Wall clock time and date at job start Tue Mar 31 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46907 * 2 1 4 4 C 1.53003 * 109.47041 * 240.00513 * 2 1 3 5 5 C 1.52996 * 109.47301 * 174.99629 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.36943 * 119.99752 * 179.72430 * 6 5 4 8 8 H 1.08002 * 119.99793 * 0.27665 * 7 6 5 9 9 C 1.38811 * 120.00012 * 180.27737 * 7 6 5 10 10 N 1.31624 * 119.99698 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47213 * 60.00246 * 11 9 7 13 13 H 1.48502 * 109.47317 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47081 * 299.99875 * 11 9 7 15 15 N 1.46498 * 109.47235 * 120.00395 * 2 1 3 16 16 C 1.34773 * 119.99864 * 274.99788 * 15 2 1 17 17 O 1.21278 * 120.00284 * 359.97438 * 16 15 2 18 18 C 1.50699 * 119.99853 * 180.02562 * 16 15 2 19 19 H 1.08999 * 115.55332 * 34.27531 * 18 16 15 20 20 C 1.53007 * 117.49845 * 248.60863 * 18 16 15 21 21 C 1.53000 * 59.99950 * 252.51038 * 20 18 16 22 22 H 1.09000 * 117.50269 * 107.48905 * 21 20 18 23 23 C 1.50700 * 117.49507 * 252.50942 * 21 20 18 24 24 C 1.38227 * 119.99008 * 8.62195 * 23 21 20 25 25 C 1.38180 * 120.05197 * 179.97438 * 24 23 21 26 26 C 1.38495 * 120.02715 * 359.97438 * 25 24 23 27 27 F 1.35096 * 120.01516 * 179.97438 * 26 25 24 28 28 C 1.38394 * 119.97299 * 0.02562 * 26 25 24 29 29 C 1.38441 * 119.94916 * 359.76843 * 28 26 25 30 30 F 1.35103 * 120.01613 * 180.22956 * 29 28 26 31 31 H 1.09003 * 109.47089 * 299.99534 * 1 2 3 32 32 H 1.09000 * 109.47427 * 59.99228 * 1 2 3 33 33 H 1.09003 * 109.47155 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47038 * 54.99639 * 4 2 1 35 35 H 1.09000 * 109.46939 * 295.00292 * 4 2 1 36 36 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 37 37 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 38 38 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 39 39 H 0.96999 * 119.99739 * 180.02562 * 10 9 7 40 40 H 0.97004 * 119.99596 * 95.00231 * 15 2 1 41 41 H 1.09004 * 117.49282 * 0.02562 * 20 18 16 42 42 H 1.09000 * 117.49840 * 144.99487 * 20 18 16 43 43 H 1.08002 * 119.97678 * 359.97438 * 24 23 21 44 44 H 1.08008 * 119.99103 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.02891 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3139 6 7 4.0531 -1.3042 -2.5098 7 6 5.3947 -1.3357 -2.7825 8 1 6.0931 -0.8550 -2.1135 9 6 5.8569 -1.9855 -3.9187 10 7 5.0056 -2.5710 -4.7342 11 14 7.6870 -2.0292 -4.2903 12 1 8.4025 -2.7018 -3.1763 13 1 7.9184 -2.7781 -5.5515 14 1 8.1952 -0.6418 -4.4388 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8592 1.1585 2.4115 18 6 2.6500 -0.7287 3.5873 19 1 3.3939 -1.5056 3.4106 20 6 1.6583 -0.9476 4.7317 21 6 2.7743 0.0894 4.8743 22 1 2.4924 1.1414 4.8311 23 6 3.9161 -0.2403 5.8008 24 6 4.0216 -1.5071 6.3439 25 6 5.0684 -1.8109 7.1932 26 6 6.0135 -0.8465 7.5009 27 9 7.0366 -1.1437 8.3316 28 6 5.9090 0.4221 6.9577 29 6 4.8622 0.7242 6.1036 30 9 4.7614 1.9608 5.5689 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2058 36 1 3.9995 -1.0727 -0.4262 37 1 3.8531 0.4371 -1.3574 38 1 3.4258 -1.7356 -3.1108 39 1 5.3287 -3.0254 -5.5279 40 1 2.2491 -1.6319 1.1524 41 1 0.6420 -0.5781 4.5945 42 1 1.7498 -1.8683 5.3078 43 1 3.2853 -2.2599 6.1042 44 1 5.1496 -2.8009 7.6173 45 1 6.6453 1.1750 7.1974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320502032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:38 Heat of formation + Delta-G solvation = -95.289567 kcal Electronic energy + Delta-G solvation = -28061.194777 eV Core-core repulsion = 23714.491321 eV Total energy + Delta-G solvation = -4346.703456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.07496 -50.03041 -41.33652 -40.09302 -38.18450 -37.10325 -36.06061 -33.61037 -32.23622 -31.85671 -31.18784 -29.42891 -26.13247 -25.55211 -25.09027 -23.86228 -23.21225 -22.07686 -21.63985 -21.09840 -19.38497 -19.22548 -18.63635 -18.01421 -17.33262 -17.01009 -16.93435 -16.72684 -16.61920 -16.36157 -15.98249 -15.59069 -15.51656 -15.43803 -15.26886 -15.13555 -14.88508 -14.29978 -14.18979 -13.66795 -13.54240 -13.36380 -13.20234 -13.11270 -12.90526 -12.87721 -12.60556 -12.40591 -12.37921 -12.31157 -12.01933 -11.94167 -11.71030 -11.64525 -11.55935 -10.96666 -10.87717 -10.10125 -10.07283 -9.54472 -9.02669 -7.97685 -5.26817 -0.16995 -0.03009 1.46210 1.48936 1.49635 1.55292 2.11004 2.30521 2.54169 2.80615 2.91973 3.35211 3.35732 3.36838 3.53822 3.61554 3.71189 3.82507 3.91211 4.03131 4.05943 4.14096 4.16578 4.23714 4.38968 4.55916 4.64715 4.66521 4.76028 4.77769 4.83415 4.86213 4.89925 4.93278 4.99593 5.05235 5.08187 5.21475 5.26384 5.28149 5.33254 5.46306 5.58177 5.72069 6.25058 6.58783 7.27029 7.31581 8.06463 8.30947 9.25406 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009092 B = 0.002528 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.918235 B =11071.940023 C =13246.909345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.063 0.937 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.251 4.251 8 H 0.070 0.930 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.972 3.028 12 H -0.276 1.276 13 H -0.292 1.292 14 H -0.281 1.281 15 N -0.707 5.707 16 C 0.537 3.463 17 O -0.586 6.586 18 C -0.181 4.181 19 H 0.148 0.852 20 C -0.107 4.107 21 C -0.101 4.101 22 H 0.102 0.898 23 C -0.098 4.098 24 C -0.053 4.053 25 C -0.148 4.148 26 C 0.113 3.887 27 F -0.138 7.138 28 C -0.196 4.196 29 C 0.111 3.889 30 F -0.144 7.144 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.024 0.976 37 H 0.002 0.998 38 H 0.376 0.624 39 H 0.253 0.747 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.182 0.818 44 H 0.173 0.827 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 -1.219 27.743 28.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.046 3.954 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.383 4.383 8 H 0.088 0.912 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.202 1.202 13 H -0.218 1.218 14 H -0.207 1.207 15 N -0.358 5.358 16 C 0.325 3.675 17 O -0.467 6.467 18 C -0.202 4.202 19 H 0.166 0.834 20 C -0.144 4.144 21 C -0.120 4.120 22 H 0.120 0.880 23 C -0.099 4.099 24 C -0.070 4.070 25 C -0.166 4.166 26 C 0.094 3.906 27 F -0.116 7.116 28 C -0.216 4.216 29 C 0.092 3.908 30 F -0.123 7.123 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.020 0.980 38 H 0.208 0.792 39 H 0.062 0.938 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.167 0.833 43 H 0.199 0.801 44 H 0.191 0.809 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.028 -0.309 27.793 28.931 hybrid contribution 1.432 0.269 -0.911 1.718 sum -6.597 -0.040 26.882 27.679 Atomic orbital electron populations 1.22065 0.93409 1.03106 1.02351 1.20813 0.95001 0.96196 0.83435 0.91872 1.21894 0.94429 1.01902 0.97373 1.20754 0.93636 0.93958 0.88903 1.42544 1.04495 1.65245 1.26501 1.19558 0.85349 1.28047 1.05363 0.91234 1.25544 1.02024 1.01129 0.97677 1.69794 1.34682 1.41838 1.15400 0.85239 0.80087 0.77556 0.77051 1.20187 1.21766 1.20737 1.45987 1.66307 1.14655 1.08858 1.20106 0.76422 0.86263 0.84701 1.90680 1.52503 1.17762 1.85716 1.22434 1.06360 1.03871 0.87559 0.83436 1.23339 0.94321 1.00619 0.96071 1.20763 0.97322 0.98745 0.95149 0.88011 1.19332 0.95695 0.94472 1.00418 1.21164 0.97587 0.94789 0.93456 1.21550 0.93964 1.00749 1.00344 1.17513 0.87190 0.93608 0.92335 1.91525 1.57290 1.93597 1.69222 1.21130 1.00773 0.98351 1.01323 1.17423 0.96430 0.80554 0.96394 1.91512 1.95846 1.40335 1.84574 0.93103 0.90789 0.90787 0.90274 0.89954 0.95789 0.97972 0.79173 0.93817 0.74979 0.87517 0.83323 0.80083 0.80933 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.48 71.98 0.68 -2.52 16 2 C 0.15 3.90 2.57 44.99 0.12 4.02 16 3 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 4 C -0.12 -3.46 4.87 30.59 0.15 -3.31 16 5 C 0.15 6.12 6.15 86.38 0.53 6.65 16 6 N -0.74 -37.80 5.60 -343.46 -1.92 -39.73 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 10 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 11 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 N -0.71 -16.19 4.53 -442.54 -2.00 -18.20 16 16 C 0.54 13.54 7.58 87.66 0.66 14.20 16 17 O -0.59 -19.82 15.92 -3.02 -0.05 -19.86 16 18 C -0.18 -3.07 5.82 -11.54 -0.07 -3.14 16 19 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 20 C -0.11 -1.13 9.56 30.60 0.29 -0.84 16 21 C -0.10 -1.80 5.31 -11.54 -0.06 -1.86 16 22 H 0.10 2.46 7.40 -2.39 -0.02 2.44 16 23 C -0.10 -1.58 5.62 -19.82 -0.11 -1.69 16 24 C -0.05 -0.49 9.29 22.25 0.21 -0.29 16 25 C -0.15 -1.49 10.02 22.32 0.22 -1.26 16 26 C 0.11 1.71 7.30 22.37 0.16 1.88 16 27 F -0.14 -2.31 17.27 44.97 0.78 -1.54 16 28 C -0.20 -3.44 10.01 22.36 0.22 -3.21 16 29 C 0.11 2.26 7.25 22.37 0.16 2.42 16 30 F -0.14 -3.67 16.61 44.97 0.75 -2.92 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.02 0.94 7.75 -2.38 -0.02 0.92 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.38 19.92 7.67 -92.71 -0.71 19.21 16 39 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.41 7.65 8.60 -92.71 -0.80 6.85 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.15 0.41 6.18 -2.39 -0.01 0.39 16 43 H 0.18 0.36 6.02 -2.91 -0.02 0.34 16 44 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 45 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -74.85 388.76 3.87 -70.99 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.47 Total: 27.49 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 4.48 Total: -5.98 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -3.65 Total: -116.36 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.52 Total: -4.46 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -74.85 3.87 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320502032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.303 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds