Wall clock time and date at job start Tue Mar 31 2020 21:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46875 * 2 1 4 4 C 1.52998 * 109.47181 * 239.99683 * 2 1 3 5 5 N 1.46496 * 109.46834 * 184.99762 * 4 2 1 6 6 C 1.36949 * 119.99928 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99463 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99860 * 180.02562 * 6 5 4 9 9 N 1.31611 * 120.00472 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46944 * 120.00139 * 10 8 6 13 13 H 1.48499 * 109.46980 * 240.00174 * 10 8 6 14 14 N 1.46502 * 109.47127 * 119.99777 * 2 1 3 15 15 C 1.46496 * 120.00017 * 60.00201 * 14 2 1 16 16 C 1.34781 * 120.00017 * 240.00158 * 14 2 1 17 17 O 1.21278 * 119.99857 * 0.02562 * 16 14 2 18 18 C 1.50693 * 120.00110 * 180.02562 * 16 14 2 19 19 H 1.08995 * 115.55047 * 34.41462 * 18 16 14 20 20 C 1.52999 * 117.49816 * 248.74924 * 18 16 14 21 21 C 1.53001 * 60.00074 * 252.48442 * 20 18 16 22 22 H 1.09003 * 117.49839 * 107.48777 * 21 20 18 23 23 C 1.50693 * 117.50133 * 252.51072 * 21 20 18 24 24 C 1.38424 * 120.02518 * 17.62936 * 23 21 20 25 25 F 1.35099 * 120.00908 * 359.97438 * 24 23 21 26 26 C 1.38469 * 119.97511 * 179.74511 * 24 23 21 27 27 C 1.38212 * 120.02670 * 0.50902 * 26 24 23 28 28 C 1.38206 * 120.04833 * 359.76730 * 27 26 24 29 29 C 1.38417 * 120.03074 * 197.90337 * 23 21 20 30 30 F 1.35104 * 120.00654 * 359.97438 * 29 23 21 31 31 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47532 * 299.99761 * 1 2 3 33 33 H 1.08994 * 109.47439 * 60.00467 * 1 2 3 34 34 H 1.08993 * 109.47423 * 304.99943 * 4 2 1 35 35 H 1.08997 * 109.46592 * 65.00177 * 4 2 1 36 36 H 0.96999 * 120.00540 * 0.02562 * 5 4 2 37 37 H 0.97004 * 120.00070 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.47191 * 269.99808 * 15 14 2 39 39 H 1.08992 * 109.47287 * 29.99810 * 15 14 2 40 40 H 1.08997 * 109.47078 * 150.00287 * 15 14 2 41 41 H 1.09008 * 117.50089 * 359.97185 * 20 18 16 42 42 H 1.08997 * 117.50528 * 144.97290 * 20 18 16 43 43 H 1.08007 * 119.98910 * 180.23233 * 26 24 23 44 44 H 1.08002 * 119.97791 * 179.75011 * 27 26 24 45 45 H 1.07997 * 119.98669 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1839 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5673 -1.5379 -2.1512 9 7 6.2216 -1.0454 -1.1210 10 14 6.5001 -2.3729 -3.5377 11 1 5.5398 -2.8384 -4.5704 12 1 7.4511 -1.4080 -4.1458 13 1 7.2509 -3.5354 -2.9993 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.7932 -0.0355 2.0834 17 8 3.0857 1.1257 1.8917 18 6 3.2960 -0.7460 3.3135 19 1 3.5243 -1.8040 3.1850 20 6 2.7307 -0.3044 4.6650 21 6 4.1689 0.0524 4.2839 22 1 4.3798 1.0918 4.0325 23 6 5.2787 -0.6841 4.9887 24 6 5.0111 -1.8686 5.6532 25 9 3.7546 -2.3646 5.6706 26 6 6.0326 -2.5473 6.2960 27 6 7.3171 -2.0371 6.2832 28 6 7.5843 -0.8516 5.6249 29 6 6.5654 -0.1740 4.9769 30 9 6.8270 0.9846 4.3330 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1584 -2.1369 36 1 3.9823 -0.4627 -0.4315 37 1 7.1884 -1.1150 -1.0821 38 1 0.7376 -2.1443 1.9994 39 1 1.5295 -2.5968 0.4710 40 1 2.4629 -2.5817 1.9865 41 1 1.9954 0.5003 4.6644 42 1 2.5869 -1.0719 5.4255 43 1 5.8248 -3.4734 6.8114 44 1 8.1125 -2.5650 6.7883 45 1 8.5883 -0.4537 5.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319528358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:52 Heat of formation + Delta-G solvation = -45.909942 kcal Electronic energy + Delta-G solvation = -30038.167178 eV Core-core repulsion = 25693.604983 eV Total energy + Delta-G solvation = -4344.562195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.39455 -48.93957 -40.03094 -38.97226 -37.06101 -35.73705 -33.92401 -31.89498 -30.85895 -30.45113 -30.00250 -26.56586 -25.65905 -24.81304 -23.76569 -22.93757 -22.48597 -21.39002 -20.24331 -18.56734 -18.25758 -17.73697 -17.02487 -16.88227 -16.21905 -16.02781 -15.75135 -15.64139 -15.36097 -15.09371 -14.69124 -14.64229 -14.10493 -13.90693 -13.57542 -13.26574 -13.14027 -12.84236 -12.63778 -12.41208 -12.32880 -12.24490 -12.18868 -12.01642 -11.98521 -11.71799 -11.41355 -11.05325 -10.83728 -10.75864 -10.73505 -10.46250 -10.40179 -9.98515 -9.66141 -9.35591 -8.91297 -8.83804 -8.75887 -8.18908 -6.85283 -5.68618 -2.98380 0.76358 0.81863 2.83632 3.16347 3.34870 3.45632 3.50759 3.53431 3.73212 3.98552 4.23630 4.29482 4.48816 4.56784 4.62881 4.83647 4.85645 4.94485 5.09888 5.23081 5.33551 5.45771 5.50174 5.55286 5.60951 5.64164 5.67058 5.73666 5.77098 5.79496 5.85366 5.94240 5.96360 6.00995 6.13771 6.15943 6.23390 6.24397 6.42146 6.55626 6.59424 6.77103 7.05414 7.74213 7.80784 8.48301 8.62462 9.59825 10.19124 10.54471 11.53220 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.004187 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.876534 B = 6685.249261 C = 8513.484335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.926 5.926 10 Si 0.904 3.096 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.591 5.591 15 C 0.084 3.916 16 C 0.549 3.451 17 O -0.539 6.539 18 C -0.162 4.162 19 H 0.126 0.874 20 C -0.159 4.159 21 C -0.091 4.091 22 H 0.134 0.866 23 C -0.115 4.115 24 C 0.126 3.874 25 F -0.124 7.124 26 C -0.162 4.162 27 C -0.068 4.068 28 C -0.160 4.160 29 C 0.143 3.857 30 F -0.121 7.121 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.387 0.613 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -3.143 18.750 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.575 5.575 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.324 5.324 15 C -0.060 4.060 16 C 0.337 3.663 17 O -0.416 6.416 18 C -0.183 4.183 19 H 0.144 0.856 20 C -0.196 4.196 21 C -0.110 4.110 22 H 0.152 0.848 23 C -0.117 4.117 24 C 0.107 3.893 25 F -0.102 7.102 26 C -0.181 4.181 27 C -0.086 4.086 28 C -0.179 4.179 29 C 0.123 3.877 30 F -0.100 7.100 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.221 0.779 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.520 -2.586 18.439 19.420 hybrid contribution 0.699 -0.442 -0.872 1.202 sum -4.820 -3.029 17.567 18.466 Atomic orbital electron populations 1.22041 0.95166 1.02032 1.01956 1.21394 0.93242 0.98534 0.84634 0.88254 1.20998 0.87157 0.96713 0.93635 1.42323 0.99681 1.70128 1.25145 1.19248 0.89443 1.29405 0.99114 0.91267 1.24748 0.96451 1.01695 0.97988 1.69707 1.07017 1.50725 1.30030 0.86159 0.79986 0.78750 0.81542 1.20613 1.21896 1.21975 1.47531 1.50415 1.12220 1.22190 1.21704 0.99821 0.81968 1.02481 1.19374 0.77542 0.86238 0.83145 1.90678 1.57344 1.17138 1.76442 1.22298 1.05090 1.00598 0.90336 0.85628 1.23690 0.95078 1.04287 0.96577 1.20820 0.89156 1.00366 1.00640 0.84811 1.19196 0.94321 0.96046 1.02115 1.17165 0.79865 0.92783 0.99499 1.91333 1.37352 1.86735 1.94823 1.21161 0.92463 1.01753 1.02759 1.20820 0.96132 0.94461 0.97222 1.21242 0.99451 0.96898 1.00345 1.17175 0.92285 0.83800 0.94407 1.91578 1.94287 1.45228 1.78876 0.92406 0.92714 0.91464 0.96207 0.95460 0.77907 0.93656 0.93269 0.90487 0.91324 0.88088 0.85253 0.84008 0.83941 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.19 37.16 0.34 -1.71 16 2 C 0.13 2.24 2.80 -67.93 -0.19 2.05 16 3 H 0.10 2.04 6.90 -51.93 -0.36 1.68 16 4 C 0.14 3.00 5.50 -4.04 -0.02 2.97 16 5 N -0.73 -19.43 5.43 -59.91 -0.33 -19.76 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.01 -0.37 5.50 -17.44 -0.10 -0.47 16 9 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 10 Si 0.90 23.02 29.55 -169.99 -5.02 17.99 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 14 N -0.59 -10.37 2.24 -173.95 -0.39 -10.76 16 15 C 0.08 1.19 9.32 59.84 0.56 1.75 16 16 C 0.55 10.55 7.16 -10.99 -0.08 10.47 16 17 O -0.54 -12.26 15.59 5.56 0.09 -12.18 16 18 C -0.16 -2.58 4.55 -91.77 -0.42 -3.00 16 19 H 0.13 1.94 6.18 -51.93 -0.32 1.62 16 20 C -0.16 -2.03 9.37 -26.73 -0.25 -2.28 16 21 C -0.09 -1.40 5.39 -91.77 -0.49 -1.89 16 22 H 0.13 2.30 7.22 -51.93 -0.38 1.92 16 23 C -0.11 -1.60 5.65 -104.49 -0.59 -2.19 16 24 C 0.13 1.49 7.04 -39.43 -0.28 1.21 16 25 F -0.12 -1.41 12.91 2.25 0.03 -1.38 16 26 C -0.16 -1.51 10.02 -39.51 -0.40 -1.91 16 27 C -0.07 -0.58 10.04 -39.60 -0.40 -0.98 16 28 C -0.16 -1.69 10.02 -39.51 -0.40 -2.09 16 29 C 0.14 1.98 7.25 -39.43 -0.29 1.69 16 30 F -0.12 -1.95 16.51 2.25 0.04 -1.92 16 31 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.02 0.40 6.88 -51.93 -0.36 0.05 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.39 11.26 7.06 -40.82 -0.29 10.97 16 37 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.14 6.53 -51.93 -0.34 0.81 16 40 H 0.07 0.96 6.00 -51.93 -0.31 0.65 16 41 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.13 1.43 5.13 -51.93 -0.27 1.16 16 43 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -35.19 376.03 -8.28 -43.47 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.94 Total: 10.90 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.14 Total: -3.48 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.01 Total: -59.08 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.07 Total: -3.30 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.19 -8.28 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319528358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.436 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds