Wall clock time and date at job start Tue Mar 31 2020 20:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46907 * 2 1 4 4 C 1.53003 * 109.47041 * 240.00513 * 2 1 3 5 5 C 1.52996 * 109.47301 * 174.99629 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47213 * 60.00246 * 11 9 7 13 13 H 1.48502 * 109.47317 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47081 * 299.99875 * 11 9 7 15 15 N 1.46498 * 109.47235 * 120.00395 * 2 1 3 16 16 C 1.34773 * 119.99864 * 274.99788 * 15 2 1 17 17 O 1.21278 * 120.00284 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99853 * 180.02562 * 16 15 2 19 19 H 1.08999 * 115.55332 * 34.27531 * 18 16 15 20 20 C 1.53007 * 117.49845 * 248.60863 * 18 16 15 21 21 C 1.53000 * 59.99950 * 252.51038 * 20 18 16 22 22 H 1.09000 * 117.50269 * 107.48905 * 21 20 18 23 23 C 1.50700 * 117.49507 * 252.50942 * 21 20 18 24 24 C 1.38227 * 119.99008 * 8.62195 * 23 21 20 25 25 C 1.38180 * 120.05197 * 179.97438 * 24 23 21 26 26 C 1.38495 * 120.02715 * 359.97438 * 25 24 23 27 27 F 1.35096 * 120.01516 * 179.97438 * 26 25 24 28 28 C 1.38394 * 119.97299 * 0.02562 * 26 25 24 29 29 C 1.38441 * 119.94916 * 359.76843 * 28 26 25 30 30 F 1.35103 * 120.01613 * 180.22956 * 29 28 26 31 31 H 1.09003 * 109.47089 * 299.99534 * 1 2 3 32 32 H 1.09000 * 109.47427 * 59.99228 * 1 2 3 33 33 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47038 * 54.99639 * 4 2 1 35 35 H 1.09000 * 109.46939 * 295.00292 * 4 2 1 36 36 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 37 37 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 38 38 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 39 39 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 40 40 H 0.97004 * 119.99596 * 95.00231 * 15 2 1 41 41 H 1.09004 * 117.49282 * 0.02562 * 20 18 16 42 42 H 1.09000 * 117.49840 * 144.99487 * 20 18 16 43 43 H 1.08002 * 119.97678 * 359.97438 * 24 23 21 44 44 H 1.08008 * 119.99103 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.02891 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3139 6 7 4.0531 -1.3042 -2.5098 7 6 5.3947 -1.3357 -2.7825 8 1 6.0931 -0.8550 -2.1135 9 6 5.8569 -1.9855 -3.9187 10 7 5.0056 -2.5710 -4.7342 11 14 7.6870 -2.0292 -4.2903 12 1 8.4025 -2.7018 -3.1763 13 1 7.9184 -2.7781 -5.5515 14 1 8.1952 -0.6418 -4.4388 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8592 1.1585 2.4115 18 6 2.6500 -0.7287 3.5873 19 1 3.3939 -1.5056 3.4106 20 6 1.6583 -0.9476 4.7317 21 6 2.7743 0.0894 4.8743 22 1 2.4924 1.1414 4.8311 23 6 3.9161 -0.2403 5.8008 24 6 4.0216 -1.5071 6.3439 25 6 5.0684 -1.8109 7.1932 26 6 6.0135 -0.8465 7.5009 27 9 7.0366 -1.1437 8.3316 28 6 5.9090 0.4221 6.9577 29 6 4.8622 0.7242 6.1036 30 9 4.7614 1.9608 5.5689 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2058 36 1 3.9995 -1.0727 -0.4262 37 1 3.8531 0.4371 -1.3574 38 1 3.4258 -1.7356 -3.1108 39 1 5.3287 -3.0254 -5.5279 40 1 2.2491 -1.6319 1.1524 41 1 0.6420 -0.5781 4.5945 42 1 1.7498 -1.8683 5.3078 43 1 3.2853 -2.2599 6.1042 44 1 5.1496 -2.8009 7.6173 45 1 6.6453 1.1750 7.1974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320502032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:39 Heat of formation + Delta-G solvation = -75.128754 kcal Electronic energy + Delta-G solvation = -28060.320538 eV Core-core repulsion = 23714.491321 eV Total energy + Delta-G solvation = -4345.829217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.38933 -49.27734 -40.47373 -39.32540 -37.18046 -36.03154 -34.34732 -31.98101 -31.30626 -30.87115 -30.39907 -27.88758 -25.08043 -24.51854 -23.86584 -23.21088 -21.68589 -21.20306 -20.58439 -20.17086 -18.71111 -17.91894 -17.29415 -17.07940 -16.42787 -16.30856 -16.08527 -15.91335 -15.62032 -15.10385 -14.84944 -14.71326 -14.51729 -14.45760 -13.83435 -13.63445 -13.43781 -13.33768 -12.93000 -12.85182 -12.69824 -12.55952 -12.40260 -11.98942 -11.90044 -11.79431 -11.23060 -11.08838 -11.00081 -10.88982 -10.78350 -10.64248 -10.58406 -10.07930 -9.86719 -9.70540 -9.49755 -9.02885 -8.89537 -8.86237 -6.93728 -5.77797 -3.06617 0.45203 0.56120 2.40544 2.83468 3.13025 3.43731 3.44209 3.47999 3.49163 3.60297 3.98477 4.04178 4.11338 4.38773 4.42078 4.50246 4.56487 4.68316 4.76771 4.87967 5.00586 5.18611 5.24072 5.34513 5.37980 5.38748 5.49815 5.54096 5.55122 5.59167 5.61940 5.70709 5.74596 5.91770 5.92457 6.01981 6.22387 6.26522 6.31136 6.32582 6.54095 6.80285 6.85524 7.54586 7.68873 8.23977 8.41433 9.52364 10.09919 10.44644 11.45100 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009092 B = 0.002528 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.918235 B =11071.940023 C =13246.909345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.713 5.713 16 C 0.543 3.457 17 O -0.542 6.542 18 C -0.173 4.173 19 H 0.129 0.871 20 C -0.140 4.140 21 C -0.087 4.087 22 H 0.133 0.867 23 C -0.096 4.096 24 C -0.063 4.063 25 C -0.160 4.160 26 C 0.126 3.874 27 F -0.132 7.132 28 C -0.190 4.190 29 C 0.143 3.857 30 F -0.123 7.123 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.383 0.617 39 H 0.256 0.744 40 H 0.403 0.597 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 1.114 26.354 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.363 5.363 16 C 0.329 3.671 17 O -0.419 6.419 18 C -0.194 4.194 19 H 0.147 0.853 20 C -0.177 4.177 21 C -0.106 4.106 22 H 0.151 0.849 23 C -0.097 4.097 24 C -0.081 4.081 25 C -0.179 4.179 26 C 0.107 3.893 27 F -0.110 7.110 28 C -0.210 4.210 29 C 0.123 3.877 30 F -0.101 7.101 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.237 0.763 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.598 2.028 26.370 27.518 hybrid contribution 1.310 -0.504 -0.526 1.499 sum -6.288 1.524 25.844 26.642 Atomic orbital electron populations 1.22157 0.95422 1.01989 1.02286 1.20999 0.93565 0.97730 0.83714 0.89359 1.22065 0.98064 1.00790 0.96376 1.20630 0.90362 0.95615 0.90750 1.42360 1.05400 1.64918 1.25129 1.19192 0.83882 1.28693 1.05386 0.91306 1.24741 0.97741 1.00904 0.97595 1.69650 1.32898 1.40786 1.15006 0.86260 0.85074 0.77537 0.77288 1.21252 1.21641 1.21229 1.46032 1.66697 1.14223 1.09385 1.19477 0.77270 0.86657 0.83708 1.90697 1.50524 1.15741 1.84976 1.22423 1.04545 1.03580 0.88893 0.85337 1.23146 0.95448 1.00435 0.98636 1.20895 0.95479 0.99523 0.94656 0.84947 1.19239 0.96336 0.93723 1.00369 1.20815 0.97217 0.95363 0.94667 1.21194 0.95138 1.00104 1.01415 1.17312 0.86668 0.93344 0.92022 1.91540 1.56876 1.93607 1.68990 1.21056 1.00890 0.97643 1.01367 1.17086 0.94988 0.80691 0.94937 1.91572 1.95602 1.38935 1.84024 0.92472 0.91515 0.92501 0.90223 0.91336 0.96406 0.96451 0.78321 0.93454 0.76265 0.87378 0.87242 0.83615 0.83788 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.46 16 2 C 0.14 1.92 2.57 -67.93 -0.17 1.74 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.15 3.07 6.15 -4.04 -0.02 3.05 16 6 N -0.73 -18.62 5.60 -59.91 -0.34 -18.95 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 11 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 N -0.71 -8.57 4.53 -53.81 -0.24 -8.81 16 16 C 0.54 6.96 7.58 -10.99 -0.08 6.88 16 17 O -0.54 -8.88 15.92 5.56 0.09 -8.79 16 18 C -0.17 -1.62 5.82 -91.77 -0.53 -2.16 16 19 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 20 C -0.14 -0.96 9.56 -26.73 -0.26 -1.21 16 21 C -0.09 -0.81 5.31 -91.77 -0.49 -1.30 16 22 H 0.13 1.49 7.40 -51.93 -0.38 1.11 16 23 C -0.10 -0.83 5.62 -104.55 -0.59 -1.42 16 24 C -0.06 -0.41 9.29 -39.61 -0.37 -0.77 16 25 C -0.16 -1.06 10.02 -39.51 -0.40 -1.46 16 26 C 0.13 1.04 7.30 -39.43 -0.29 0.75 16 27 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 28 C -0.19 -1.64 10.01 -39.45 -0.39 -2.04 16 29 C 0.14 1.41 7.25 -39.43 -0.29 1.12 16 30 F -0.12 -1.44 16.61 2.25 0.04 -1.40 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.36 7.75 -51.93 -0.40 -0.05 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.46 6.18 -51.93 -0.32 0.14 16 43 H 0.15 0.57 6.02 -52.49 -0.32 0.26 16 44 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 45 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -33.66 388.76 -9.01 -42.68 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.25 Total: 8.52 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.90 Total: -7.91 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.15 Total: -55.34 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.66 -9.01 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320502032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.452 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds