Wall clock time and date at job start Tue Mar 31 2020 20:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46801 * 2 1 4 4 N 1.46498 * 109.47441 * 120.00112 * 2 1 3 5 5 C 1.36939 * 119.99708 * 275.00012 * 4 2 1 6 6 H 1.08002 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99927 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00227 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 120.00003 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47066 * 89.99958 * 9 7 5 11 11 H 1.48499 * 109.47001 * 210.00099 * 9 7 5 12 12 H 1.48502 * 109.46947 * 330.00175 * 9 7 5 13 13 C 1.53002 * 109.47006 * 240.00062 * 2 1 3 14 14 H 1.09001 * 109.47054 * 174.99228 * 13 2 1 15 15 C 1.52995 * 109.47272 * 294.99900 * 13 2 1 16 16 N 1.46501 * 109.47041 * 54.99854 * 13 2 1 17 17 C 1.34779 * 120.00008 * 155.00013 * 16 13 2 18 18 O 1.21550 * 119.99966 * 359.97438 * 17 16 13 19 19 C 1.47848 * 120.00150 * 179.97438 * 17 16 13 20 20 C 1.39575 * 120.14487 * 180.02562 * 19 17 16 21 21 C 1.37955 * 119.85263 * 180.27853 * 20 19 17 22 22 C 1.38361 * 120.14138 * 359.49245 * 21 20 19 23 23 P 1.81399 * 119.85194 * 180.25969 * 22 21 20 24 24 C 1.82300 * 109.47208 * 330.24805 * 23 22 21 25 25 C 1.82302 * 109.47395 * 90.24985 * 23 22 21 26 26 O 1.48004 * 109.47291 * 210.25154 * 23 22 21 27 27 C 1.38356 * 120.29644 * 0.50649 * 22 21 20 28 28 C 1.37958 * 120.14423 * 359.75425 * 27 22 21 29 29 H 1.09003 * 109.47237 * 300.00049 * 1 2 3 30 30 H 1.08999 * 109.47593 * 60.00107 * 1 2 3 31 31 H 1.09004 * 109.47317 * 180.02562 * 1 2 3 32 32 H 0.96992 * 120.00476 * 95.00019 * 4 2 1 33 33 H 0.97003 * 120.00555 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47209 * 59.99539 * 15 13 2 35 35 H 1.08998 * 109.47246 * 179.97438 * 15 13 2 36 36 H 1.09006 * 109.47072 * 300.00007 * 15 13 2 37 37 H 0.96996 * 120.00391 * 335.00289 * 16 13 2 38 38 H 1.08002 * 120.07104 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.92975 * 179.72529 * 21 20 19 40 40 H 1.09001 * 109.46893 * 60.00398 * 24 23 22 41 41 H 1.09006 * 109.47240 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.47397 * 300.00120 * 24 23 22 43 43 H 1.08999 * 109.46875 * 59.99838 * 25 23 22 44 44 H 1.09006 * 109.46882 * 180.02562 * 25 23 22 45 45 H 1.08996 * 109.46837 * 299.99796 * 25 23 22 46 46 H 1.08006 * 119.93372 * 179.76996 * 27 22 21 47 47 H 1.07997 * 120.07488 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0406 2.4241 7 6 2.6124 -0.6616 3.5089 8 7 2.7377 -0.0052 4.6428 9 14 3.0567 -2.4741 3.4250 10 1 4.4893 -2.6162 3.0605 11 1 2.8178 -3.1041 4.7484 12 1 2.2163 -3.1428 2.3994 13 6 2.0399 -0.7212 -1.2493 14 1 3.1262 -0.6442 -1.2953 15 6 1.6352 -2.1954 -1.1880 16 7 1.4557 -0.1036 -2.4424 17 6 2.0911 -0.1937 -3.6276 18 8 3.1490 -0.7870 -3.7065 19 6 1.5012 0.4291 -4.8318 20 6 2.1564 0.3371 -6.0608 21 6 1.6034 0.9254 -7.1795 22 6 0.3970 1.5964 -7.0870 23 15 -0.3264 2.3611 -8.5644 24 6 1.0060 2.8684 -9.7004 25 6 -1.4131 1.1596 -9.4003 26 8 -1.1162 3.5486 -8.1688 27 6 -0.2576 1.6912 -5.8718 28 6 0.2871 1.1120 -4.7444 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6317 1.1526 33 1 3.0617 -0.4622 5.4346 34 1 0.5489 -2.2724 -1.1420 35 1 1.9981 -2.7091 -2.0782 36 1 2.0699 -2.6550 -0.3003 37 1 0.6117 0.3702 -2.3794 38 1 3.0966 -0.1892 -6.1349 39 1 2.1115 0.8588 -8.1301 40 1 1.5876 1.9938 -9.9918 41 1 0.5712 3.3274 -10.5884 42 1 1.6557 3.5868 -9.2006 43 1 -2.2098 0.8563 -8.7211 44 1 -1.8475 1.6190 -10.2883 45 1 -0.8315 0.2850 -9.6917 46 1 -1.1973 2.2196 -5.8056 47 1 -0.2247 1.1870 -3.7963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329201294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:51 Heat of formation + Delta-G solvation = -79.727498 kcal Electronic energy + Delta-G solvation = -26304.259453 eV Core-core repulsion = 22565.313183 eV Total energy + Delta-G solvation = -3738.946270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50126 -39.60408 -38.45528 -35.79380 -34.01371 -33.84833 -32.57748 -32.02652 -31.03383 -30.08745 -29.62335 -28.45088 -26.19743 -25.59038 -24.22454 -23.61104 -21.70467 -20.88278 -20.11204 -19.14304 -17.89295 -17.26041 -16.74685 -16.44112 -16.14204 -15.92421 -15.70423 -15.62525 -15.54226 -15.02755 -14.71048 -14.59745 -14.47046 -14.29813 -14.13249 -14.02558 -13.88311 -13.72182 -13.63127 -13.27589 -13.17860 -12.99336 -12.90148 -12.79907 -12.71503 -12.58963 -12.21776 -12.20137 -11.99564 -11.80659 -11.66427 -11.20003 -11.02842 -10.69786 -10.59461 -10.45421 -10.16371 -10.12365 -9.37626 -8.03500 -5.37627 -0.56578 0.23548 0.75020 1.35209 1.38761 1.45049 1.59187 1.93299 2.46197 2.61985 3.27689 3.48268 3.58661 3.62325 3.78628 3.80101 3.82736 3.96999 3.98605 4.12810 4.19002 4.21184 4.23692 4.29731 4.50507 4.53357 4.58954 4.61528 4.70563 4.77281 4.86327 4.87362 4.92389 5.00681 5.07612 5.09300 5.14984 5.18252 5.19219 5.24487 5.35313 5.56854 5.74846 5.76325 6.19611 6.38154 6.73190 7.02208 7.06315 7.80101 7.98371 9.17542 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.002048 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.109471 B =13671.348036 C =14074.683812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.049 0.951 4 N -0.747 5.747 5 C -0.226 4.226 6 H 0.061 0.939 7 C -0.062 4.062 8 N -0.981 5.981 9 Si 0.946 3.054 10 H -0.283 1.283 11 H -0.295 1.295 12 H -0.249 1.249 13 C 0.144 3.856 14 H 0.065 0.935 15 C -0.156 4.156 16 N -0.699 5.699 17 C 0.549 3.451 18 O -0.576 6.576 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.080 4.080 22 C -0.706 4.706 23 P 2.624 2.376 24 C -0.832 4.832 25 C -0.828 4.828 26 O -1.048 7.048 27 C -0.055 4.055 28 C -0.106 4.106 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.366 0.634 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.131 0.869 39 H 0.167 0.833 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.173 0.827 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 1.468 -34.321 35.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.060 3.940 3 H 0.067 0.933 4 N -0.393 5.393 5 C -0.357 4.357 6 H 0.079 0.921 7 C -0.254 4.254 8 N -0.631 5.631 9 Si 0.773 3.227 10 H -0.209 1.209 11 H -0.221 1.221 12 H -0.174 1.174 13 C 0.038 3.962 14 H 0.083 0.917 15 C -0.215 4.215 16 N -0.352 5.352 17 C 0.337 3.663 18 O -0.457 6.457 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.098 4.098 22 C -0.695 4.695 23 P 2.691 2.309 24 C -0.877 4.877 25 C -0.872 4.872 26 O -1.149 7.149 27 C -0.073 4.073 28 C -0.125 4.125 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.202 0.798 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.149 0.851 39 H 0.185 0.815 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.190 0.810 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.411 0.499 -34.441 35.457 hybrid contribution 1.077 -1.710 0.758 2.159 sum -7.334 -1.211 -33.683 34.494 Atomic orbital electron populations 1.22367 0.96026 1.02227 1.01478 1.20501 0.94201 0.95035 0.84266 0.93283 1.42782 1.80262 1.09603 1.06641 1.18993 1.35129 0.94547 0.87073 0.92074 1.25435 1.02377 1.02243 0.95305 1.69864 1.54526 1.37601 1.01144 0.85557 0.78538 0.81349 0.77243 1.20910 1.22135 1.17382 1.21015 0.97921 0.93375 0.83875 0.91662 1.22121 1.02973 0.94846 1.01527 1.45940 1.26126 1.56036 1.07147 1.18761 0.83998 0.79435 0.84062 1.90756 1.23977 1.44764 1.86199 1.20185 0.97250 1.00997 0.93473 1.21519 0.99970 0.98242 0.92032 1.21378 0.94452 0.94441 0.99515 1.33673 1.04857 1.10874 1.20128 0.87879 0.47721 0.49969 0.45373 1.32002 1.23739 1.11852 1.20105 1.31965 1.18986 1.20640 1.15645 1.95045 1.75603 1.58030 1.86180 1.21382 1.00419 0.94688 0.90765 1.21812 0.93816 0.95740 1.01102 0.93822 0.90326 0.92047 0.79843 0.93370 0.90224 0.92587 0.92407 0.74616 0.85122 0.81547 0.87069 0.86586 0.87198 0.87040 0.86684 0.87613 0.80968 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.01 71.98 0.65 -4.03 16 2 C 0.17 5.96 2.93 44.99 0.13 6.09 16 3 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 4 N -0.75 -33.70 4.84 -322.95 -1.56 -35.26 16 5 C -0.23 -12.62 10.41 84.03 0.87 -11.75 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 7 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 8 N -0.98 -62.53 13.97 21.65 0.30 -62.23 16 9 Si 0.95 45.31 27.74 68.60 1.90 47.21 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.25 -10.66 6.52 99.48 0.65 -10.02 16 13 C 0.14 4.48 2.62 44.99 0.12 4.60 16 14 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 15 C -0.16 -4.55 9.00 71.98 0.65 -3.90 16 16 N -0.70 -17.35 4.94 -445.40 -2.20 -19.55 16 17 C 0.55 15.17 7.74 86.79 0.67 15.84 16 18 O -0.58 -20.49 16.01 -3.87 -0.06 -20.55 16 19 C -0.12 -2.46 5.87 -20.09 -0.12 -2.58 16 20 C -0.10 -1.85 9.60 22.53 0.22 -1.64 16 21 C -0.08 -0.91 9.56 22.23 0.21 -0.69 16 22 C -0.71 -7.10 6.19 22.33 0.14 -6.96 16 23 P 2.62 15.37 5.23 -40.88 -0.21 15.16 16 24 C -0.83 -3.84 10.53 113.37 1.19 -2.65 16 25 C -0.83 -3.92 11.06 113.37 1.25 -2.66 16 26 O -1.05 -15.93 18.40 -41.20 -0.76 -16.69 16 27 C -0.06 -0.68 9.67 22.23 0.22 -0.46 16 28 C -0.11 -1.65 9.54 22.53 0.21 -1.43 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.57 6.29 -2.39 -0.02 1.56 16 31 H 0.06 1.70 6.57 -2.38 -0.02 1.68 16 32 H 0.37 16.02 3.63 -92.71 -0.34 15.68 16 33 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.08 2.00 6.57 -2.39 -0.02 1.99 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.82 6.29 -2.38 -0.02 1.81 16 37 H 0.41 7.64 4.61 -92.71 -0.43 7.21 16 38 H 0.13 2.61 7.65 -2.91 -0.02 2.59 16 39 H 0.17 0.48 7.25 -2.91 -0.02 0.46 16 40 H 0.11 0.04 7.64 -2.39 -0.02 0.02 16 41 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.17 1.32 8.03 -2.91 -0.02 1.29 16 47 H 0.15 1.64 6.41 -2.91 -0.02 1.62 16 Total: -1.00 -84.06 391.04 4.46 -79.60 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.17 Total: 27.69 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 6.89 Total: -15.37 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -3.46 Total: -117.04 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.82 Total: -37.24 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 15 Polarization: 15.37 SS G_CDS: -0.21 Total: 15.16 kcal Total: -84.06 4.46 -79.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329201294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.131 kcal (2) G-P(sol) polarization free energy of solvation -84.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds