Wall clock time and date at job start Tue Mar 31 2020 20:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47264 * 2 1 4 4 N 1.46496 * 109.47468 * 120.00063 * 2 1 3 5 5 C 1.34776 * 119.99940 * 275.00018 * 4 2 1 6 6 O 1.21550 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.47850 * 120.00185 * 179.97438 * 5 4 2 8 8 C 1.39574 * 120.14431 * 179.97438 * 7 5 4 9 9 C 1.37962 * 119.84981 * 180.02562 * 8 7 5 10 10 C 1.38358 * 120.14613 * 0.02806 * 9 8 7 11 11 P 1.81399 * 119.85210 * 179.97438 * 10 9 8 12 12 C 1.82300 * 109.47008 * 209.99962 * 11 10 9 13 13 C 1.82295 * 109.47272 * 90.00115 * 11 10 9 14 14 O 1.48006 * 109.47080 * 329.99704 * 11 10 9 15 15 C 1.38351 * 120.29322 * 0.23010 * 10 9 8 16 16 C 1.37968 * 120.14217 * 359.48563 * 15 10 9 17 17 C 1.53006 * 109.47009 * 240.00005 * 2 1 3 18 18 H 1.08995 * 109.46896 * 299.99810 * 17 2 1 19 19 C 1.53002 * 109.47009 * 180.02562 * 17 2 1 20 20 N 1.46496 * 109.46958 * 59.99745 * 17 2 1 21 21 C 1.36939 * 120.00184 * 204.99943 * 20 17 2 22 22 H 1.07996 * 119.99536 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00275 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99979 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99787 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47442 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47053 * 119.99970 * 25 23 21 28 28 H 1.48505 * 109.47033 * 239.99415 * 25 23 21 29 29 H 1.09004 * 109.46642 * 300.00367 * 1 2 3 30 30 H 1.09000 * 109.46938 * 59.99633 * 1 2 3 31 31 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00170 * 94.99575 * 4 2 1 33 33 H 1.08000 * 120.07347 * 0.02562 * 8 7 5 34 34 H 1.08005 * 119.92258 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.47243 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.47611 * 300.00206 * 12 11 10 37 37 H 1.09004 * 109.46913 * 60.00370 * 12 11 10 38 38 H 1.09004 * 109.46990 * 299.99834 * 13 11 10 39 39 H 1.09002 * 109.47217 * 59.99880 * 13 11 10 40 40 H 1.09001 * 109.47496 * 180.02562 * 13 11 10 41 41 H 1.08001 * 119.93029 * 179.74467 * 15 10 9 42 42 H 1.08003 * 120.06993 * 180.25123 * 16 15 10 43 43 H 1.08998 * 109.46904 * 180.02562 * 19 17 2 44 44 H 1.09003 * 109.47264 * 299.99995 * 19 17 2 45 45 H 1.09003 * 109.47144 * 59.99887 * 19 17 2 46 46 H 0.97000 * 120.00170 * 25.00398 * 20 17 2 47 47 H 0.97003 * 120.00091 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0182 2.3571 6 8 1.8585 1.1612 2.4116 7 6 2.6396 -0.7153 3.5644 8 6 2.7745 -0.0218 4.7681 9 6 3.2351 -0.6781 5.8908 10 6 3.5633 -2.0206 5.8252 11 15 4.1687 -2.8755 7.3062 12 6 5.3006 -4.2168 6.8134 13 6 2.7576 -3.5771 8.2224 14 8 4.8896 -1.9143 8.1706 15 6 3.4369 -2.7125 4.6339 16 6 2.9720 -2.0695 3.5052 17 6 2.0400 -0.7213 -1.2493 18 1 1.6767 -1.7489 -1.2492 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0307 -2.4454 21 6 1.4208 -0.7138 -3.6250 22 1 1.6773 -1.7617 -3.6734 23 6 0.9585 -0.0593 -4.7585 24 7 0.6454 1.2177 -4.6994 25 14 0.7794 -0.9914 -6.3674 26 1 1.1934 -2.4037 -6.1700 27 1 -0.6375 -0.9476 -6.8097 28 1 1.6404 -0.3636 -7.4017 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6317 1.1526 33 1 2.5190 1.0263 4.8204 34 1 3.3404 -0.1425 6.8228 35 1 5.6648 -4.7303 7.7033 36 1 4.7699 -4.9247 6.1767 37 1 6.1445 -3.7973 6.2656 38 1 2.0808 -2.7750 8.5171 39 1 2.2268 -4.2849 7.5857 40 1 3.1213 -4.0904 9.1125 41 1 3.6987 -3.7593 4.5883 42 1 2.8699 -2.6118 2.5768 43 1 3.9333 -1.2353 -2.1392 44 1 3.9338 0.3057 -1.2487 45 1 3.9330 -1.2359 -0.3590 46 1 1.3209 0.9105 -2.4019 47 1 0.3220 1.6750 -5.4914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329201292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:40 Heat of formation + Delta-G solvation = -61.619039 kcal Electronic energy + Delta-G solvation = -26221.202630 eV Core-core repulsion = 22483.041602 eV Total energy + Delta-G solvation = -3738.161028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.40706 -38.61315 -36.77549 -34.12605 -33.39953 -32.23309 -31.56426 -31.17443 -29.52195 -29.18841 -28.45391 -28.17461 -24.49407 -24.05356 -23.16989 -22.43535 -20.46731 -20.18551 -18.36685 -17.43743 -17.13594 -16.16557 -15.30940 -15.24718 -15.19549 -14.96688 -14.58983 -14.33442 -14.14886 -13.99239 -13.89085 -13.69387 -13.57377 -13.53039 -13.37147 -13.17309 -13.04351 -12.61729 -12.51025 -12.36424 -11.97478 -11.90644 -11.78003 -11.61280 -11.26386 -11.03425 -10.90182 -10.77175 -10.25357 -10.17948 -10.08952 -10.02536 -9.93074 -9.72927 -9.63572 -9.47140 -9.11023 -8.86956 -7.06121 -5.83891 -3.13999 0.18876 0.88607 1.09228 2.54966 3.09275 3.37838 3.43308 3.45764 3.47380 4.05379 4.19704 4.24724 4.39395 4.40678 4.47944 4.50103 4.55873 4.80305 4.86451 4.95775 5.04195 5.19071 5.26785 5.40643 5.41832 5.46905 5.48839 5.58829 5.63013 5.66810 5.75320 5.80855 5.92056 6.01815 6.10410 6.29915 6.33469 6.39712 6.42632 6.52535 6.72431 6.84285 6.94248 7.10498 7.50823 7.62300 8.17134 8.33405 9.44979 9.99492 10.34620 11.38377 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.001986 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.347237 B =14097.794229 C =14633.346560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.088 0.912 4 N -0.709 5.709 5 C 0.549 3.451 6 O -0.530 6.530 7 C -0.090 4.090 8 C -0.078 4.078 9 C -0.047 4.047 10 C -0.713 4.713 11 P 2.557 2.443 12 C -0.811 4.811 13 C -0.808 4.808 14 O -1.002 7.002 15 C -0.083 4.083 16 C -0.105 4.105 17 C 0.169 3.831 18 H 0.050 0.950 19 C -0.165 4.165 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.396 0.604 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.034 0.966 46 H 0.386 0.614 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -11.880 26.011 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.106 0.894 4 N -0.360 5.360 5 C 0.335 3.665 6 O -0.408 6.408 7 C -0.093 4.093 8 C -0.097 4.097 9 C -0.064 4.064 10 C -0.702 4.702 11 P 2.627 2.373 12 C -0.856 4.856 13 C -0.853 4.853 14 O -1.105 7.105 15 C -0.101 4.101 16 C -0.124 4.124 17 C 0.058 3.942 18 H 0.068 0.932 19 C -0.225 4.225 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.231 0.769 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.220 0.780 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.349 -11.751 25.305 28.408 hybrid contribution -0.578 -1.476 -1.842 2.430 sum 4.770 -13.226 23.463 27.353 Atomic orbital electron populations 1.22054 0.94699 1.01810 1.02509 1.21426 0.94591 0.97716 0.83268 0.89414 1.46038 1.66279 1.13899 1.09782 1.18242 0.78385 0.86730 0.83159 1.90794 1.49859 1.15293 1.84826 1.20363 0.99931 0.94239 0.94787 1.21549 0.95824 1.01108 0.91234 1.21032 0.93360 0.92659 0.99375 1.33220 1.12805 1.05904 1.18320 0.89773 0.48838 0.50330 0.48350 1.31853 1.19566 1.22821 1.11313 1.31838 1.24953 1.13086 1.15469 1.95066 1.76687 1.67694 1.71046 1.20909 0.97335 0.99313 0.92504 1.21445 0.97985 0.93842 0.99139 1.20382 0.92135 0.95522 0.86125 0.93222 1.22462 0.99031 1.01244 0.99787 1.42291 1.78178 1.10717 1.04779 1.19214 1.36970 0.93862 0.87054 0.91125 1.24756 1.01969 0.95985 0.98098 1.69671 1.50517 1.08617 1.28896 0.86121 0.77333 0.78717 0.83989 1.20616 1.21837 1.21845 0.93401 0.89873 0.93080 0.76881 0.83763 0.83194 0.87227 0.89137 0.86899 0.87031 0.89130 0.87336 0.85333 0.85032 0.92524 0.93284 0.94745 0.77990 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.33 37.16 0.35 -2.25 16 2 C 0.13 2.26 2.21 -67.93 -0.15 2.11 16 3 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 4 N -0.71 -9.61 4.33 -54.75 -0.24 -9.85 16 5 C 0.55 7.98 7.74 -12.33 -0.10 7.89 16 6 O -0.53 -9.64 16.01 5.32 0.09 -9.55 16 7 C -0.09 -1.04 5.87 -104.97 -0.62 -1.66 16 8 C -0.08 -0.84 9.60 -39.18 -0.38 -1.21 16 9 C -0.05 -0.39 9.67 -39.64 -0.38 -0.77 16 10 C -0.71 -4.78 6.19 -39.50 -0.24 -5.02 16 11 P 2.56 11.50 5.23 -42.89 -0.22 11.27 16 12 C -0.81 -3.17 10.53 101.05 1.06 -2.10 16 13 C -0.81 -3.28 11.06 101.05 1.12 -2.16 16 14 O -1.00 -8.83 18.40 21.61 0.40 -8.44 16 15 C -0.08 -0.55 9.56 -39.64 -0.38 -0.93 16 16 C -0.11 -0.93 9.54 -39.18 -0.37 -1.30 16 17 C 0.17 3.15 2.52 -67.93 -0.17 2.98 16 18 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 19 C -0.16 -2.85 9.34 37.16 0.35 -2.51 16 20 N -0.72 -17.12 4.43 -53.43 -0.24 -17.35 16 21 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 25 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.61 7.45 -51.93 -0.39 1.22 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.40 4.25 6.42 -40.82 -0.26 3.99 16 33 H 0.14 1.54 7.65 -52.49 -0.40 1.14 16 34 H 0.15 0.93 8.03 -52.48 -0.42 0.51 16 35 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.20 7.64 -51.93 -0.40 -0.20 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.13 0.39 7.25 -52.49 -0.38 0.01 16 42 H 0.13 0.89 6.41 -52.48 -0.34 0.55 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.48 7.44 -51.93 -0.39 0.09 16 46 H 0.39 9.95 7.58 -40.82 -0.31 9.64 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -36.25 401.85 -6.06 -42.31 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.44 Total: 9.32 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.16 Total: -13.90 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.25 Total: -53.93 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.48 Total: -17.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 15 Polarization: 11.50 SS G_CDS: -0.22 Total: 11.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.25 -6.06 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.308 kcal (2) G-P(sol) polarization free energy of solvation -36.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds