Wall clock time and date at job start Tue Mar 31 2020 20:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47315 * 2 1 4 4 C 1.53003 * 109.46920 * 119.99757 * 2 1 3 5 5 C 1.53005 * 109.46696 * 184.99360 * 4 2 1 6 6 N 1.46505 * 109.46904 * 180.02562 * 5 4 2 7 7 C 1.36931 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00121 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00072 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99871 * 11 9 7 15 15 N 1.46503 * 109.46960 * 239.99600 * 2 1 3 16 16 C 1.34774 * 119.99800 * 85.00229 * 15 2 1 17 17 O 1.21284 * 120.00028 * 359.97438 * 16 15 2 18 18 C 1.50703 * 119.99931 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.54929 * 34.27010 * 18 16 15 20 20 C 1.53001 * 117.49395 * 248.60655 * 18 16 15 21 21 C 1.52993 * 117.49947 * 179.97438 * 18 16 15 22 22 H 1.09009 * 117.49914 * 359.97438 * 21 18 16 23 23 C 1.50693 * 117.49960 * 214.97688 * 21 18 16 24 24 C 1.38234 * 119.98727 * 299.99505 * 23 21 18 25 25 C 1.38187 * 120.05144 * 179.97438 * 24 23 21 26 26 C 1.38498 * 120.02614 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.01126 * 179.97438 * 26 25 24 28 28 C 1.38401 * 119.97328 * 0.02562 * 26 25 24 29 29 C 1.38440 * 119.94802 * 359.76064 * 28 26 25 30 30 F 1.35103 * 120.01138 * 180.23411 * 29 28 26 31 31 H 1.09009 * 109.47077 * 300.00141 * 1 2 3 32 32 H 1.08990 * 109.47289 * 60.00136 * 1 2 3 33 33 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47221 * 65.00312 * 4 2 1 35 35 H 1.08993 * 109.47355 * 304.99924 * 4 2 1 36 36 H 1.09003 * 109.46946 * 60.00823 * 5 4 2 37 37 H 1.08993 * 109.47679 * 300.00366 * 5 4 2 38 38 H 0.97000 * 119.99792 * 0.02562 * 6 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 40 40 H 0.97005 * 119.99839 * 265.00439 * 15 2 1 41 41 H 1.09003 * 117.50151 * 359.97438 * 20 18 16 42 42 H 1.09002 * 117.49609 * 144.99476 * 20 18 16 43 43 H 1.07998 * 119.97503 * 359.97438 * 24 23 21 44 44 H 1.08004 * 119.98588 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.02185 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3045 2.5095 7 6 5.3953 -1.3405 2.7793 8 1 6.0937 -0.8592 2.1108 9 6 5.8575 -1.9904 3.9155 10 7 5.0064 -2.5766 4.7305 11 14 7.6876 -2.0330 4.2877 12 1 8.0520 -0.8553 5.1155 13 1 8.0133 -3.2784 5.0281 14 1 8.4524 -1.9994 3.0151 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6488 -0.7290 -3.5877 19 1 2.3517 -1.7736 -3.6814 20 6 4.0305 -0.3375 -4.1155 21 6 2.7722 0.0888 -4.8748 22 1 2.4901 1.1409 -4.8316 23 6 2.4737 -0.6113 -6.1754 24 6 3.2169 -1.7140 -6.5530 25 6 2.9440 -2.3573 -7.7451 26 6 1.9249 -1.8981 -8.5629 27 9 1.6586 -2.5270 -9.7285 28 6 1.1801 -0.7942 -8.1859 29 6 1.4516 -0.1532 -6.9893 30 9 0.7222 0.9217 -6.6178 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7516 -1.7715 1.2057 35 1 1.6054 -0.2617 2.1370 36 1 3.8533 0.4369 1.3573 37 1 3.9994 -1.0729 0.4260 38 1 3.4260 -1.7365 3.1102 39 1 5.3295 -3.0310 5.5243 40 1 2.2489 -1.6319 -1.1525 41 1 4.5764 0.4344 -3.5729 42 1 4.6424 -1.1244 -4.5564 43 1 4.0115 -2.0730 -5.9157 44 1 3.5256 -3.2185 -8.0392 45 1 0.3850 -0.4357 -8.8228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320502035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:42 Heat of formation + Delta-G solvation = -94.903772 kcal Electronic energy + Delta-G solvation = -27934.393367 eV Core-core repulsion = 23587.706640 eV Total energy + Delta-G solvation = -4346.686727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.06284 -50.02149 -41.34061 -40.09383 -38.18107 -37.10401 -36.04875 -33.59463 -32.23423 -31.85092 -31.18358 -29.42064 -26.14427 -25.54372 -25.09935 -23.85832 -23.19193 -22.04896 -21.65804 -21.10268 -19.37595 -19.20551 -18.63027 -18.00015 -17.33304 -17.00278 -16.96383 -16.68496 -16.62076 -16.35176 -15.98461 -15.58152 -15.47415 -15.41809 -15.34361 -15.08438 -14.80309 -14.30342 -14.25103 -13.66655 -13.53612 -13.37122 -13.21375 -13.11113 -12.90189 -12.88776 -12.60094 -12.40963 -12.37905 -12.25487 -11.99026 -11.94464 -11.71620 -11.62844 -11.56162 -10.95692 -10.88035 -10.09523 -10.07781 -9.54477 -9.00313 -7.95401 -5.24358 -0.16858 -0.02511 1.48186 1.48996 1.49941 1.58265 2.08729 2.31377 2.56092 2.81160 2.92057 3.34247 3.36512 3.38344 3.54307 3.62000 3.71467 3.81851 3.91878 4.00863 4.06308 4.13174 4.17017 4.21982 4.40175 4.55707 4.65685 4.66198 4.77638 4.77814 4.83069 4.85163 4.89635 4.93785 4.98730 5.03610 5.08792 5.22387 5.26664 5.28456 5.33265 5.49288 5.57936 5.72243 6.27066 6.58310 7.26433 7.33632 8.08960 8.32753 9.27883 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002045 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.487552 B =13687.299371 C =14890.564903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.066 0.934 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.746 5.746 7 C -0.246 4.246 8 H 0.073 0.927 9 C -0.075 4.075 10 N -0.968 5.968 11 Si 0.973 3.027 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.268 1.268 15 N -0.707 5.707 16 C 0.537 3.463 17 O -0.585 6.585 18 C -0.175 4.175 19 H 0.155 0.845 20 C -0.121 4.121 21 C -0.095 4.095 22 H 0.102 0.898 23 C -0.097 4.097 24 C -0.054 4.054 25 C -0.148 4.148 26 C 0.115 3.885 27 F -0.137 7.137 28 C -0.193 4.193 29 C 0.115 3.885 30 F -0.142 7.142 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.005 0.995 37 H 0.028 0.972 38 H 0.375 0.625 39 H 0.252 0.748 40 H 0.414 0.586 41 H 0.097 0.903 42 H 0.146 0.854 43 H 0.177 0.823 44 H 0.171 0.829 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -0.859 -27.761 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.085 0.915 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.378 4.378 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.217 1.217 13 H -0.220 1.220 14 H -0.193 1.193 15 N -0.358 5.358 16 C 0.325 3.675 17 O -0.466 6.466 18 C -0.196 4.196 19 H 0.173 0.827 20 C -0.158 4.158 21 C -0.114 4.114 22 H 0.121 0.879 23 C -0.098 4.098 24 C -0.072 4.072 25 C -0.166 4.166 26 C 0.095 3.905 27 F -0.116 7.116 28 C -0.213 4.213 29 C 0.096 3.904 30 F -0.121 7.121 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.023 0.977 37 H 0.046 0.954 38 H 0.207 0.793 39 H 0.061 0.939 40 H 0.250 0.750 41 H 0.116 0.884 42 H 0.164 0.836 43 H 0.194 0.806 44 H 0.189 0.811 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.367 0.030 -27.848 28.806 hybrid contribution 0.236 -0.084 0.672 0.717 sum -7.131 -0.054 -27.176 28.096 Atomic orbital electron populations 1.22083 0.93849 1.02963 1.02262 1.20803 0.94680 0.96370 0.83482 0.91548 1.21892 0.94754 1.01763 0.97237 1.20757 0.93342 0.94108 0.88969 1.42573 1.04518 1.65219 1.26572 1.19601 0.85279 1.27661 1.05266 0.90920 1.25572 1.02042 1.01332 0.97815 1.69806 1.34618 1.41974 1.15446 0.85152 0.80134 0.76593 0.77958 1.21657 1.21980 1.19273 1.45989 1.66206 1.14746 1.08862 1.20113 0.76461 0.86299 0.84651 1.90682 1.52258 1.17959 1.85711 1.22444 1.04306 1.01554 0.91305 0.82704 1.23321 0.88633 1.03963 0.99916 1.20744 1.04057 0.98788 0.87787 0.87941 1.19279 0.96684 0.98342 0.95498 1.21137 0.98331 0.91968 0.95715 1.21525 0.97760 1.02804 0.94531 1.17488 0.97034 0.92592 0.83353 1.91529 1.93322 1.81010 1.45718 1.21117 1.04315 0.98082 0.97740 1.17356 0.92394 0.86245 0.94421 1.91515 1.76064 1.53083 1.91439 0.90657 0.93425 0.91011 0.90151 0.90348 0.97712 0.95435 0.79282 0.93945 0.74962 0.88442 0.83581 0.80619 0.81136 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.48 71.98 0.68 -2.73 16 2 C 0.15 3.92 2.57 44.99 0.12 4.04 16 3 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 4 C -0.12 -3.43 4.87 30.60 0.15 -3.28 16 5 C 0.15 5.94 6.15 86.38 0.53 6.47 16 6 N -0.75 -37.10 5.60 -343.44 -1.92 -39.02 16 7 C -0.25 -13.61 9.99 84.04 0.84 -12.77 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 10 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 11 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 N -0.71 -16.14 4.53 -442.52 -2.00 -18.14 16 16 C 0.54 13.51 7.58 87.66 0.66 14.18 16 17 O -0.59 -19.78 15.92 -3.04 -0.05 -19.82 16 18 C -0.18 -2.98 5.82 -11.54 -0.07 -3.04 16 19 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.12 -1.68 9.56 30.60 0.29 -1.38 16 21 C -0.09 -1.70 5.31 -11.54 -0.06 -1.76 16 22 H 0.10 2.47 7.40 -2.38 -0.02 2.45 16 23 C -0.10 -1.46 5.62 -19.82 -0.11 -1.57 16 24 C -0.05 -0.49 9.29 22.26 0.21 -0.28 16 25 C -0.15 -1.33 10.03 22.32 0.22 -1.11 16 26 C 0.11 1.51 7.30 22.37 0.16 1.68 16 27 F -0.14 -2.03 17.27 44.97 0.78 -1.25 16 28 C -0.19 -2.89 10.01 22.36 0.22 -2.66 16 29 C 0.12 2.07 7.24 22.37 0.16 2.23 16 30 F -0.14 -3.23 16.61 44.97 0.75 -2.49 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.03 1.02 7.75 -2.39 -0.02 1.01 16 38 H 0.38 19.64 7.67 -92.71 -0.71 18.93 16 39 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 40 H 0.41 7.60 8.60 -92.70 -0.80 6.81 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.15 0.94 6.18 -2.39 -0.01 0.93 16 43 H 0.18 0.53 6.02 -2.91 -0.02 0.51 16 44 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 45 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -72.71 388.77 3.87 -68.84 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.47 Total: 28.28 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 4.48 Total: -5.80 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -3.65 Total: -115.20 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 1.52 Total: -3.74 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.71 3.87 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320502035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.064 kcal (2) G-P(sol) polarization free energy of solvation -72.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds