Wall clock time and date at job start Tue Mar 31 2020 20:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47264 * 2 1 4 4 N 1.46496 * 109.47468 * 120.00063 * 2 1 3 5 5 C 1.34776 * 119.99940 * 275.00018 * 4 2 1 6 6 O 1.21550 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.47850 * 120.00185 * 179.97438 * 5 4 2 8 8 C 1.39574 * 120.14431 * 179.97438 * 7 5 4 9 9 C 1.37962 * 119.84981 * 180.02562 * 8 7 5 10 10 C 1.38358 * 120.14613 * 0.02806 * 9 8 7 11 11 P 1.81399 * 119.85210 * 179.97438 * 10 9 8 12 12 C 1.82300 * 109.47008 * 209.99962 * 11 10 9 13 13 C 1.82295 * 109.47272 * 90.00115 * 11 10 9 14 14 O 1.48006 * 109.47080 * 329.99704 * 11 10 9 15 15 C 1.38351 * 120.29322 * 0.23010 * 10 9 8 16 16 C 1.37968 * 120.14217 * 359.48563 * 15 10 9 17 17 C 1.53006 * 109.47009 * 240.00005 * 2 1 3 18 18 H 1.08995 * 109.46896 * 299.99810 * 17 2 1 19 19 C 1.53002 * 109.47009 * 180.02562 * 17 2 1 20 20 N 1.46496 * 109.46958 * 59.99745 * 17 2 1 21 21 C 1.36939 * 120.00184 * 204.99943 * 20 17 2 22 22 H 1.07996 * 119.99536 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00275 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99979 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99787 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47442 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47053 * 119.99970 * 25 23 21 28 28 H 1.48505 * 109.47033 * 239.99415 * 25 23 21 29 29 H 1.09004 * 109.46642 * 300.00367 * 1 2 3 30 30 H 1.09000 * 109.46938 * 59.99633 * 1 2 3 31 31 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00170 * 94.99575 * 4 2 1 33 33 H 1.08000 * 120.07347 * 0.02562 * 8 7 5 34 34 H 1.08005 * 119.92258 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.47243 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.47611 * 300.00206 * 12 11 10 37 37 H 1.09004 * 109.46913 * 60.00370 * 12 11 10 38 38 H 1.09004 * 109.46990 * 299.99834 * 13 11 10 39 39 H 1.09002 * 109.47217 * 59.99880 * 13 11 10 40 40 H 1.09001 * 109.47496 * 180.02562 * 13 11 10 41 41 H 1.08001 * 119.93029 * 179.74467 * 15 10 9 42 42 H 1.08003 * 120.06993 * 180.25123 * 16 15 10 43 43 H 1.08998 * 109.46904 * 180.02562 * 19 17 2 44 44 H 1.09003 * 109.47264 * 299.99995 * 19 17 2 45 45 H 1.09003 * 109.47144 * 59.99887 * 19 17 2 46 46 H 0.97000 * 120.00170 * 25.00398 * 20 17 2 47 47 H 0.97003 * 120.00091 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0182 2.3571 6 8 1.8585 1.1612 2.4116 7 6 2.6396 -0.7153 3.5644 8 6 2.7745 -0.0218 4.7681 9 6 3.2351 -0.6781 5.8908 10 6 3.5633 -2.0206 5.8252 11 15 4.1687 -2.8755 7.3062 12 6 5.3006 -4.2168 6.8134 13 6 2.7576 -3.5771 8.2224 14 8 4.8896 -1.9143 8.1706 15 6 3.4369 -2.7125 4.6339 16 6 2.9720 -2.0695 3.5052 17 6 2.0400 -0.7213 -1.2493 18 1 1.6767 -1.7489 -1.2492 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0307 -2.4454 21 6 1.4208 -0.7138 -3.6250 22 1 1.6773 -1.7617 -3.6734 23 6 0.9585 -0.0593 -4.7585 24 7 0.6454 1.2177 -4.6994 25 14 0.7794 -0.9914 -6.3674 26 1 1.1934 -2.4037 -6.1700 27 1 -0.6375 -0.9476 -6.8097 28 1 1.6404 -0.3636 -7.4017 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6317 1.1526 33 1 2.5190 1.0263 4.8204 34 1 3.3404 -0.1425 6.8228 35 1 5.6648 -4.7303 7.7033 36 1 4.7699 -4.9247 6.1767 37 1 6.1445 -3.7973 6.2656 38 1 2.0808 -2.7750 8.5171 39 1 2.2268 -4.2849 7.5857 40 1 3.1213 -4.0904 9.1125 41 1 3.6987 -3.7593 4.5883 42 1 2.8699 -2.6118 2.5768 43 1 3.9333 -1.2353 -2.1392 44 1 3.9338 0.3057 -1.2487 45 1 3.9330 -1.2359 -0.3590 46 1 1.3209 0.9105 -2.4019 47 1 0.3220 1.6750 -5.4914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:39 Heat of formation + Delta-G solvation = -86.849411 kcal Electronic energy + Delta-G solvation = -26222.296701 eV Core-core repulsion = 22483.041602 eV Total energy + Delta-G solvation = -3739.255100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44937 -39.51698 -38.23022 -35.72902 -33.99908 -33.71328 -32.38428 -32.15850 -30.67046 -30.18679 -29.63416 -28.43556 -25.95607 -25.50468 -24.04291 -23.54257 -21.65993 -21.52979 -19.54701 -19.06160 -17.87947 -17.31300 -16.64303 -16.38944 -16.00157 -15.87576 -15.70223 -15.34662 -15.23629 -14.93038 -14.83139 -14.53919 -14.45647 -14.25596 -14.14544 -14.01615 -13.83708 -13.68716 -13.48613 -13.24967 -12.98644 -12.97475 -12.79241 -12.78075 -12.65570 -12.54331 -12.32769 -12.20995 -12.11276 -11.76994 -11.53546 -11.17468 -11.02405 -10.68874 -10.58974 -10.43433 -10.14559 -10.11335 -9.04712 -7.94156 -5.23600 -0.54803 0.24577 0.75376 1.47617 1.47975 1.57695 1.61792 1.94572 2.56989 2.63755 3.40058 3.50777 3.61385 3.73999 3.82587 3.84637 3.97679 3.99432 4.13621 4.15485 4.23353 4.25850 4.28827 4.29952 4.53309 4.55263 4.62862 4.69937 4.71325 4.81830 4.87393 4.88914 4.97349 5.00632 5.08098 5.10398 5.18616 5.21463 5.25179 5.26266 5.42091 5.47205 5.54128 5.76093 6.26332 6.41666 6.73852 7.07138 7.32838 8.05378 8.28777 9.29428 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026227 B = 0.001986 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.347237 B =14097.794229 C =14633.346560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.149 3.851 3 H 0.060 0.940 4 N -0.696 5.696 5 C 0.549 3.451 6 O -0.577 6.577 7 C -0.115 4.115 8 C -0.098 4.098 9 C -0.056 4.056 10 C -0.705 4.705 11 P 2.624 2.376 12 C -0.831 4.831 13 C -0.828 4.828 14 O -1.052 7.052 15 C -0.079 4.079 16 C -0.107 4.107 17 C 0.169 3.831 18 H 0.065 0.935 19 C -0.156 4.156 20 N -0.730 5.730 21 C -0.231 4.231 22 H 0.082 0.918 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.971 3.029 26 H -0.262 1.262 27 H -0.297 1.297 28 H -0.298 1.298 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.414 0.586 33 H 0.130 0.870 34 H 0.165 0.835 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.175 0.825 42 H 0.155 0.845 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.372 0.628 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -15.920 27.371 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.043 3.957 3 H 0.078 0.922 4 N -0.348 5.348 5 C 0.337 3.663 6 O -0.458 6.458 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.074 4.074 10 C -0.695 4.695 11 P 2.690 2.310 12 C -0.876 4.876 13 C -0.872 4.872 14 O -1.152 7.152 15 C -0.097 4.097 16 C -0.125 4.125 17 C 0.060 3.940 18 H 0.083 0.917 19 C -0.216 4.216 20 N -0.371 5.371 21 C -0.363 4.363 22 H 0.100 0.900 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.801 3.199 26 H -0.186 1.186 27 H -0.224 1.224 28 H -0.226 1.226 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.252 0.748 33 H 0.148 0.852 34 H 0.182 0.818 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.192 0.808 42 H 0.172 0.828 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.203 0.797 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.387 -15.855 26.726 31.725 hybrid contribution -0.851 -0.302 -2.110 2.295 sum 5.536 -16.158 24.616 29.961 Atomic orbital electron populations 1.21932 0.94904 1.02302 1.01031 1.20978 0.94273 0.96443 0.83984 0.92194 1.45758 1.65971 1.14545 1.08521 1.18767 0.77311 0.86260 0.83982 1.90769 1.51938 1.17488 1.85581 1.20174 1.02519 0.95687 0.93395 1.21582 0.97117 1.00890 0.92134 1.21269 0.93181 0.93719 0.99191 1.33656 1.11051 1.05267 1.19534 0.87906 0.47622 0.49045 0.46401 1.31981 1.19810 1.23451 1.12338 1.31966 1.25243 1.13714 1.16319 1.95040 1.78060 1.69668 1.72434 1.21481 0.95488 1.01388 0.91315 1.21754 0.97268 0.92538 1.00977 1.20555 0.92950 0.95674 0.84839 0.91744 1.22320 0.97511 1.00588 1.01153 1.42482 1.78430 1.10259 1.05916 1.19616 1.34613 0.94269 0.87759 0.90010 1.25558 1.03129 0.96844 1.01496 1.69836 1.52660 1.10305 1.29288 0.85097 0.76562 0.78332 0.79893 1.18643 1.22404 1.22586 0.93491 0.92708 0.91484 0.74791 0.85248 0.81754 0.86678 0.86729 0.87101 0.87343 0.87380 0.86678 0.80758 0.82765 0.93513 0.95002 0.90905 0.79652 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.33 71.98 0.67 -4.27 16 2 C 0.15 5.00 2.21 45.00 0.10 5.10 16 3 H 0.06 2.38 7.58 -2.39 -0.02 2.37 16 4 N -0.70 -17.99 4.33 -445.40 -1.93 -19.92 16 5 C 0.55 15.95 7.74 86.79 0.67 16.62 16 6 O -0.58 -21.94 16.01 -3.87 -0.06 -22.00 16 7 C -0.11 -2.54 5.87 -20.09 -0.12 -2.66 16 8 C -0.10 -2.11 9.60 22.53 0.22 -1.90 16 9 C -0.06 -0.87 9.67 22.23 0.22 -0.66 16 10 C -0.71 -7.43 6.19 22.33 0.14 -7.30 16 11 P 2.62 16.22 5.23 -40.88 -0.21 16.01 16 12 C -0.83 -3.38 10.53 113.37 1.19 -2.18 16 13 C -0.83 -4.30 11.06 113.37 1.25 -3.05 16 14 O -1.05 -16.96 18.40 -41.20 -0.76 -17.72 16 15 C -0.08 -0.72 9.56 22.23 0.21 -0.51 16 16 C -0.11 -1.53 9.54 22.53 0.21 -1.31 16 17 C 0.17 6.12 2.52 45.00 0.11 6.23 16 18 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 19 C -0.16 -5.15 9.34 71.98 0.67 -4.47 16 20 N -0.73 -35.16 4.43 -322.94 -1.43 -36.59 16 21 C -0.23 -12.18 9.93 84.03 0.83 -11.34 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 24 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 25 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.20 7.45 -2.39 -0.02 2.18 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.41 7.63 6.42 -92.71 -0.60 7.03 16 33 H 0.13 3.03 7.65 -2.91 -0.02 3.00 16 34 H 0.16 1.93 8.03 -2.91 -0.02 1.91 16 35 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.11 -0.09 7.64 -2.39 -0.02 -0.11 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.18 -0.04 7.25 -2.91 -0.02 -0.06 16 42 H 0.15 1.38 6.41 -2.91 -0.02 1.37 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.82 7.44 -2.39 -0.02 1.81 16 46 H 0.37 19.89 7.58 -92.71 -0.70 19.18 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -81.32 401.85 4.45 -76.87 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.32 Total: 30.40 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 6.86 Total: -15.61 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -3.08 Total: -115.14 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.82 Total: -39.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 15 Polarization: 16.22 SS G_CDS: -0.21 Total: 16.01 kcal Total: -81.32 4.45 -76.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.981 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds