Wall clock time and date at job start Tue Mar 31 2020 21:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47008 * 2 1 4 4 C 1.52996 * 109.47590 * 239.99907 * 2 1 3 5 5 N 1.46495 * 109.47349 * 184.99932 * 4 2 1 6 6 C 1.34777 * 120.00213 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00187 * 180.02562 * 6 5 4 9 9 H 1.08996 * 115.55089 * 34.32923 * 8 6 5 10 10 C 1.53007 * 117.49551 * 248.62236 * 8 6 5 11 11 C 1.53006 * 117.49541 * 180.02562 * 8 6 5 12 12 H 1.08997 * 117.50276 * 359.97438 * 11 8 6 13 13 C 1.50700 * 117.49428 * 215.00092 * 11 8 6 14 14 C 1.38422 * 120.02626 * 307.43530 * 13 11 8 15 15 F 1.35099 * 120.01205 * 359.97438 * 14 13 11 16 16 C 1.38466 * 119.97454 * 179.74901 * 14 13 11 17 17 C 1.38204 * 120.02601 * 0.50438 * 16 14 13 18 18 C 1.38205 * 120.05180 * 359.77280 * 17 16 14 19 19 C 1.38417 * 120.02393 * 127.71377 * 13 11 8 20 20 F 1.35098 * 120.01363 * 359.97139 * 19 13 11 21 21 N 1.46504 * 109.47124 * 119.99240 * 2 1 3 22 22 C 1.46501 * 119.99647 * 60.00657 * 21 2 1 23 23 C 1.36933 * 120.00386 * 240.00221 * 21 2 1 24 24 H 1.07998 * 119.99903 * 19.66892 * 23 21 2 25 25 C 1.38811 * 120.00089 * 199.66786 * 23 21 2 26 26 N 1.31624 * 119.99950 * 10.41739 * 25 23 21 27 27 Si 1.86797 * 120.00133 * 190.41636 * 25 23 21 28 28 H 1.48509 * 109.46876 * 60.00161 * 27 25 23 29 29 H 1.48494 * 109.47476 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47320 * 300.00306 * 27 25 23 31 31 H 1.08991 * 109.47384 * 300.00512 * 1 2 3 32 32 H 1.09001 * 109.46643 * 60.00524 * 1 2 3 33 33 H 1.08997 * 109.46993 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47388 * 64.99501 * 4 2 1 35 35 H 1.09001 * 109.46639 * 304.99942 * 4 2 1 36 36 H 0.97001 * 120.00341 * 0.02562 * 5 4 2 37 37 H 1.08998 * 117.49441 * 359.97438 * 10 8 6 38 38 H 1.08996 * 117.49514 * 145.02069 * 10 8 6 39 39 H 1.08005 * 119.98945 * 180.22992 * 16 14 13 40 40 H 1.08007 * 119.97787 * 179.74836 * 17 16 14 41 41 H 1.08002 * 119.99019 * 179.97438 * 18 17 16 42 42 H 1.08998 * 109.47264 * 94.98524 * 22 21 2 43 43 H 1.08996 * 109.47228 * 214.98940 * 22 21 2 44 44 H 1.09005 * 109.46996 * 334.98907 * 22 21 2 45 45 H 0.97001 * 119.99765 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1904 6 6 4.1731 -1.4291 -2.1905 7 8 3.5701 -1.8841 -3.1393 8 6 5.6750 -1.5377 -2.1298 9 1 6.0968 -1.6724 -1.1338 10 6 6.4840 -0.7150 -3.1347 11 6 6.3807 -2.2325 -3.2961 12 1 5.7587 -2.6115 -4.1070 13 6 7.6057 -3.0513 -2.9798 14 6 8.6447 -2.4922 -2.2560 15 9 8.5613 -1.2118 -1.8332 16 6 9.7675 -3.2471 -1.9615 17 6 9.8556 -4.5551 -2.3989 18 6 8.8213 -5.1128 -3.1266 19 6 7.6952 -4.3613 -3.4178 20 9 6.6841 -4.9068 -4.1286 21 7 2.0183 -0.6905 1.1963 22 6 1.6645 -2.0931 1.4282 23 6 2.8056 -0.0249 2.0976 24 1 2.8123 1.0549 2.1148 25 6 3.5949 -0.7382 2.9893 26 7 3.7477 -2.0369 2.8397 27 14 4.4401 0.1451 4.4016 28 1 3.4181 0.7907 5.2642 29 1 5.2171 -0.8337 5.2036 30 1 5.3566 1.1807 3.8603 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.7517 -0.1584 -2.1370 35 1 1.6055 -1.7198 -1.2950 36 1 3.9824 -0.4627 -0.4315 37 1 5.9298 -0.0956 -3.8399 38 1 7.4381 -0.3082 -2.7998 39 1 10.5767 -2.8122 -1.3936 40 1 10.7335 -5.1420 -2.1722 41 1 8.8914 -6.1349 -3.4682 42 1 2.4595 -2.7357 1.0499 43 1 1.5370 -2.2637 2.4971 44 1 0.7336 -2.3234 0.9099 45 1 4.2996 -2.5352 3.4626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329543212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:40 Heat of formation + Delta-G solvation = -59.738025 kcal Electronic energy + Delta-G solvation = -29648.712436 eV Core-core repulsion = 25303.550611 eV Total energy + Delta-G solvation = -4345.161825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.30402 -50.05673 -41.13955 -39.87972 -38.59652 -37.39967 -35.38807 -33.76976 -31.88657 -31.30080 -31.08659 -28.03928 -27.79445 -25.37403 -24.91757 -24.30479 -23.80206 -22.26239 -21.23718 -20.68774 -19.20703 -18.90291 -18.76109 -17.82917 -17.41632 -17.12408 -16.93939 -16.80605 -16.60572 -16.39366 -16.23926 -15.76614 -15.53479 -15.41455 -15.05562 -14.67577 -14.46750 -14.07860 -13.88256 -13.80946 -13.58435 -13.27935 -13.23189 -13.16702 -12.92139 -12.79863 -12.59134 -12.53127 -12.28262 -12.14101 -12.10210 -11.76527 -11.73792 -11.65467 -11.51305 -10.93954 -10.59801 -9.97423 -9.78816 -9.74454 -8.81427 -7.76755 -5.24054 -0.12191 -0.05785 1.45858 1.49785 1.52096 1.57378 2.18497 2.34714 2.53275 2.80989 2.84041 3.25917 3.37090 3.37629 3.49219 3.63702 3.69004 3.80811 3.83087 4.02397 4.10640 4.15861 4.21891 4.37358 4.59007 4.60916 4.67930 4.76083 4.78524 4.82229 4.83510 4.86306 4.90837 5.03763 5.07133 5.14626 5.18279 5.25264 5.32337 5.45943 5.59579 5.68068 5.75079 5.76466 6.34384 6.61911 7.18261 7.23457 7.89868 8.34549 9.25081 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.003584 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.931221 B = 7810.821638 C = 9187.696273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.113 3.887 5 N -0.696 5.696 6 C 0.537 3.463 7 O -0.591 6.591 8 C -0.181 4.181 9 H 0.118 0.882 10 C -0.136 4.136 11 C -0.091 4.091 12 H 0.113 0.887 13 C -0.140 4.140 14 C 0.112 3.888 15 F -0.128 7.128 16 C -0.154 4.154 17 C -0.052 4.052 18 C -0.154 4.154 19 C 0.109 3.891 20 F -0.143 7.143 21 N -0.604 5.604 22 C 0.186 3.814 23 C -0.259 4.259 24 H 0.077 0.923 25 C -0.045 4.045 26 N -0.935 5.935 27 Si 0.962 3.038 28 H -0.284 1.284 29 H -0.301 1.301 30 H -0.274 1.274 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.410 0.590 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.170 0.830 40 H 0.187 0.813 41 H 0.169 0.831 42 H -0.005 1.005 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.908 -1.500 -11.596 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.094 0.906 4 C -0.013 4.013 5 N -0.345 5.345 6 C 0.324 3.676 7 O -0.473 6.473 8 C -0.202 4.202 9 H 0.136 0.864 10 C -0.173 4.173 11 C -0.110 4.110 12 H 0.131 0.869 13 C -0.142 4.142 14 C 0.093 3.907 15 F -0.106 7.106 16 C -0.172 4.172 17 C -0.070 4.070 18 C -0.173 4.173 19 C 0.089 3.911 20 F -0.122 7.122 21 N -0.328 5.328 22 C 0.041 3.959 23 C -0.389 4.389 24 H 0.094 0.906 25 C -0.240 4.240 26 N -0.582 5.582 27 Si 0.791 3.209 28 H -0.210 1.210 29 H -0.228 1.228 30 H -0.199 1.199 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.247 0.753 37 H 0.125 0.875 38 H 0.167 0.833 39 H 0.188 0.812 40 H 0.204 0.796 41 H 0.186 0.814 42 H 0.013 0.987 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.483 -1.873 -12.134 17.509 hybrid contribution -0.091 0.288 1.311 1.346 sum 12.392 -1.585 -10.823 16.529 Atomic orbital electron populations 1.22064 0.95022 1.01620 1.02124 1.20833 0.94317 0.95562 0.84270 0.90640 1.21909 0.79708 1.00129 0.99543 1.45830 1.08321 1.57576 1.22739 1.19873 0.88943 0.76908 0.81859 1.90603 1.70876 1.50416 1.35451 1.22171 0.90899 1.09731 0.97391 0.86401 1.23849 1.02953 0.91838 0.98649 1.20737 0.95804 0.95091 0.99381 0.86901 1.19230 0.96265 0.94686 1.04015 1.17460 0.95479 0.79802 0.97991 1.91301 1.96123 1.35359 1.87832 1.21624 0.97430 0.95494 1.02670 1.21364 0.98859 0.93595 0.93182 1.21598 0.92098 1.02133 1.01453 1.17554 0.87035 0.90925 0.95554 1.91497 1.59278 1.85472 1.75904 1.44107 1.57863 1.09322 1.21471 1.20406 0.93665 0.84546 0.97316 1.19536 1.17194 0.91154 1.10997 0.90567 1.25609 0.99583 0.96367 1.02478 1.70277 1.42559 1.07240 1.38133 0.85421 0.78254 0.77365 0.79828 1.21022 1.22765 1.19918 0.92622 0.90380 0.93453 0.91062 0.94270 0.75343 0.87482 0.83345 0.81211 0.79564 0.81379 0.98686 0.96174 0.96263 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.18 71.98 0.66 -4.05 16 2 C 0.16 5.93 2.87 44.99 0.13 6.06 16 3 H 0.08 2.75 7.84 -2.38 -0.02 2.73 16 4 C 0.11 4.29 4.97 86.38 0.43 4.72 16 5 N -0.70 -27.95 5.39 -463.07 -2.49 -30.44 16 6 C 0.54 21.66 7.61 87.66 0.67 22.33 16 7 O -0.59 -26.80 16.26 -3.04 -0.05 -26.85 16 8 C -0.18 -6.19 5.49 -11.53 -0.06 -6.26 16 9 H 0.12 4.21 8.00 -2.39 -0.02 4.19 16 10 C -0.14 -3.73 9.37 30.58 0.29 -3.45 16 11 C -0.09 -2.83 5.38 -11.55 -0.06 -2.90 16 12 H 0.11 3.90 7.25 -2.39 -0.02 3.88 16 13 C -0.14 -3.77 5.65 -19.78 -0.11 -3.88 16 14 C 0.11 2.57 7.07 22.37 0.16 2.73 16 15 F -0.13 -3.11 12.98 44.97 0.58 -2.52 16 16 C -0.15 -2.41 10.02 22.32 0.22 -2.18 16 17 C -0.05 -0.63 10.04 22.25 0.22 -0.41 16 18 C -0.15 -2.53 10.03 22.32 0.22 -2.31 16 19 C 0.11 2.70 7.25 22.37 0.16 2.86 16 20 F -0.14 -4.15 16.52 44.97 0.74 -3.41 16 21 N -0.60 -28.26 2.29 -702.78 -1.61 -29.87 16 22 C 0.19 9.20 8.09 127.77 1.03 10.23 16 23 C -0.26 -13.14 9.38 84.03 0.79 -12.35 16 24 H 0.08 3.70 7.78 -2.91 -0.02 3.68 16 25 C -0.05 -2.39 5.16 84.86 0.44 -1.95 16 26 N -0.94 -53.19 10.38 21.65 0.22 -52.96 16 27 Si 0.96 43.23 29.57 68.60 2.03 45.26 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 29 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 30 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.54 6.66 -2.39 -0.02 1.52 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 35 H 0.04 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.41 17.30 7.89 -92.71 -0.73 16.56 16 37 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.15 3.58 5.02 -2.39 -0.01 3.57 16 39 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 42 H -0.01 -0.29 7.45 -2.39 -0.02 -0.31 16 43 H 0.02 1.07 7.02 -2.39 -0.02 1.05 16 44 H 0.02 0.84 6.44 -2.38 -0.02 0.82 16 45 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -67.16 376.50 4.91 -62.26 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.30 Total: 29.33 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.19 Total: 9.21 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.88 Total: -113.27 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 1.33 Total: -5.93 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.16 4.91 -62.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329543212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.517 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds