Wall clock time and date at job start Tue Mar 31 2020 21:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 C 1.53000 * 109.46848 * 239.99861 * 2 1 3 5 5 N 1.46499 * 109.47100 * 65.00302 * 4 2 1 6 6 C 1.36939 * 119.99547 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00716 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99459 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00154 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99635 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99668 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99848 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99841 * 10 8 6 14 14 C 1.52994 * 109.46924 * 119.99789 * 2 1 3 15 15 N 1.46495 * 109.47322 * 295.00141 * 14 2 1 16 16 C 1.34782 * 120.00385 * 180.02562 * 15 14 2 17 17 O 1.21288 * 119.99316 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00414 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.54599 * 34.32837 * 18 16 15 20 20 C 1.52998 * 117.49790 * 248.62339 * 18 16 15 21 21 C 1.52998 * 117.50031 * 179.97438 * 18 16 15 22 22 H 1.09007 * 117.49937 * 359.97438 * 21 18 16 23 23 C 1.50697 * 117.49965 * 214.98146 * 21 18 16 24 24 C 1.38256 * 120.00045 * 299.99579 * 23 21 18 25 25 C 1.38217 * 120.07247 * 180.02562 * 24 23 21 26 26 C 1.38250 * 120.06933 * 359.97438 * 25 24 23 27 27 C 1.38372 * 120.00293 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.03715 * 180.02562 * 27 26 25 29 29 C 1.38373 * 120.00359 * 119.72914 * 23 21 18 30 30 F 1.35099 * 120.02930 * 359.97138 * 29 23 21 31 31 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46956 * 300.00253 * 1 2 3 33 33 H 1.09006 * 109.47079 * 59.99997 * 1 2 3 34 34 H 1.08994 * 109.47445 * 304.99973 * 4 2 1 35 35 H 1.08999 * 109.46641 * 185.00103 * 4 2 1 36 36 H 0.96998 * 120.00185 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00007 * 0.02562 * 9 8 6 38 38 H 1.08999 * 109.47556 * 55.00127 * 14 2 1 39 39 H 1.09001 * 109.47096 * 175.00133 * 14 2 1 40 40 H 0.96997 * 120.00394 * 359.97438 * 15 14 2 41 41 H 1.08996 * 117.50348 * 359.97438 * 20 18 16 42 42 H 1.09006 * 117.49930 * 145.02437 * 20 18 16 43 43 H 1.08004 * 119.96524 * 0.02562 * 24 23 21 44 44 H 1.08000 * 119.96486 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.99984 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4204 -3.6855 7 1 2.5636 -1.3373 -3.7864 8 6 1.6343 0.2963 -4.8161 9 7 0.9494 1.4135 -4.6932 10 14 2.1117 -0.3250 -6.5118 11 1 3.4337 0.2357 -6.8904 12 1 1.0907 0.1034 -7.5015 13 1 2.1902 -1.8077 -6.4918 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0354 2.4423 16 6 1.9964 -0.4130 3.6659 17 8 2.6264 -1.4432 3.7792 18 6 1.5982 0.3656 4.8932 19 1 0.6369 0.8760 4.8347 20 6 2.7126 1.0463 5.6903 21 6 2.0180 -0.1959 6.2531 22 1 2.5819 -1.1288 6.2601 23 6 1.0712 -0.0001 7.4091 24 6 0.7201 1.2767 7.8064 25 6 -0.1477 1.4581 8.8668 26 6 -0.6669 0.3630 9.5320 27 6 -0.3184 -0.9163 9.1362 28 9 -0.8257 -1.9869 9.7854 29 6 0.5489 -1.0982 8.0694 30 9 0.8869 -2.3463 7.6778 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7198 -1.2952 35 1 3.1263 -0.7995 -1.2055 36 1 1.1483 0.8590 -2.3518 37 1 0.7018 1.7362 -3.8127 38 1 1.6054 -1.7197 1.2952 39 1 3.1263 -0.7994 1.2056 40 1 1.1489 0.8595 2.3517 41 1 3.7339 0.9307 5.3274 42 1 2.4846 2.0049 6.1565 43 1 1.1244 2.1334 7.2877 44 1 -0.4211 2.4563 9.1755 45 1 -1.3446 0.5060 10.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319283507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:12 Heat of formation + Delta-G solvation = -73.594463 kcal Electronic energy + Delta-G solvation = -27678.700980 eV Core-core repulsion = 23332.938295 eV Total energy + Delta-G solvation = -4345.762686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85732 -48.92983 -40.58793 -39.43415 -37.36485 -36.43088 -34.59296 -32.69898 -31.30519 -30.81186 -29.88921 -27.02763 -25.56935 -24.85877 -23.91216 -23.16827 -22.44028 -21.30805 -20.56419 -19.78609 -18.52440 -18.01161 -17.43015 -17.36027 -16.94482 -16.71201 -16.19211 -15.76220 -15.44844 -15.32906 -15.01292 -14.89426 -14.68594 -14.47527 -14.15004 -13.73669 -13.54912 -13.22877 -13.07460 -12.93457 -12.82835 -12.75514 -12.39679 -12.25845 -12.16610 -11.71636 -11.31604 -11.07257 -10.99882 -10.85513 -10.66832 -10.63645 -10.39196 -10.05865 -9.98895 -9.31601 -9.23542 -9.18284 -9.12796 -8.89286 -7.01687 -6.12101 -3.11523 0.35663 0.39842 2.26964 2.72040 2.97390 3.23333 3.50040 3.51695 3.56452 3.70404 3.84700 3.93017 4.08089 4.24900 4.29556 4.37071 4.54140 4.62127 4.65283 4.74355 4.94354 5.09990 5.13188 5.20946 5.26223 5.26642 5.37377 5.41448 5.48242 5.60146 5.61574 5.69908 5.80334 5.83246 5.88595 5.91413 6.11364 6.19808 6.25790 6.37822 6.50160 6.65641 6.75742 7.37448 7.80827 8.08268 8.74494 9.21427 10.07714 10.22493 11.36624 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.001640 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.648882 B =17068.961058 C =17225.687663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.075 0.925 4 C 0.166 3.834 5 N -0.742 5.742 6 C -0.331 4.331 7 H 0.065 0.935 8 C -0.046 4.046 9 N -0.945 5.945 10 Si 1.083 2.917 11 H -0.295 1.295 12 H -0.288 1.288 13 H -0.295 1.295 14 C 0.127 3.873 15 N -0.719 5.719 16 C 0.539 3.461 17 O -0.539 6.539 18 C -0.172 4.172 19 H 0.128 0.872 20 C -0.136 4.136 21 C -0.092 4.092 22 H 0.134 0.866 23 C -0.058 4.058 24 C -0.103 4.103 25 C -0.096 4.096 26 C -0.130 4.130 27 C 0.069 3.931 28 F -0.128 7.128 29 C 0.077 3.923 30 F -0.121 7.121 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.367 0.633 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 3.220 32.276 32.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.038 3.962 5 N -0.388 5.388 6 C -0.462 4.462 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.591 5.591 10 Si 0.914 3.086 11 H -0.223 1.223 12 H -0.214 1.214 13 H -0.221 1.221 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.324 3.676 17 O -0.416 6.416 18 C -0.193 4.193 19 H 0.146 0.854 20 C -0.173 4.173 21 C -0.110 4.110 22 H 0.152 0.848 23 C -0.059 4.059 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.149 4.149 27 C 0.049 3.951 28 F -0.106 7.106 29 C 0.057 3.943 30 F -0.100 7.100 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.200 0.800 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.867 2.451 30.668 30.822 hybrid contribution -0.432 -0.203 1.674 1.741 sum -2.298 2.247 32.342 32.501 Atomic orbital electron populations 1.21791 0.94669 1.02072 1.01320 1.21569 0.96677 1.00445 0.94342 0.90622 1.20511 0.96686 0.94142 0.84900 1.42343 1.67571 1.27362 1.01519 1.20079 1.33033 1.08051 0.85032 0.91681 1.25790 0.99492 0.96662 1.02418 1.70859 1.40999 1.22138 1.25079 0.83184 0.75915 0.74367 0.75105 1.22306 1.21378 1.22140 1.21422 1.00217 0.95303 0.82739 1.45961 1.57571 1.27782 1.05687 1.19513 0.79275 0.85022 0.83758 1.90727 1.40069 1.24201 1.86570 1.22386 1.01782 1.04418 0.90706 0.85386 1.23185 0.97378 0.96241 1.00532 1.20940 0.99926 1.00723 0.89425 0.84822 1.19081 0.98123 0.91911 0.96759 1.21083 0.97677 0.96106 0.97245 1.21077 0.96263 0.99048 0.95028 1.21134 1.01885 0.89939 1.01939 1.17695 0.98466 0.84865 0.94049 1.91546 1.85363 1.54003 1.79707 1.17492 0.99658 0.80674 0.96467 1.91564 1.90667 1.37781 1.89960 0.92665 0.93732 0.91552 0.95880 0.96020 0.79963 0.93487 0.91224 0.91244 0.76405 0.87143 0.87019 0.83938 0.83958 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 37.16 0.33 -1.69 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.17 3.31 5.65 -4.04 -0.02 3.29 16 5 N -0.74 -18.54 5.33 -59.91 -0.32 -18.86 16 6 C -0.33 -9.42 9.99 -15.06 -0.15 -9.57 16 7 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 8 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 9 N -0.94 -29.12 13.70 55.49 0.76 -28.36 16 10 Si 1.08 26.09 29.92 -169.99 -5.09 21.00 16 11 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.13 1.72 5.06 -4.05 -0.02 1.70 16 15 N -0.72 -7.99 5.28 -60.30 -0.32 -8.31 16 16 C 0.54 6.51 7.61 -10.99 -0.08 6.43 16 17 O -0.54 -8.76 16.26 5.55 0.09 -8.67 16 18 C -0.17 -1.41 5.82 -91.78 -0.53 -1.94 16 19 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.14 -0.85 9.56 -26.71 -0.26 -1.11 16 21 C -0.09 -0.78 5.31 -91.75 -0.49 -1.27 16 22 H 0.13 1.45 7.40 -51.92 -0.38 1.07 16 23 C -0.06 -0.45 5.62 -104.57 -0.59 -1.03 16 24 C -0.10 -0.51 9.30 -39.58 -0.37 -0.88 16 25 C -0.10 -0.39 10.04 -39.58 -0.40 -0.79 16 26 C -0.13 -0.71 10.02 -39.53 -0.40 -1.11 16 27 C 0.07 0.59 7.31 -39.37 -0.29 0.30 16 28 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 29 C 0.08 0.74 7.25 -39.37 -0.29 0.46 16 30 F -0.12 -1.46 16.53 2.25 0.04 -1.42 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 33 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.37 9.22 5.68 -40.82 -0.23 8.99 16 37 H 0.25 7.65 6.77 -40.82 -0.28 7.38 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 3.46 7.66 -40.82 -0.31 3.15 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.38 6.18 -51.93 -0.32 0.06 16 43 H 0.14 0.37 6.02 -52.48 -0.32 0.05 16 44 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 45 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -35.28 384.11 -8.89 -44.17 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.02 Total: 6.45 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.86 Total: -10.56 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.12 Total: -55.53 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.09 Total: 21.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.28 -8.89 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319283507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.426 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds