Wall clock time and date at job start Tue Mar 31 2020 20:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47192 * 2 1 4 4 N 1.46496 * 109.47515 * 120.00389 * 2 1 3 5 5 C 1.36944 * 119.99714 * 275.00242 * 4 2 1 6 6 H 1.07996 * 119.99736 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99872 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99909 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46745 * 89.99961 * 9 7 5 11 11 H 1.48497 * 109.47380 * 209.99637 * 9 7 5 12 12 H 1.48499 * 109.47076 * 329.99958 * 9 7 5 13 13 C 1.53001 * 109.47017 * 240.00262 * 2 1 3 14 14 H 1.09005 * 109.46925 * 299.99901 * 13 2 1 15 15 C 1.53004 * 109.47055 * 179.97438 * 13 2 1 16 16 N 1.46496 * 109.47396 * 59.99930 * 13 2 1 17 17 C 1.34777 * 120.00005 * 205.00215 * 16 13 2 18 18 O 1.21552 * 120.00247 * 359.97438 * 17 16 13 19 19 C 1.47846 * 119.99679 * 179.97438 * 17 16 13 20 20 C 1.39585 * 120.14418 * 180.02562 * 19 17 16 21 21 C 1.37957 * 119.85485 * 179.97438 * 20 19 17 22 22 C 1.38361 * 120.14477 * 359.97438 * 21 20 19 23 23 P 1.81399 * 119.85348 * 179.97438 * 22 21 20 24 24 C 1.82296 * 109.46860 * 150.00011 * 23 22 21 25 25 C 1.82300 * 109.46963 * 270.00036 * 23 22 21 26 26 O 1.47999 * 109.46786 * 30.00242 * 23 22 21 27 27 C 1.38361 * 120.29055 * 0.25680 * 22 21 20 28 28 C 1.37960 * 120.14652 * 359.48862 * 27 22 21 29 29 H 1.09002 * 109.47762 * 60.00009 * 1 2 3 30 30 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47186 * 299.99676 * 1 2 3 32 32 H 0.96996 * 120.00525 * 94.99264 * 4 2 1 33 33 H 0.97000 * 119.99537 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.47039 * 299.99659 * 15 13 2 35 35 H 1.09002 * 109.47153 * 60.00382 * 15 13 2 36 36 H 1.08998 * 109.46777 * 179.97438 * 15 13 2 37 37 H 0.97005 * 119.99822 * 24.99731 * 16 13 2 38 38 H 1.07999 * 120.06793 * 359.95529 * 20 19 17 39 39 H 1.07993 * 119.92939 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47169 * 60.00459 * 24 23 22 41 41 H 1.09002 * 109.47255 * 179.97438 * 24 23 22 42 42 H 1.08998 * 109.47891 * 299.99949 * 24 23 22 43 43 H 1.08994 * 109.47223 * 60.00413 * 25 23 22 44 44 H 1.09002 * 109.46915 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47091 * 299.99666 * 25 23 22 46 46 H 1.08003 * 119.92627 * 179.74288 * 27 22 21 47 47 H 1.07999 * 120.07315 * 180.25576 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0404 2.4241 7 6 2.6114 -0.6621 3.5092 8 7 2.9236 -1.9393 3.4503 9 14 2.7905 0.2700 5.1182 10 1 1.5227 0.1797 5.8862 11 1 3.8946 -0.3239 5.9141 12 1 3.0964 1.6949 4.8334 13 6 2.0399 -0.7212 -1.2493 14 1 1.6766 -1.7489 -1.2493 15 6 3.5700 -0.7206 -1.2496 16 7 1.5516 -0.0306 -2.4454 17 6 1.4229 -0.7030 -3.6064 18 8 1.7123 -1.8822 -3.6611 19 6 0.9295 -0.0061 -4.8134 20 6 0.7945 -0.6996 -6.0172 21 6 0.3330 -0.0435 -7.1397 22 6 0.0039 1.2988 -7.0738 23 15 -0.6014 2.1537 -8.5547 24 6 -1.7343 3.4942 -8.0620 25 6 0.8098 2.8565 -9.4701 26 8 -1.3212 1.1924 -9.4197 27 6 0.1400 1.9932 -5.8848 28 6 0.5953 1.3477 -4.7537 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6318 1.1525 33 1 3.2470 -2.3966 4.2423 34 1 3.9329 0.3071 -1.2499 35 1 3.9337 -1.2343 -0.3597 36 1 3.9332 -1.2348 -2.1394 37 1 1.3209 0.9106 -2.4018 38 1 1.0510 -1.7473 -6.0698 39 1 0.2285 -0.5788 -8.0718 40 1 -1.2042 4.2022 -7.4249 41 1 -2.0977 4.0083 -8.9518 42 1 -2.5781 3.0742 -7.5146 43 1 1.4871 2.0550 -9.7648 44 1 0.4461 3.3698 -10.3603 45 1 1.3398 3.5644 -8.8331 46 1 -0.1148 3.0418 -5.8411 47 1 0.6971 1.8899 -3.8253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:34 Heat of formation + Delta-G solvation = -86.733080 kcal Electronic energy + Delta-G solvation = -26222.217002 eV Core-core repulsion = 22482.966947 eV Total energy + Delta-G solvation = -3739.250055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44887 -39.51640 -38.22953 -35.72724 -33.99939 -33.71303 -32.38378 -32.15867 -30.66970 -30.18546 -29.63456 -28.43576 -25.95232 -25.50464 -24.04268 -23.54224 -21.65986 -21.52925 -19.54556 -19.06038 -17.87926 -17.31179 -16.64161 -16.38868 -15.99905 -15.87828 -15.70280 -15.34623 -15.23560 -14.92886 -14.83061 -14.53922 -14.45492 -14.25772 -14.14441 -14.01582 -13.83821 -13.68668 -13.48736 -13.24795 -12.98277 -12.95177 -12.79251 -12.77690 -12.65162 -12.54281 -12.32293 -12.21118 -12.16555 -11.76700 -11.53626 -11.17480 -11.00894 -10.68668 -10.59043 -10.43480 -10.14552 -10.11385 -9.04584 -7.93854 -5.23349 -0.54856 0.24587 0.75371 1.47619 1.48931 1.57066 1.61787 1.94634 2.57207 2.63759 3.40139 3.50772 3.61378 3.74047 3.82644 3.84608 3.97782 3.99516 4.13663 4.15486 4.23301 4.25812 4.28815 4.29960 4.53299 4.55239 4.62945 4.69976 4.71314 4.81812 4.87394 4.88943 4.97355 5.00633 5.08101 5.10401 5.18646 5.21458 5.25207 5.26265 5.42058 5.47123 5.53975 5.76083 6.26451 6.41664 6.73902 7.07122 7.33001 8.05585 8.29021 9.29498 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.001986 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.435660 B =14097.690063 C =14633.125676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.065 0.935 4 N -0.730 5.730 5 C -0.232 4.232 6 H 0.082 0.918 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.266 1.266 13 C 0.149 3.851 14 H 0.060 0.940 15 C -0.143 4.143 16 N -0.696 5.696 17 C 0.549 3.451 18 O -0.577 6.577 19 C -0.115 4.115 20 C -0.098 4.098 21 C -0.056 4.056 22 C -0.705 4.705 23 P 2.624 2.376 24 C -0.831 4.831 25 C -0.828 4.828 26 O -1.052 7.052 27 C -0.079 4.079 28 C -0.107 4.107 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.372 0.628 33 H 0.249 0.751 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.414 0.586 38 H 0.130 0.870 39 H 0.165 0.835 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.175 0.825 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 15.898 -27.342 32.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.082 0.918 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.100 0.900 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.227 1.227 12 H -0.191 1.191 13 C 0.043 3.957 14 H 0.078 0.922 15 C -0.202 4.202 16 N -0.348 5.348 17 C 0.337 3.663 18 O -0.458 6.458 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.074 4.074 22 C -0.695 4.695 23 P 2.690 2.310 24 C -0.876 4.876 25 C -0.872 4.872 26 O -1.152 7.152 27 C -0.097 4.097 28 C -0.125 4.125 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.203 0.797 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.252 0.748 38 H 0.148 0.852 39 H 0.182 0.818 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.192 0.808 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.313 15.828 -26.694 31.669 hybrid contribution 0.826 0.315 2.108 2.285 sum -5.487 16.143 -24.586 29.919 Atomic orbital electron populations 1.22320 0.97521 1.00580 1.01151 1.20554 0.92939 0.95672 0.84847 0.91751 1.42474 1.78458 1.10255 1.05898 1.19580 1.34758 0.94284 0.87786 0.90038 1.25562 1.03086 0.96849 1.01491 1.69832 1.52599 1.10289 1.29338 0.85161 0.76641 0.78175 0.79889 1.21750 1.22709 1.19077 1.20979 0.94275 0.96441 0.83983 0.92193 1.21931 0.94902 1.02297 1.01036 1.45761 1.65971 1.14546 1.08519 1.18766 0.77323 0.86254 0.83976 1.90769 1.51942 1.17497 1.85568 1.20178 1.02496 0.95706 0.93402 1.21583 0.97119 1.00879 0.92138 1.21266 0.93173 0.93740 0.99180 1.33662 1.11019 1.05252 1.19570 0.87904 0.47621 0.49044 0.46401 1.31979 1.19830 1.23430 1.12335 1.31964 1.25243 1.13727 1.16309 1.95039 1.78091 1.69659 1.72414 1.21482 0.95508 1.01375 0.91312 1.21752 0.97293 0.92531 1.00956 0.90913 0.95008 0.93517 0.79652 0.94188 0.91487 0.92710 0.93486 0.74791 0.85249 0.81759 0.86735 0.86679 0.87105 0.87344 0.86678 0.87376 0.80754 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.33 71.98 0.67 -4.48 16 2 C 0.17 6.13 2.52 44.99 0.11 6.24 16 3 H 0.06 2.18 8.08 -2.38 -0.02 2.17 16 4 N -0.73 -35.19 4.43 -322.94 -1.43 -36.62 16 5 C -0.23 -12.27 9.93 84.03 0.83 -11.43 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 8 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 9 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.15 5.01 2.21 44.99 0.10 5.11 16 14 H 0.06 2.39 7.58 -2.38 -0.02 2.37 16 15 C -0.14 -4.94 9.33 71.98 0.67 -4.27 16 16 N -0.70 -18.01 4.33 -445.40 -1.93 -19.94 16 17 C 0.55 15.96 7.74 86.79 0.67 16.63 16 18 O -0.58 -21.95 16.01 -3.88 -0.06 -22.01 16 19 C -0.11 -2.54 5.87 -20.09 -0.12 -2.66 16 20 C -0.10 -2.11 9.60 22.53 0.22 -1.90 16 21 C -0.06 -0.87 9.67 22.23 0.22 -0.66 16 22 C -0.71 -7.44 6.19 22.33 0.14 -7.30 16 23 P 2.62 16.24 5.23 -40.88 -0.21 16.03 16 24 C -0.83 -3.39 10.55 113.37 1.20 -2.20 16 25 C -0.83 -4.30 11.06 113.37 1.25 -3.04 16 26 O -1.05 -16.97 18.40 -41.19 -0.76 -17.73 16 27 C -0.08 -0.73 9.56 22.23 0.21 -0.51 16 28 C -0.11 -1.53 9.54 22.53 0.21 -1.31 16 29 H 0.07 1.83 7.45 -2.39 -0.02 1.81 16 30 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.37 19.90 7.58 -92.71 -0.70 19.19 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 2.20 7.45 -2.39 -0.02 2.18 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 7.64 6.42 -92.70 -0.60 7.04 16 38 H 0.13 3.03 7.65 -2.91 -0.02 3.01 16 39 H 0.16 1.93 8.03 -2.91 -0.02 1.91 16 40 H 0.11 -0.09 7.64 -2.39 -0.02 -0.10 16 41 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 42 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.18 -0.05 7.27 -2.91 -0.02 -0.07 16 47 H 0.15 1.39 6.41 -2.91 -0.02 1.37 16 Total: -1.00 -81.27 401.89 4.45 -76.82 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.32 Total: 30.57 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 6.86 Total: -15.68 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -3.08 Total: -115.17 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.82 Total: -39.74 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 15 Polarization: 16.24 SS G_CDS: -0.21 Total: 16.03 kcal Total: -81.27 4.45 -76.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.914 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds