Wall clock time and date at job start Tue Mar 31 2020 21:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46875 * 2 1 4 4 C 1.52998 * 109.47181 * 239.99683 * 2 1 3 5 5 N 1.46496 * 109.46834 * 184.99762 * 4 2 1 6 6 C 1.36949 * 119.99928 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99463 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99860 * 180.02562 * 6 5 4 9 9 N 1.31611 * 120.00472 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46944 * 120.00139 * 10 8 6 13 13 H 1.48499 * 109.46980 * 240.00174 * 10 8 6 14 14 N 1.46502 * 109.47127 * 119.99777 * 2 1 3 15 15 C 1.46496 * 120.00017 * 60.00201 * 14 2 1 16 16 C 1.34781 * 120.00017 * 240.00158 * 14 2 1 17 17 O 1.21278 * 119.99857 * 0.02562 * 16 14 2 18 18 C 1.50693 * 120.00110 * 180.02562 * 16 14 2 19 19 H 1.08995 * 115.55047 * 34.41462 * 18 16 14 20 20 C 1.52999 * 117.49816 * 248.74924 * 18 16 14 21 21 C 1.53001 * 60.00074 * 252.48442 * 20 18 16 22 22 H 1.09003 * 117.49839 * 107.48777 * 21 20 18 23 23 C 1.50693 * 117.50133 * 252.51072 * 21 20 18 24 24 C 1.38424 * 120.02518 * 17.62936 * 23 21 20 25 25 F 1.35099 * 120.00908 * 359.97438 * 24 23 21 26 26 C 1.38469 * 119.97511 * 179.74511 * 24 23 21 27 27 C 1.38212 * 120.02670 * 0.50902 * 26 24 23 28 28 C 1.38206 * 120.04833 * 359.76730 * 27 26 24 29 29 C 1.38417 * 120.03074 * 197.90337 * 23 21 20 30 30 F 1.35104 * 120.00654 * 359.97438 * 29 23 21 31 31 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47532 * 299.99761 * 1 2 3 33 33 H 1.08994 * 109.47439 * 60.00467 * 1 2 3 34 34 H 1.08993 * 109.47423 * 304.99943 * 4 2 1 35 35 H 1.08997 * 109.46592 * 65.00177 * 4 2 1 36 36 H 0.96999 * 120.00540 * 0.02562 * 5 4 2 37 37 H 0.97004 * 120.00070 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.47191 * 269.99808 * 15 14 2 39 39 H 1.08992 * 109.47287 * 29.99810 * 15 14 2 40 40 H 1.08997 * 109.47078 * 150.00287 * 15 14 2 41 41 H 1.09008 * 117.50089 * 359.97185 * 20 18 16 42 42 H 1.08997 * 117.50528 * 144.97290 * 20 18 16 43 43 H 1.08007 * 119.98910 * 180.23233 * 26 24 23 44 44 H 1.08002 * 119.97791 * 179.75011 * 27 26 24 45 45 H 1.07997 * 119.98669 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1905 6 6 4.1839 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5673 -1.5379 -2.1512 9 7 6.2216 -1.0454 -1.1210 10 14 6.5001 -2.3729 -3.5377 11 1 5.5398 -2.8384 -4.5704 12 1 7.4511 -1.4080 -4.1458 13 1 7.2509 -3.5354 -2.9993 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.7932 -0.0355 2.0834 17 8 3.0857 1.1257 1.8917 18 6 3.2960 -0.7460 3.3135 19 1 3.5243 -1.8040 3.1850 20 6 2.7307 -0.3044 4.6650 21 6 4.1689 0.0524 4.2839 22 1 4.3798 1.0918 4.0325 23 6 5.2787 -0.6841 4.9887 24 6 5.0111 -1.8686 5.6532 25 9 3.7546 -2.3646 5.6706 26 6 6.0326 -2.5473 6.2960 27 6 7.3171 -2.0371 6.2832 28 6 7.5843 -0.8516 5.6249 29 6 6.5654 -0.1740 4.9769 30 9 6.8270 0.9846 4.3330 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.6054 -1.7198 -1.2951 35 1 1.7516 -0.1584 -2.1369 36 1 3.9823 -0.4627 -0.4315 37 1 7.1884 -1.1150 -1.0821 38 1 0.7376 -2.1443 1.9994 39 1 1.5295 -2.5968 0.4710 40 1 2.4629 -2.5817 1.9865 41 1 1.9954 0.5003 4.6644 42 1 2.5869 -1.0719 5.4255 43 1 5.8248 -3.4734 6.8114 44 1 8.1125 -2.5650 6.7883 45 1 8.5883 -0.4537 5.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319528358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:51 Heat of formation + Delta-G solvation = -67.261497 kcal Electronic energy + Delta-G solvation = -30039.093051 eV Core-core repulsion = 25693.604983 eV Total energy + Delta-G solvation = -4345.488068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.26429 -50.04938 -41.40211 -39.93560 -38.36612 -37.17110 -35.85759 -33.58234 -32.03689 -31.59015 -31.28491 -27.82770 -27.43557 -26.08945 -24.82047 -24.40826 -23.81695 -22.49820 -21.61516 -19.98445 -19.24422 -19.13222 -18.83013 -18.08625 -17.31890 -17.09511 -16.93509 -16.64886 -16.60382 -16.45980 -16.35613 -15.64426 -15.46928 -15.30337 -15.17170 -15.03854 -14.24217 -14.01221 -13.90315 -13.79769 -13.71447 -13.34695 -13.28874 -13.19007 -13.15573 -12.94787 -12.87288 -12.83009 -12.52758 -12.12200 -12.06888 -11.85065 -11.77210 -11.75131 -11.63681 -11.02203 -10.81897 -9.77337 -9.72838 -9.59309 -9.03339 -7.95463 -5.26709 -0.10062 -0.04314 1.42600 1.44864 1.45627 1.54990 1.98185 2.30614 2.52952 2.80860 2.85345 3.20721 3.37032 3.38863 3.47585 3.59757 3.70755 3.83894 3.85401 4.02288 4.08492 4.12555 4.23135 4.26033 4.32812 4.44013 4.61002 4.69595 4.74581 4.78676 4.80252 4.82540 4.87446 4.90651 4.92315 4.99613 5.06444 5.12746 5.14400 5.19287 5.28411 5.44976 5.64139 5.76799 6.23110 6.40430 7.16914 7.29387 8.05502 8.28995 9.27527 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.004187 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.876534 B = 6685.249261 C = 8513.484335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.064 0.936 4 C 0.141 3.859 5 N -0.744 5.744 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.078 4.078 9 N -0.970 5.970 10 Si 0.977 3.023 11 H -0.262 1.262 12 H -0.297 1.297 13 H -0.291 1.291 14 N -0.591 5.591 15 C 0.080 3.920 16 C 0.536 3.464 17 O -0.590 6.590 18 C -0.174 4.174 19 H 0.131 0.869 20 C -0.122 4.122 21 C -0.106 4.106 22 H 0.100 0.900 23 C -0.138 4.138 24 C 0.117 3.883 25 F -0.122 7.122 26 C -0.149 4.149 27 C -0.054 4.054 28 C -0.159 4.159 29 C 0.101 3.899 30 F -0.149 7.149 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.155 0.845 43 H 0.178 0.822 44 H 0.187 0.813 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -6.245 19.892 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.082 0.918 4 C 0.014 3.986 5 N -0.386 5.386 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.620 5.620 10 Si 0.805 3.195 11 H -0.186 1.186 12 H -0.224 1.224 13 H -0.218 1.218 14 N -0.322 5.322 15 C -0.062 4.062 16 C 0.326 3.674 17 O -0.472 6.472 18 C -0.195 4.195 19 H 0.148 0.852 20 C -0.158 4.158 21 C -0.125 4.125 22 H 0.118 0.882 23 C -0.139 4.139 24 C 0.098 3.902 25 F -0.101 7.101 26 C -0.168 4.168 27 C -0.071 4.071 28 C -0.177 4.177 29 C 0.082 3.918 30 F -0.127 7.127 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.201 0.799 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.172 0.828 43 H 0.195 0.805 44 H 0.205 0.795 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.572 -5.730 19.557 21.413 hybrid contribution 0.975 0.511 -1.215 1.640 sum -5.597 -5.219 18.341 19.874 Atomic orbital electron populations 1.21944 0.90941 1.03780 1.03114 1.21311 0.96297 0.96233 0.83762 0.91814 1.21218 0.84122 0.97960 0.95264 1.42564 1.02053 1.69879 1.24138 1.19706 0.89985 1.28367 0.99553 0.90196 1.25648 0.97565 1.03118 1.00653 1.69909 1.06798 1.52867 1.32446 0.85029 0.78457 0.77275 0.78711 1.18573 1.22442 1.21819 1.47687 1.49645 1.13440 1.21407 1.21925 1.01635 0.79775 1.02873 1.20008 0.77172 0.85940 0.84288 1.90642 1.59268 1.19458 1.77793 1.22227 1.06827 1.00293 0.90144 0.85158 1.23785 0.93278 1.04198 0.94572 1.20731 0.91411 0.98940 1.01386 0.88217 1.19223 0.93857 0.97394 1.03471 1.17309 0.80661 0.92359 0.99890 1.91310 1.37402 1.86509 1.94864 1.21629 0.91803 1.02230 1.01100 1.21364 0.97045 0.93160 0.95566 1.21588 0.99386 0.97322 0.99440 1.17707 0.93655 0.84059 0.96411 1.91499 1.94493 1.46904 1.79846 0.90244 0.91846 0.90091 0.94249 0.95162 0.79894 0.94312 0.89337 0.90872 0.91344 0.87688 0.82772 0.80500 0.79534 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.19 71.98 0.66 -2.80 16 2 C 0.13 4.62 2.80 44.99 0.13 4.75 16 3 H 0.06 2.77 6.90 -2.39 -0.02 2.75 16 4 C 0.14 5.89 5.50 86.38 0.48 6.36 16 5 N -0.74 -40.64 5.43 -343.47 -1.87 -42.51 16 6 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 7 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 8 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 9 N -0.97 -63.41 13.06 21.65 0.28 -63.13 16 10 Si 0.98 47.85 29.55 68.60 2.03 49.88 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 14 N -0.59 -20.96 2.24 -822.64 -1.85 -22.80 16 15 C 0.08 2.16 9.32 127.77 1.19 3.36 16 16 C 0.54 21.72 7.16 87.65 0.63 22.35 16 17 O -0.59 -29.18 15.59 -3.02 -0.05 -29.23 16 18 C -0.17 -5.74 4.55 -11.54 -0.05 -5.80 16 19 H 0.13 4.10 6.18 -2.39 -0.01 4.09 16 20 C -0.12 -3.10 9.37 30.59 0.29 -2.82 16 21 C -0.11 -3.48 5.39 -11.54 -0.06 -3.54 16 22 H 0.10 3.90 7.22 -2.39 -0.02 3.89 16 23 C -0.14 -3.97 5.65 -19.78 -0.11 -4.08 16 24 C 0.12 2.60 7.04 22.37 0.16 2.76 16 25 F -0.12 -2.54 12.91 44.97 0.58 -1.95 16 26 C -0.15 -2.27 10.02 22.32 0.22 -2.05 16 27 C -0.05 -0.74 10.04 22.26 0.22 -0.51 16 28 C -0.16 -3.21 10.02 22.32 0.22 -2.98 16 29 C 0.10 2.96 7.25 22.37 0.16 3.12 16 30 F -0.15 -5.34 16.51 44.97 0.74 -4.59 16 31 H 0.08 1.65 7.67 -2.39 -0.02 1.63 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.52 6.88 -2.39 -0.02 1.50 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.37 22.57 7.06 -92.71 -0.65 21.91 16 37 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.04 6.53 -2.39 -0.02 2.02 16 40 H 0.07 1.86 6.00 -2.39 -0.01 1.85 16 41 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 42 H 0.15 3.14 5.13 -2.39 -0.01 3.13 16 43 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 45 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -82.33 376.03 5.69 -76.63 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.38 Total: 37.22 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.44 Total: 0.48 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -3.43 Total: -128.44 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 1.32 Total: -6.55 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -82.33 5.69 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319528358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.373 kcal (2) G-P(sol) polarization free energy of solvation -82.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds