640 * 298.50994 * 16 15 13 18 18 C 1.53189 * 109.31543 * 61.36341 * 17 16 15 19 19 N 1.46927 * 109.58451 * 182.80635 * 13 2 1 20 20 C 1.34776 * 120.63157 * 6.62826 * 19 13 2 21 21 O 1.21561 * 120.00009 * 3.52089 * 20 19 13 22 22 C 1.47730 * 119.99894 * 183.51796 * 20 19 13 23 23 C 1.39650 * 120.10974 * 325.44947 * 22 20 19 24 24 C 1.37854 * 119.92819 * 180.02562 * 23 22 20 25 25 C 1.38611 * 120.14247 * 0.02562 * 24 23 22 26 26 F 1.35098 * 119.88457 * 179.97438 * 25 24 23 27 27 C 1.38839 * 120.22091 * 359.67948 * 25 24 23 28 28 F 1.35094 * 119.96441 * 180.32287 * 27 25 24 29 29 C 1.38053 * 120.07045 * 0.60015 * 27 25 24 30 30 H 1.09001 * 109.47244 * 54.93305 * 1 2 3 31 31 H 1.08997 * 109.47116 * 174.92886 * 1 2 3 32 32 H 1.08996 * 109.47021 * 294.93057 * 1 2 3 33 33 H 0.97002 * 119.99992 * 265.00578 * 4 2 1 34 34 H 0.97004 * 120.00638 * 180.02562 * 8 7 5 35 35 H 1.08990 * 109.63889 * 54.55697 * 15 13 2 36 36 H 1.08995 * 109.43102 * 294.41181 * 15 13 2 37 37 H 1.08996 * 109.46169 * 178.48923 * 16 15 13 38 38 H 1.09002 * 109.46148 * 58.52660 * 16 15 13 39 39 H 1.09006 * 109.49585 * 301.41145 * 17 16 15 40 40 H 1.08994 * 109.49861 * 181.32147 * 17 16 15 41 41 H 1.09001 * 109.58928 * 185.57985 * 18 17 16 42 42 H 1.09005 * 109.70399 * 65.22261 * 18 17 16 43 43 H 1.07998 * 120.03789 * 359.97438 * 23 22 20 44 44 H 1.07993 * 119.92857 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.07556 * 179.69927 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8925 1.0403 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.7375 -0.0055 -4.6429 9 14 3.0546 -2.4748 -3.4255 10 1 1.8567 -3.2925 -3.7449 11 1 4.1297 -2.7674 -4.4072 12 1 3.5294 -2.8057 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 1.6332 -0.2439 2.1408 15 6 1.6092 -2.1952 1.2073 16 6 2.2370 -2.9379 2.3890 17 6 3.7624 -2.8789 2.2784 18 6 4.2179 -1.4172 2.3290 19 7 3.5077 -0.6642 1.2862 20 6 4.1893 0.0693 0.3841 21 8 3.5886 0.7426 -0.4305 22 6 5.6665 0.0552 0.3853 23 6 6.3651 -0.0526 1.5897 24 6 7.7436 -0.0649 1.5864 25 6 8.4378 0.0299 0.3904 26 9 9.7887 0.0179 0.3934 27 6 7.7493 0.1311 -0.8110 28 9 8.4310 0.2167 -1.9742 29 6 6.3689 0.1501 -0.8178 30 1 -0.3634 0.5904 -0.8411 31 1 -0.3633 -1.0236 -0.0908 32 1 -0.3633 0.4332 0.9319 33 1 2.2491 -1.6318 -1.1525 34 1 3.0602 -0.4630 -5.4351 35 1 1.9433 -2.6480 0.2740 36 1 0.5231 -2.2575 1.2742 37 1 1.9121 -3.9783 2.3780 38 1 1.9222 -2.4692 3.3213 39 1 4.0763 -3.3254 1.3348 40 1 4.2087 -3.4280 3.1074 41 1 5.2920 -1.3628 2.1516 42 1 3.9871 -0.9940 3.3066 43 1 5.8261 -0.1253 2.5227 44 1 8.2839 -0.1478 2.5178 45 1 5.8334 0.2337 -1.7519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316879190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:00 Heat of formation + Delta-G solvation = -45.130277 kcal Electronic energy + Delta-G solvation = -31477.264973 eV Core-core repulsion = 27132.736587 eV Total energy + Delta-G solvation = -4344.528386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.64240 -49.71975 -41.94452 -39.76836 -38.14961 -36.94934 -34.29036 -33.80316 -32.21648 -31.99377 -31.25799 -29.88989 -26.74321 -25.62624 -25.03579 -24.21077 -24.06955 -22.00191 -21.58500 -20.31905 -19.63130 -18.91963 -18.61055 -18.26171 -17.49469 -17.02079 -16.88812 -16.44769 -16.14449 -16.08244 -15.94507 -15.72567 -15.37697 -15.31206 -15.12269 -14.98525 -14.59388 -14.34336 -14.02751 -13.88768 -13.66776 -13.58373 -13.30081 -13.22409 -13.04308 -12.92108 -12.65047 -12.50738 -12.38531 -12.03064 -11.83515 -11.74946 -11.61806 -11.40768 -11.20288 -10.91826 -10.22656 -9.94110 -9.71577 -9.45536 -8.93904 -7.88690 -5.12937 -0.51702 -0.16528 1.23436 1.28665 1.35127 1.72041 1.98420 2.50497 2.52803 2.62265 3.18054 3.37744 3.42788 3.46568 3.76615 3.79356 3.90384 3.92313 3.99162 4.05862 4.22906 4.35811 4.42703 4.55986 4.62708 4.66020 4.72445 4.76079 4.77207 4.82440 4.85673 4.97040 5.03226 5.03906 5.08496 5.16776 5.27585 5.29387 5.46387 5.52493 5.55524 5.57106 5.88599 5.97971 6.33971 6.59206 7.23016 7.48647 8.01718 8.20280 9.36094 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.005845 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.268525 B = 4789.440784 C = 6485.259215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.065 0.935 4 N -0.729 5.729 5 C -0.142 4.142 6 H 0.044 0.956 7 C -0.085 4.085 8 N -1.000 6.000 9 Si 0.937 3.063 10 H -0.282 1.282 11 H -0.308 1.308 12 H -0.263 1.263 13 C 0.149 3.851 14 H 0.108 0.892 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.136 4.136 18 C 0.069 3.931 19 N -0.603 5.603 20 C 0.529 3.471 21 O -0.503 6.503 22 C -0.110 4.110 23 C -0.068 4.068 24 C -0.104 4.104 25 C 0.081 3.919 26 F -0.128 7.128 27 C 0.041 3.959 28 F -0.144 7.144 29 C -0.097 4.097 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.356 0.644 34 H 0.246 0.754 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.205 0.795 44 H 0.203 0.797 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.009 -5.962 27.065 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.083 0.917 4 N -0.372 5.372 5 C -0.274 4.274 6 H 0.062 0.938 7 C -0.274 4.274 8 N -0.655 5.655 9 Si 0.768 3.232 10 H -0.209 1.209 11 H -0.236 1.236 12 H -0.189 1.189 13 C 0.046 3.954 14 H 0.126 0.874 15 C -0.172 4.172 16 C -0.149 4.149 17 C -0.175 4.175 18 C -0.052 4.052 19 N -0.338 5.338 20 C 0.316 3.684 21 O -0.377 6.377 22 C -0.113 4.113 23 C -0.085 4.085 24 C -0.122 4.122 25 C 0.061 3.939 26 F -0.107 7.107 27 C 0.021 3.979 28 F -0.122 7.122 29 C -0.117 4.117 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.190 0.810 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.222 0.778 44 H 0.220 0.780 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.747 -5.430 26.479 27.859 hybrid contribution 0.618 -0.871 -2.231 2.474 sum 7.365 -6.301 24.247 26.113 Atomic orbital electron populations 1.22390 0.97871 1.01062 1.00672 1.20854 0.91541 0.97343 0.84757 0.91741 1.42762 1.79055 1.08387 1.07026 1.18758 1.29331 0.93117 0.86232 0.93838 1.25197 1.05332 1.00955 0.95874 1.69870 1.57972 1.36692 1.01007 0.85629 0.77403 0.83259 0.76873 1.20927 1.23554 1.18885 1.21715 0.78831 0.96435 0.98408 0.87410 1.22075 1.01677 0.94583 0.98849 1.21515 0.94976 1.00571 0.97866 1.21966 0.96654 0.96407 1.02431 1.23008 0.99110 0.91610 0.91437 1.47904 1.06551 1.48125 1.31177 1.18468 0.86803 0.81908 0.81257 1.91079 1.68129 1.41430 1.37012 1.20057 0.94101 1.03283 0.93886 1.22091 0.93494 0.94744 0.98190 1.21519 0.94081 0.99572 0.97019 1.18063 0.77393 1.05033 0.93458 1.91531 1.28093 1.93831 1.97239 1.17755 0.89921 1.08726 0.81484 1.91495 1.79638 1.94092 1.47013 1.21022 0.91651 0.98906 1.00083 0.95742 0.92989 0.90518 0.80992 0.94456 0.94983 0.89653 0.91301 0.89094 0.94540 0.87433 0.86577 0.86982 0.77807 0.77970 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 9.10 71.98 0.65 -4.70 16 2 C 0.16 6.17 1.89 44.99 0.08 6.25 16 3 H 0.06 2.88 5.88 -7.56 -0.04 2.84 16 4 N -0.73 -34.97 3.32 -322.95 -1.07 -36.04 16 5 C -0.14 -8.59 8.54 84.03 0.72 -7.87 16 6 H 0.04 2.99 8.06 -2.91 -0.02 2.96 16 7 C -0.09 -5.44 5.50 84.86 0.47 -4.98 16 8 N -1.00 -69.57 13.97 21.65 0.30 -69.26 16 9 Si 0.94 50.00 27.74 68.60 1.90 51.91 16 10 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 11 H -0.31 -16.95 7.11 99.48 0.71 -16.24 16 12 H -0.26 -12.86 6.52 99.48 0.65 -12.21 16 13 C 0.15 3.91 2.75 45.12 0.12 4.03 16 14 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.13 -3.13 4.84 30.82 0.15 -2.98 16 16 C -0.11 -1.66 5.88 30.62 0.18 -1.48 16 17 C -0.14 -1.92 6.08 30.67 0.19 -1.74 16 18 C 0.07 0.94 4.98 86.36 0.43 1.37 16 19 N -0.60 -15.31 2.96 -797.72 -2.36 -17.67 16 20 C 0.53 18.28 6.93 86.75 0.60 18.88 16 21 O -0.50 -23.40 9.83 -3.91 -0.04 -23.44 16 22 C -0.11 -3.19 5.52 -20.09 -0.11 -3.30 16 23 C -0.07 -1.09 7.43 22.52 0.17 -0.92 16 24 C -0.10 -1.47 10.01 22.27 0.22 -1.25 16 25 C 0.08 1.89 7.31 22.50 0.16 2.05 16 26 F -0.13 -3.04 17.17 44.97 0.77 -2.27 16 27 C 0.04 1.31 7.30 22.37 0.16 1.48 16 28 F -0.14 -5.21 17.17 44.97 0.77 -4.43 16 29 C -0.10 -3.47 9.58 22.56 0.22 -3.26 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.65 6.94 -2.39 -0.02 1.63 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.36 16.82 3.65 -92.71 -0.34 16.48 16 34 H 0.25 16.58 8.31 -92.71 -0.77 15.81 16 35 H 0.03 1.00 6.19 -2.39 -0.01 0.98 16 36 H 0.08 1.82 6.96 -2.39 -0.02 1.81 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.12 1.31 3.48 -3.94 -0.01 1.30 16 42 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.21 1.47 5.39 -2.91 -0.02 1.45 16 44 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 45 H 0.11 5.15 7.99 -2.91 -0.02 5.13 16 Total: -1.00 -87.09 352.58 5.30 -81.79 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.61 Total: 17.85 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.42 Total: 1.58 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -3.13 Total: -122.98 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.44 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.54 Total: -6.71 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.90 Total: 51.91 kcal Total: -87.09 5.30 -81.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316879190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.660 kcal (2) G-P(sol) polarization free energy of solvation -87.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds