Wall clock time and date at job start Tue Mar 31 2020 20:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47192 * 2 1 4 4 N 1.46496 * 109.47515 * 120.00389 * 2 1 3 5 5 C 1.36944 * 119.99714 * 275.00242 * 4 2 1 6 6 H 1.07996 * 119.99736 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99872 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99909 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46745 * 89.99961 * 9 7 5 11 11 H 1.48497 * 109.47380 * 209.99637 * 9 7 5 12 12 H 1.48499 * 109.47076 * 329.99958 * 9 7 5 13 13 C 1.53001 * 109.47017 * 240.00262 * 2 1 3 14 14 H 1.09005 * 109.46925 * 299.99901 * 13 2 1 15 15 C 1.53004 * 109.47055 * 179.97438 * 13 2 1 16 16 N 1.46496 * 109.47396 * 59.99930 * 13 2 1 17 17 C 1.34777 * 120.00005 * 205.00215 * 16 13 2 18 18 O 1.21552 * 120.00247 * 359.97438 * 17 16 13 19 19 C 1.47846 * 119.99679 * 179.97438 * 17 16 13 20 20 C 1.39585 * 120.14418 * 180.02562 * 19 17 16 21 21 C 1.37957 * 119.85485 * 179.97438 * 20 19 17 22 22 C 1.38361 * 120.14477 * 359.97438 * 21 20 19 23 23 P 1.81399 * 119.85348 * 179.97438 * 22 21 20 24 24 C 1.82296 * 109.46860 * 150.00011 * 23 22 21 25 25 C 1.82300 * 109.46963 * 270.00036 * 23 22 21 26 26 O 1.47999 * 109.46786 * 30.00242 * 23 22 21 27 27 C 1.38361 * 120.29055 * 0.25680 * 22 21 20 28 28 C 1.37960 * 120.14652 * 359.48862 * 27 22 21 29 29 H 1.09002 * 109.47762 * 60.00009 * 1 2 3 30 30 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47186 * 299.99676 * 1 2 3 32 32 H 0.96996 * 120.00525 * 94.99264 * 4 2 1 33 33 H 0.97000 * 119.99537 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.47039 * 299.99659 * 15 13 2 35 35 H 1.09002 * 109.47153 * 60.00382 * 15 13 2 36 36 H 1.08998 * 109.46777 * 179.97438 * 15 13 2 37 37 H 0.97005 * 119.99822 * 24.99731 * 16 13 2 38 38 H 1.07999 * 120.06793 * 359.95529 * 20 19 17 39 39 H 1.07993 * 119.92939 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47169 * 60.00459 * 24 23 22 41 41 H 1.09002 * 109.47255 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.47891 * 299.99949 * 24 23 22 43 43 H 1.08994 * 109.47223 * 60.00413 * 25 23 22 44 44 H 1.09002 * 109.46915 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47091 * 299.99666 * 25 23 22 46 46 H 1.08003 * 119.92627 * 179.74288 * 27 22 21 47 47 H 1.07999 * 120.07315 * 180.25576 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0404 2.4241 7 6 2.6114 -0.6621 3.5092 8 7 2.9236 -1.9393 3.4503 9 14 2.7905 0.2700 5.1182 10 1 1.5227 0.1797 5.8862 11 1 3.8946 -0.3239 5.9141 12 1 3.0964 1.6949 4.8334 13 6 2.0399 -0.7212 -1.2493 14 1 1.6766 -1.7489 -1.2493 15 6 3.5700 -0.7206 -1.2496 16 7 1.5516 -0.0306 -2.4454 17 6 1.4229 -0.7030 -3.6064 18 8 1.7123 -1.8822 -3.6611 19 6 0.9295 -0.0061 -4.8134 20 6 0.7945 -0.6996 -6.0172 21 6 0.3330 -0.0435 -7.1397 22 6 0.0039 1.2988 -7.0738 23 15 -0.6014 2.1537 -8.5547 24 6 -1.7343 3.4942 -8.0620 25 6 0.8098 2.8565 -9.4701 26 8 -1.3212 1.1924 -9.4197 27 6 0.1400 1.9932 -5.8848 28 6 0.5953 1.3477 -4.7537 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6318 1.1525 33 1 3.2470 -2.3966 4.2423 34 1 3.9329 0.3071 -1.2499 35 1 3.9337 -1.2343 -0.3597 36 1 3.9332 -1.2348 -2.1394 37 1 1.3209 0.9106 -2.4018 38 1 1.0510 -1.7473 -6.0698 39 1 0.2285 -0.5788 -8.0718 40 1 -1.2042 4.2022 -7.4249 41 1 -2.0977 4.0083 -8.9518 42 1 -2.5781 3.0742 -7.5146 43 1 1.4871 2.0550 -9.7648 44 1 0.4461 3.3698 -10.3603 45 1 1.3398 3.5644 -8.8331 46 1 -0.1148 3.0418 -5.8411 47 1 0.6971 1.8899 -3.8253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329201285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:35 Heat of formation + Delta-G solvation = -61.524676 kcal Electronic energy + Delta-G solvation = -26221.123883 eV Core-core repulsion = 22482.966947 eV Total energy + Delta-G solvation = -3738.156937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -40.40606 -38.61223 -36.77449 -34.12435 -33.40008 -32.23199 -31.56344 -31.17407 -29.52166 -29.18766 -28.45184 -28.17467 -24.49376 -24.05034 -23.16941 -22.43413 -20.46668 -20.18429 -18.36626 -17.43566 -17.13540 -16.16477 -15.30961 -15.24641 -15.19327 -14.96504 -14.58979 -14.33319 -14.14799 -13.99186 -13.89196 -13.69707 -13.57135 -13.53179 -13.37163 -13.17032 -13.04368 -12.61676 -12.50619 -12.36481 -11.97315 -11.90692 -11.77808 -11.61223 -11.26283 -11.02626 -10.89875 -10.76207 -10.28163 -10.17879 -10.08941 -10.02726 -9.93387 -9.72424 -9.63582 -9.47158 -9.10553 -8.86589 -7.06039 -5.83586 -3.13733 0.18857 0.88647 1.09243 2.55002 3.09338 3.38209 3.43335 3.45219 3.47423 4.05424 4.19634 4.24897 4.39412 4.40640 4.47956 4.50201 4.55974 4.80383 4.86470 4.95833 5.04229 5.19177 5.26817 5.40686 5.41948 5.46920 5.48888 5.58897 5.63038 5.66938 5.75350 5.80946 5.92083 6.01937 6.10461 6.30054 6.33563 6.39734 6.42731 6.52650 6.72523 6.84354 6.94320 7.10569 7.50886 7.61936 8.17181 8.33736 9.45209 9.99702 10.34854 11.38605 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.001986 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.435660 B =14097.690063 C =14633.125676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.050 0.950 4 N -0.717 5.717 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.929 5.929 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.134 3.866 14 H 0.088 0.912 15 C -0.152 4.152 16 N -0.709 5.709 17 C 0.549 3.451 18 O -0.530 6.530 19 C -0.090 4.090 20 C -0.078 4.078 21 C -0.047 4.047 22 C -0.713 4.713 23 P 2.557 2.443 24 C -0.811 4.811 25 C -0.808 4.808 26 O -1.002 7.002 27 C -0.083 4.083 28 C -0.105 4.105 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.396 0.604 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 11.863 -25.991 29.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.068 0.932 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.577 5.577 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.360 5.360 17 C 0.335 3.665 18 O -0.408 6.408 19 C -0.093 4.093 20 C -0.097 4.097 21 C -0.064 4.064 22 C -0.702 4.702 23 P 2.627 2.373 24 C -0.855 4.855 25 C -0.853 4.853 26 O -1.105 7.105 27 C -0.101 4.101 28 C -0.124 4.124 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.231 0.769 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.303 11.728 -25.283 28.371 hybrid contribution 0.564 1.486 1.842 2.433 sum -4.739 13.214 -23.441 27.323 Atomic orbital electron populations 1.22462 0.99033 1.01241 0.99785 1.20381 0.92129 0.95524 0.86129 0.93221 1.42283 1.78197 1.10714 1.04761 1.19169 1.37085 0.93849 0.87075 0.91183 1.24756 1.01943 0.95988 0.98084 1.69662 1.50463 1.08607 1.28978 0.86191 0.77334 0.78722 0.83894 1.21706 1.21740 1.20814 1.21426 0.94589 0.97714 0.83268 0.89414 1.22053 0.94701 1.01808 1.02511 1.46040 1.66279 1.13900 1.09780 1.18240 0.78395 0.86724 0.83155 1.90795 1.49864 1.15302 1.84813 1.20367 0.99905 0.94258 0.94794 1.21550 0.95827 1.01097 0.91237 1.21029 0.93351 0.92681 0.99364 1.33225 1.12767 1.05886 1.18362 0.89772 0.48836 0.50331 0.48351 1.31852 1.19589 1.22797 1.11308 1.31836 1.24955 1.13097 1.15458 1.95065 1.76719 1.67683 1.71025 1.20910 0.97372 0.99281 0.92508 1.21443 0.98015 0.93834 0.99109 0.94754 0.93284 0.92526 0.77987 0.93388 0.93077 0.89879 0.93398 0.76881 0.83764 0.83198 0.89144 0.87231 0.86894 0.87032 0.87336 0.89131 0.85340 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.33 37.15 0.35 -2.51 16 2 C 0.17 3.15 2.52 -67.93 -0.17 2.98 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -17.12 4.43 -53.43 -0.24 -17.36 16 5 C -0.24 -6.40 9.93 -15.05 -0.15 -6.55 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 9 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.13 2.26 2.21 -67.93 -0.15 2.11 16 14 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 15 C -0.15 -2.60 9.33 37.16 0.35 -2.25 16 16 N -0.71 -9.62 4.33 -54.75 -0.24 -9.86 16 17 C 0.55 7.99 7.74 -12.33 -0.10 7.89 16 18 O -0.53 -9.64 16.01 5.32 0.09 -9.55 16 19 C -0.09 -1.04 5.87 -104.97 -0.62 -1.66 16 20 C -0.08 -0.84 9.60 -39.18 -0.38 -1.21 16 21 C -0.05 -0.39 9.67 -39.64 -0.38 -0.77 16 22 C -0.71 -4.78 6.19 -39.49 -0.24 -5.03 16 23 P 2.56 11.50 5.23 -42.89 -0.22 11.28 16 24 C -0.81 -3.17 10.55 101.05 1.07 -2.11 16 25 C -0.81 -3.27 11.06 101.05 1.12 -2.16 16 26 O -1.00 -8.84 18.40 21.61 0.40 -8.44 16 27 C -0.08 -0.55 9.56 -39.64 -0.38 -0.93 16 28 C -0.11 -0.93 9.54 -39.19 -0.37 -1.30 16 29 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.39 9.96 7.58 -40.82 -0.31 9.65 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.61 7.45 -51.93 -0.39 1.22 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.40 4.25 6.42 -40.82 -0.26 3.99 16 38 H 0.14 1.54 7.65 -52.49 -0.40 1.14 16 39 H 0.15 0.93 8.03 -52.49 -0.42 0.51 16 40 H 0.09 0.20 7.64 -51.93 -0.40 -0.20 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.13 0.39 7.27 -52.48 -0.38 0.01 16 47 H 0.13 0.89 6.41 -52.49 -0.34 0.55 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -36.23 401.89 -6.06 -42.29 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.45 Total: 9.36 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.16 Total: -13.91 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.25 Total: -53.94 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.48 Total: -17.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 15 Polarization: 11.50 SS G_CDS: -0.22 Total: 11.28 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.23 -6.06 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.236 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds