Wall clock time and date at job start Tue Mar 31 2020 20:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47315 * 2 1 4 4 C 1.53003 * 109.46920 * 119.99757 * 2 1 3 5 5 C 1.53005 * 109.46696 * 184.99360 * 4 2 1 6 6 N 1.46505 * 109.46904 * 180.02562 * 5 4 2 7 7 C 1.36931 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00121 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00072 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99871 * 11 9 7 15 15 N 1.46503 * 109.46960 * 239.99600 * 2 1 3 16 16 C 1.34774 * 119.99800 * 85.00229 * 15 2 1 17 17 O 1.21284 * 120.00028 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99931 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.54929 * 34.27010 * 18 16 15 20 20 C 1.53001 * 117.49395 * 248.60655 * 18 16 15 21 21 C 1.52993 * 117.49947 * 179.97438 * 18 16 15 22 22 H 1.09009 * 117.49914 * 359.97438 * 21 18 16 23 23 C 1.50693 * 117.49960 * 214.97688 * 21 18 16 24 24 C 1.38234 * 119.98727 * 299.99505 * 23 21 18 25 25 C 1.38187 * 120.05144 * 179.97438 * 24 23 21 26 26 C 1.38498 * 120.02614 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.01126 * 179.97438 * 26 25 24 28 28 C 1.38401 * 119.97328 * 0.02562 * 26 25 24 29 29 C 1.38440 * 119.94802 * 359.76064 * 28 26 25 30 30 F 1.35103 * 120.01138 * 180.23411 * 29 28 26 31 31 H 1.09009 * 109.47077 * 300.00141 * 1 2 3 32 32 H 1.08990 * 109.47289 * 60.00136 * 1 2 3 33 33 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47221 * 65.00312 * 4 2 1 35 35 H 1.08993 * 109.47355 * 304.99924 * 4 2 1 36 36 H 1.09003 * 109.46946 * 60.00823 * 5 4 2 37 37 H 1.08993 * 109.47679 * 300.00366 * 5 4 2 38 38 H 0.97000 * 119.99792 * 0.02562 * 6 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 40 40 H 0.97005 * 119.99839 * 265.00439 * 15 2 1 41 41 H 1.09003 * 117.50151 * 359.97438 * 20 18 16 42 42 H 1.09002 * 117.49609 * 144.99476 * 20 18 16 43 43 H 1.07998 * 119.97503 * 359.97438 * 24 23 21 44 44 H 1.08004 * 119.98588 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.02185 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3045 2.5095 7 6 5.3953 -1.3405 2.7793 8 1 6.0937 -0.8592 2.1108 9 6 5.8575 -1.9904 3.9155 10 7 5.0064 -2.5766 4.7305 11 14 7.6876 -2.0330 4.2877 12 1 8.0520 -0.8553 5.1155 13 1 8.0133 -3.2784 5.0281 14 1 8.4524 -1.9994 3.0151 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6488 -0.7290 -3.5877 19 1 2.3517 -1.7736 -3.6814 20 6 4.0305 -0.3375 -4.1155 21 6 2.7722 0.0888 -4.8748 22 1 2.4901 1.1409 -4.8316 23 6 2.4737 -0.6113 -6.1754 24 6 3.2169 -1.7140 -6.5530 25 6 2.9440 -2.3573 -7.7451 26 6 1.9249 -1.8981 -8.5629 27 9 1.6586 -2.5270 -9.7285 28 6 1.1801 -0.7942 -8.1859 29 6 1.4516 -0.1532 -6.9893 30 9 0.7222 0.9217 -6.6178 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7516 -1.7715 1.2057 35 1 1.6054 -0.2617 2.1370 36 1 3.8533 0.4369 1.3573 37 1 3.9994 -1.0729 0.4260 38 1 3.4260 -1.7365 3.1102 39 1 5.3295 -3.0310 5.5243 40 1 2.2489 -1.6319 -1.1525 41 1 4.5764 0.4344 -3.5729 42 1 4.6424 -1.1244 -4.5564 43 1 4.0115 -2.0730 -5.9157 44 1 3.5256 -3.2185 -8.0392 45 1 0.3850 -0.4357 -8.8228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320502035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:42 Heat of formation + Delta-G solvation = -75.434601 kcal Electronic energy + Delta-G solvation = -27933.549120 eV Core-core repulsion = 23587.706640 eV Total energy + Delta-G solvation = -4345.842480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.44327 -49.33900 -40.47568 -39.34995 -37.18204 -36.03168 -34.35537 -31.98775 -31.34875 -30.89515 -30.40629 -27.88875 -25.09545 -24.53879 -23.86902 -23.23968 -21.67758 -21.20125 -20.58935 -20.17695 -18.75360 -17.93872 -17.32339 -17.07889 -16.45118 -16.35410 -16.12487 -15.94091 -15.68149 -15.13271 -14.83949 -14.80390 -14.57762 -14.31484 -13.84598 -13.69489 -13.44108 -13.32590 -12.94661 -12.88136 -12.73602 -12.54605 -12.40370 -12.03304 -11.86214 -11.80708 -11.24916 -11.09219 -11.01821 -10.86072 -10.78900 -10.65342 -10.58898 -10.06677 -9.86603 -9.72112 -9.54504 -9.02744 -8.93645 -8.87740 -6.94833 -5.79017 -3.07787 0.40683 0.51137 2.41400 2.79248 3.12928 3.39487 3.41791 3.46857 3.48446 3.62011 3.93832 4.02402 4.08601 4.35896 4.42656 4.51108 4.55247 4.67085 4.74684 4.86391 4.98449 5.22553 5.25325 5.33200 5.34433 5.38582 5.47023 5.52340 5.53269 5.58471 5.66508 5.70880 5.75321 5.91303 5.92611 6.02476 6.22026 6.26441 6.26857 6.31925 6.53994 6.79121 6.84583 7.54560 7.67669 8.23976 8.39985 9.51032 10.08834 10.43454 11.43875 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002045 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.487552 B =13687.299371 C =14890.564903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.713 5.713 16 C 0.543 3.457 17 O -0.542 6.542 18 C -0.173 4.173 19 H 0.127 0.873 20 C -0.137 4.137 21 C -0.090 4.090 22 H 0.133 0.867 23 C -0.094 4.094 24 C -0.063 4.063 25 C -0.159 4.159 26 C 0.125 3.875 27 F -0.132 7.132 28 C -0.191 4.191 29 C 0.141 3.859 30 F -0.124 7.124 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.403 0.597 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 0.883 -26.579 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.364 5.364 16 C 0.329 3.671 17 O -0.419 6.419 18 C -0.194 4.194 19 H 0.145 0.855 20 C -0.174 4.174 21 C -0.108 4.108 22 H 0.151 0.849 23 C -0.095 4.095 24 C -0.081 4.081 25 C -0.178 4.178 26 C 0.105 3.895 27 F -0.110 7.110 28 C -0.210 4.210 29 C 0.121 3.879 30 F -0.102 7.102 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.237 0.763 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.538 1.774 -26.629 28.021 hybrid contribution 0.625 -0.677 0.360 0.989 sum -7.914 1.097 -26.269 27.457 Atomic orbital electron populations 1.22164 0.95442 1.02013 1.02329 1.20995 0.93564 0.97693 0.83703 0.89368 1.22068 0.98078 1.00799 0.96375 1.20630 0.90350 0.95584 0.90755 1.42371 1.05387 1.64904 1.25174 1.19224 0.83847 1.28564 1.05401 0.91250 1.24753 0.97749 1.00962 0.97631 1.69658 1.32810 1.40774 1.15006 0.86184 0.85036 0.77050 0.77889 1.21697 1.21749 1.20765 1.46035 1.66634 1.14302 1.09386 1.19489 0.77286 0.86686 0.83666 1.90699 1.50364 1.15908 1.84975 1.22393 1.03167 1.00713 0.93144 0.85536 1.23178 0.89215 1.03730 1.01300 1.20917 1.02794 1.00069 0.87048 0.84947 1.19263 0.96452 0.97606 0.96161 1.20865 0.98465 0.93198 0.95522 1.21212 0.98670 1.02623 0.95283 1.17315 0.96427 0.92546 0.83183 1.91539 1.93194 1.80968 1.45348 1.21038 1.03988 0.97942 0.98053 1.17084 0.91493 0.85945 0.93353 1.91565 1.75444 1.52047 1.91164 0.91502 0.92416 0.92522 0.91348 0.90232 0.96480 0.96338 0.78323 0.93509 0.76270 0.87087 0.87140 0.83483 0.83761 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 2 C 0.14 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.13 -2.03 4.87 -26.73 -0.13 -2.16 16 5 C 0.15 3.02 6.15 -4.04 -0.02 2.99 16 6 N -0.73 -18.38 5.60 -59.90 -0.34 -18.72 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 11 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 N -0.71 -8.55 4.53 -53.80 -0.24 -8.80 16 16 C 0.54 6.94 7.58 -10.98 -0.08 6.86 16 17 O -0.54 -8.87 15.92 5.55 0.09 -8.78 16 18 C -0.17 -1.62 5.82 -91.77 -0.53 -2.15 16 19 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.14 -1.10 9.56 -26.72 -0.26 -1.35 16 21 C -0.09 -0.83 5.31 -91.77 -0.49 -1.32 16 22 H 0.13 1.49 7.40 -51.92 -0.38 1.11 16 23 C -0.09 -0.77 5.62 -104.55 -0.59 -1.36 16 24 C -0.06 -0.39 9.29 -39.60 -0.37 -0.76 16 25 C -0.16 -0.97 10.03 -39.50 -0.40 -1.37 16 26 C 0.12 0.93 7.30 -39.43 -0.29 0.64 16 27 F -0.13 -1.07 17.27 2.25 0.04 -1.04 16 28 C -0.19 -1.47 10.01 -39.45 -0.39 -1.86 16 29 C 0.14 1.26 7.24 -39.43 -0.29 0.98 16 30 F -0.12 -1.32 16.61 2.25 0.04 -1.28 16 31 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 38 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 41 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.11 0.60 6.18 -51.93 -0.32 0.28 16 43 H 0.15 0.60 6.02 -52.49 -0.32 0.29 16 44 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -33.15 388.77 -9.01 -42.16 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.25 Total: 8.67 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.90 Total: -7.99 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.15 Total: -54.84 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.15 -9.01 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320502035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.276 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds