Wall clock time and date at job start Tue Mar 31 2020 21:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46933 * 2 1 4 4 C 1.53000 * 109.46848 * 239.99861 * 2 1 3 5 5 N 1.46499 * 109.47100 * 65.00302 * 4 2 1 6 6 C 1.36939 * 119.99547 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00716 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99459 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00154 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99635 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99668 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99848 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99841 * 10 8 6 14 14 C 1.52994 * 109.46924 * 119.99789 * 2 1 3 15 15 N 1.46495 * 109.47322 * 295.00141 * 14 2 1 16 16 C 1.34782 * 120.00385 * 180.02562 * 15 14 2 17 17 O 1.21288 * 119.99316 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00414 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.54599 * 34.32837 * 18 16 15 20 20 C 1.52998 * 117.49790 * 248.62339 * 18 16 15 21 21 C 1.52998 * 117.50031 * 179.97438 * 18 16 15 22 22 H 1.09007 * 117.49937 * 359.97438 * 21 18 16 23 23 C 1.50697 * 117.49965 * 214.98146 * 21 18 16 24 24 C 1.38256 * 120.00045 * 299.99579 * 23 21 18 25 25 C 1.38217 * 120.07247 * 180.02562 * 24 23 21 26 26 C 1.38250 * 120.06933 * 359.97438 * 25 24 23 27 27 C 1.38372 * 120.00293 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.03715 * 180.02562 * 27 26 25 29 29 C 1.38373 * 120.00359 * 119.72914 * 23 21 18 30 30 F 1.35099 * 120.02930 * 359.97138 * 29 23 21 31 31 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46956 * 300.00253 * 1 2 3 33 33 H 1.09006 * 109.47079 * 59.99997 * 1 2 3 34 34 H 1.08994 * 109.47445 * 304.99973 * 4 2 1 35 35 H 1.08999 * 109.46641 * 185.00103 * 4 2 1 36 36 H 0.96998 * 120.00185 * 359.97438 * 5 4 2 37 37 H 0.96993 * 120.00007 * 0.02562 * 9 8 6 38 38 H 1.08999 * 109.47556 * 55.00127 * 14 2 1 39 39 H 1.09001 * 109.47096 * 175.00133 * 14 2 1 40 40 H 0.96997 * 120.00394 * 359.97438 * 15 14 2 41 41 H 1.08996 * 117.50348 * 359.97438 * 20 18 16 42 42 H 1.09006 * 117.49930 * 145.02437 * 20 18 16 43 43 H 1.08004 * 119.96524 * 0.02562 * 24 23 21 44 44 H 1.08000 * 119.96486 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.99984 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0020 -0.4204 -3.6855 7 1 2.5636 -1.3373 -3.7864 8 6 1.6343 0.2963 -4.8161 9 7 0.9494 1.4135 -4.6932 10 14 2.1117 -0.3250 -6.5118 11 1 3.4337 0.2357 -6.8904 12 1 1.0907 0.1034 -7.5015 13 1 2.1902 -1.8077 -6.4918 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0354 2.4423 16 6 1.9964 -0.4130 3.6659 17 8 2.6264 -1.4432 3.7792 18 6 1.5982 0.3656 4.8932 19 1 0.6369 0.8760 4.8347 20 6 2.7126 1.0463 5.6903 21 6 2.0180 -0.1959 6.2531 22 1 2.5819 -1.1288 6.2601 23 6 1.0712 -0.0001 7.4091 24 6 0.7201 1.2767 7.8064 25 6 -0.1477 1.4581 8.8668 26 6 -0.6669 0.3630 9.5320 27 6 -0.3184 -0.9163 9.1362 28 9 -0.8257 -1.9869 9.7854 29 6 0.5489 -1.0982 8.0694 30 9 0.8869 -2.3463 7.6778 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -1.7198 -1.2952 35 1 3.1263 -0.7995 -1.2055 36 1 1.1483 0.8590 -2.3518 37 1 0.7018 1.7362 -3.8127 38 1 1.6054 -1.7197 1.2952 39 1 3.1263 -0.7994 1.2056 40 1 1.1489 0.8595 2.3517 41 1 3.7339 0.9307 5.3274 42 1 2.4846 2.0049 6.1565 43 1 1.1244 2.1334 7.2877 44 1 -0.4211 2.4563 9.1755 45 1 -1.3446 0.5060 10.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319283507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:11 Heat of formation + Delta-G solvation = -95.972987 kcal Electronic energy + Delta-G solvation = -27679.671386 eV Core-core repulsion = 23332.938295 eV Total energy + Delta-G solvation = -4346.733091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.54932 -49.64292 -41.37113 -40.11750 -38.54787 -37.33687 -36.21336 -34.24593 -31.94489 -31.60701 -31.26610 -28.12989 -27.13252 -25.59091 -25.10790 -24.09700 -23.59084 -21.92030 -21.66810 -20.90884 -19.45373 -19.12049 -18.66417 -18.01863 -17.73620 -17.43625 -17.28501 -16.70837 -16.54121 -16.14844 -16.07770 -15.89758 -15.65118 -15.58165 -15.37891 -15.16994 -14.81622 -14.31083 -14.12761 -13.76585 -13.71167 -13.56356 -13.42511 -13.30421 -12.83462 -12.67739 -12.64771 -12.24383 -12.19998 -12.13055 -11.88825 -11.82400 -11.80106 -11.64220 -11.31239 -11.00250 -10.95763 -10.18737 -9.79669 -9.77014 -9.12760 -8.42022 -5.35631 -0.10714 -0.08934 1.40410 1.58198 1.68512 1.83112 2.00386 2.31890 2.68899 2.70750 2.90281 3.24306 3.37534 3.42071 3.52489 3.58242 3.71362 3.74687 3.84709 3.90372 3.95222 4.02905 4.12474 4.16119 4.19669 4.42866 4.59318 4.64471 4.71193 4.76365 4.81030 4.82179 4.92411 4.93786 4.97145 5.00099 5.02766 5.21198 5.23064 5.29222 5.31000 5.38942 5.56891 5.75236 6.48259 6.49265 7.07906 7.17010 7.98159 8.08742 9.10366 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.001640 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.648882 B =17068.961058 C =17225.687663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.083 0.917 4 C 0.161 3.839 5 N -0.752 5.752 6 C -0.339 4.339 7 H 0.063 0.937 8 C -0.102 4.102 9 N -0.972 5.972 10 Si 1.130 2.870 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.276 1.276 14 C 0.138 3.862 15 N -0.707 5.707 16 C 0.533 3.467 17 O -0.589 6.589 18 C -0.173 4.173 19 H 0.160 0.840 20 C -0.108 4.108 21 C -0.108 4.108 22 H 0.096 0.904 23 C -0.063 4.063 24 C -0.092 4.092 25 C -0.080 4.080 26 C -0.125 4.125 27 C 0.044 3.956 28 F -0.146 7.146 29 C 0.037 3.963 30 F -0.150 7.150 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.364 0.636 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.417 0.583 41 H 0.101 0.899 42 H 0.154 0.846 43 H 0.178 0.822 44 H 0.184 0.816 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 6.193 33.674 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.101 0.899 4 C 0.034 3.966 5 N -0.397 5.397 6 C -0.470 4.470 7 H 0.081 0.919 8 C -0.293 4.293 9 N -0.620 5.620 10 Si 0.955 3.045 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.202 1.202 14 C 0.013 3.987 15 N -0.358 5.358 16 C 0.321 3.679 17 O -0.470 6.470 18 C -0.193 4.193 19 H 0.178 0.822 20 C -0.145 4.145 21 C -0.127 4.127 22 H 0.114 0.886 23 C -0.064 4.064 24 C -0.109 4.109 25 C -0.097 4.097 26 C -0.143 4.143 27 C 0.024 3.976 28 F -0.124 7.124 29 C 0.017 3.983 30 F -0.129 7.129 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.197 0.803 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.120 0.880 42 H 0.172 0.828 43 H 0.195 0.805 44 H 0.202 0.798 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.406 5.435 32.107 32.652 hybrid contribution -0.244 -1.131 1.324 1.759 sum -2.650 4.304 33.431 33.811 Atomic orbital electron populations 1.21741 0.93778 1.01875 1.01926 1.21328 0.97183 1.00129 0.92508 0.89869 1.20657 0.96432 0.93974 0.85542 1.42490 1.67525 1.27659 1.02041 1.20415 1.32202 1.07785 0.86621 0.91924 1.27201 0.99450 0.96511 1.06181 1.70961 1.42867 1.23487 1.24697 0.82585 0.75881 0.74995 0.71052 1.21026 1.21694 1.20178 1.21098 0.99479 0.94941 0.83150 1.45789 1.57343 1.28000 1.04709 1.20249 0.78169 0.84589 0.84878 1.90712 1.42389 1.26602 1.87298 1.22427 1.03973 1.04588 0.88345 0.82219 1.23377 0.96262 0.96731 0.98128 1.20779 1.00934 1.00666 0.90274 0.88603 1.19127 0.98164 0.92608 0.96468 1.21499 0.96850 0.95484 0.97092 1.21588 0.94371 1.00231 0.93523 1.21519 1.01621 0.88836 1.02321 1.18088 0.99352 0.85724 0.94463 1.91489 1.85713 1.55166 1.80070 1.18003 1.01722 0.80342 0.98268 1.91477 1.91219 1.39724 1.90468 0.93296 0.90007 0.93961 0.96526 0.96433 0.80269 0.94394 0.92331 0.92214 0.74489 0.88015 0.82794 0.80457 0.79829 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.94 71.98 0.64 -3.09 16 2 C -0.09 -2.71 2.46 -10.79 -0.03 -2.73 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.16 6.49 5.65 86.38 0.49 6.97 16 5 N -0.75 -37.94 5.33 -343.46 -1.83 -39.77 16 6 C -0.34 -19.38 9.99 84.03 0.84 -18.54 16 7 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 8 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 9 N -0.97 -60.34 13.70 21.65 0.30 -60.05 16 10 Si 1.13 52.27 29.92 68.60 2.05 54.33 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 C 0.14 3.68 5.06 86.38 0.44 4.12 16 15 N -0.71 -14.57 5.28 -463.07 -2.45 -17.01 16 16 C 0.53 12.54 7.61 87.65 0.67 13.21 16 17 O -0.59 -19.91 16.26 -3.05 -0.05 -19.96 16 18 C -0.17 -2.45 5.82 -11.54 -0.07 -2.51 16 19 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 20 C -0.11 -1.02 9.56 30.61 0.29 -0.73 16 21 C -0.11 -1.78 5.31 -11.52 -0.06 -1.84 16 22 H 0.10 2.32 7.40 -2.38 -0.02 2.30 16 23 C -0.06 -0.89 5.62 -19.83 -0.11 -1.00 16 24 C -0.09 -0.50 9.30 22.27 0.21 -0.29 16 25 C -0.08 -0.27 10.04 22.27 0.22 -0.04 16 26 C -0.12 -1.04 10.02 22.30 0.22 -0.81 16 27 C 0.04 0.75 7.31 22.41 0.16 0.91 16 28 F -0.15 -3.09 17.18 44.97 0.77 -2.31 16 29 C 0.04 0.74 7.25 22.41 0.16 0.90 16 30 F -0.15 -4.07 16.53 44.97 0.74 -3.33 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.63 7.18 -2.38 -0.02 1.61 16 33 H 0.04 1.38 7.18 -2.38 -0.02 1.36 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.36 18.57 5.68 -92.71 -0.53 18.04 16 37 H 0.25 15.05 6.77 -92.71 -0.63 14.42 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.42 5.89 7.66 -92.71 -0.71 5.18 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.15 0.13 6.18 -2.38 -0.01 0.12 16 43 H 0.18 -0.31 6.02 -2.91 -0.02 -0.32 16 44 H 0.18 -0.81 8.06 -2.91 -0.02 -0.83 16 45 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -81.95 384.11 4.04 -77.92 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.05 Total: 21.16 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.55 Total: -10.97 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -3.98 Total: -116.83 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 1.52 Total: -5.65 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.05 Total: 54.33 kcal Total: -81.95 4.04 -77.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319283507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.055 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds