Wall clock time and date at job start Tue Mar 31 2020 21:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46827 * 2 1 4 4 C 1.53005 * 109.47174 * 119.99467 * 2 1 3 5 5 N 1.46493 * 109.47231 * 174.99787 * 4 2 1 6 6 C 1.34772 * 120.00297 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00138 * 180.02562 * 6 5 4 9 9 H 1.09000 * 115.54816 * 34.33606 * 8 6 5 10 10 C 1.53000 * 117.50075 * 248.62519 * 8 6 5 11 11 C 1.52997 * 60.00258 * 252.51113 * 10 8 6 12 12 H 1.09000 * 117.49754 * 107.48798 * 11 10 8 13 13 C 1.50694 * 117.50302 * 252.50897 * 11 10 8 14 14 C 1.38429 * 120.02369 * 17.22840 * 13 11 10 15 15 F 1.35105 * 120.00916 * 359.97209 * 14 13 11 16 16 C 1.38467 * 119.97284 * 179.74543 * 14 13 11 17 17 C 1.38203 * 120.02896 * 0.50830 * 16 14 13 18 18 C 1.38211 * 120.05050 * 359.76388 * 17 16 14 19 19 C 1.38419 * 120.03037 * 197.49980 * 13 11 10 20 20 F 1.35096 * 120.01249 * 359.97438 * 19 13 11 21 21 N 1.46493 * 109.47033 * 239.99812 * 2 1 3 22 22 C 1.46505 * 120.00174 * 300.27422 * 21 2 1 23 23 C 1.36942 * 119.99973 * 120.00283 * 21 2 1 24 24 H 1.07993 * 119.99891 * 338.26810 * 23 21 2 25 25 C 1.38816 * 119.99706 * 158.27582 * 23 21 2 26 26 N 1.31617 * 120.00100 * 344.71577 * 25 23 21 27 27 Si 1.86802 * 119.99716 * 164.72013 * 25 23 21 28 28 H 1.48504 * 109.47126 * 59.99387 * 27 25 23 29 29 H 1.48491 * 109.47159 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47202 * 300.00084 * 27 25 23 31 31 H 1.09004 * 109.47314 * 300.00029 * 1 2 3 32 32 H 1.08998 * 109.47415 * 60.00038 * 1 2 3 33 33 H 1.09002 * 109.47321 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47256 * 295.00809 * 4 2 1 35 35 H 1.09007 * 109.46805 * 55.00064 * 4 2 1 36 36 H 0.97005 * 119.99742 * 0.02562 * 5 4 2 37 37 H 1.09001 * 117.50125 * 0.02562 * 10 8 6 38 38 H 1.09002 * 117.50011 * 145.02166 * 10 8 6 39 39 H 1.08008 * 119.98387 * 180.22616 * 16 14 13 40 40 H 1.08001 * 119.97752 * 179.74867 * 17 16 14 41 41 H 1.08000 * 119.98977 * 179.97438 * 18 17 16 42 42 H 1.09008 * 109.47091 * 264.92415 * 22 21 2 43 43 H 1.09001 * 109.46966 * 24.91942 * 22 21 2 44 44 H 1.08993 * 109.46966 * 144.92102 * 22 21 2 45 45 H 0.96998 * 119.99615 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1731 -1.4281 2.1913 7 8 3.5700 -1.8830 3.1401 8 6 5.6750 -1.5358 2.1311 9 1 6.1879 -0.6975 1.6597 10 6 6.2763 -2.9297 1.9411 11 6 6.3808 -2.2301 3.2977 12 1 5.7587 -2.6090 4.1086 13 6 7.7320 -1.7030 3.7066 14 6 8.7249 -1.5316 2.7574 15 9 8.4831 -1.8375 1.4638 16 6 9.9644 -1.0422 3.1335 17 6 10.2139 -0.7348 4.4576 18 6 9.2252 -0.9107 5.4071 19 6 7.9831 -1.3951 5.0326 20 9 7.0167 -1.5665 5.9608 21 7 2.0183 -0.6906 -1.1961 22 6 1.6594 -2.0915 -1.4310 23 6 2.8056 -0.0251 -2.0975 24 1 2.7873 1.0539 -2.1372 25 6 3.6271 -0.7377 -2.9604 26 7 3.8842 -2.0070 -2.7261 27 14 4.3676 0.1052 -4.4539 28 1 5.2129 1.2434 -4.0116 29 1 5.2006 -0.8657 -5.2079 30 1 3.2786 0.6084 -5.3290 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1582 2.1370 35 1 1.6053 -1.7198 1.2953 36 1 3.9824 -0.4622 0.4319 37 1 5.5856 -3.7690 1.8591 38 1 7.1850 -3.0088 1.3443 39 1 10.7380 -0.9050 2.3924 40 1 11.1823 -0.3569 4.7506 41 1 9.4213 -0.6706 6.4416 42 1 2.4518 -2.7378 -1.0533 43 1 0.7273 -2.3193 -0.9139 44 1 1.5322 -2.2595 -2.5003 45 1 4.4579 -2.5049 -3.3293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329543213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:45 Heat of formation + Delta-G solvation = -45.728997 kcal Electronic energy + Delta-G solvation = -29590.773036 eV Core-core repulsion = 25246.218687 eV Total energy + Delta-G solvation = -4344.554348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.36468 -49.12423 -39.74432 -38.89092 -37.01385 -36.00977 -33.59857 -32.00420 -30.98798 -30.54667 -29.32392 -26.35988 -26.01606 -24.25867 -23.42320 -23.02791 -22.68113 -21.18650 -19.61740 -19.10717 -18.31964 -17.71426 -16.91981 -16.63010 -16.34462 -15.98767 -15.77749 -15.45698 -15.41825 -15.18786 -14.84451 -14.48670 -14.20008 -13.85971 -13.73948 -13.20773 -12.89934 -12.78169 -12.61356 -12.41724 -12.21942 -12.20002 -12.04387 -11.96611 -11.61153 -11.14134 -11.05730 -10.78651 -10.75763 -10.67462 -10.43315 -10.37076 -10.29618 -9.86466 -9.78948 -9.36365 -9.01247 -8.82231 -8.59237 -8.32329 -6.82174 -5.76545 -3.22721 0.67438 0.70588 2.91213 3.12044 3.34906 3.42085 3.42791 3.65310 3.71345 4.06099 4.16856 4.31410 4.44748 4.46201 4.52031 4.83631 4.93193 5.07641 5.23012 5.36061 5.40138 5.45964 5.49947 5.59011 5.61938 5.68815 5.76866 5.85343 5.95113 5.98200 6.09765 6.13962 6.16269 6.26606 6.37019 6.40342 6.50108 6.69544 6.80376 6.90509 7.17656 7.36647 7.71732 7.77320 8.26146 8.34088 8.85059 9.18585 9.82378 10.31978 11.26614 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.003371 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.569388 B = 8304.211275 C = 9891.876202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.108 3.892 5 N -0.693 5.693 6 C 0.540 3.460 7 O -0.563 6.563 8 C -0.161 4.161 9 H 0.121 0.879 10 C -0.150 4.150 11 C -0.101 4.101 12 H 0.133 0.867 13 C -0.115 4.115 14 C 0.129 3.871 15 F -0.117 7.117 16 C -0.161 4.161 17 C -0.070 4.070 18 C -0.163 4.163 19 C 0.135 3.865 20 F -0.126 7.126 21 N -0.593 5.593 22 C 0.162 3.838 23 C -0.265 4.265 24 H 0.067 0.933 25 C 0.008 3.992 26 N -0.898 5.898 27 Si 0.900 3.100 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.416 0.584 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.030 0.970 43 H 0.000 1.000 44 H 0.039 0.961 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.218 1.764 13.372 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.018 4.018 5 N -0.343 5.343 6 C 0.326 3.674 7 O -0.444 6.444 8 C -0.182 4.182 9 H 0.139 0.861 10 C -0.187 4.187 11 C -0.119 4.119 12 H 0.150 0.850 13 C -0.116 4.116 14 C 0.110 3.890 15 F -0.096 7.096 16 C -0.180 4.180 17 C -0.088 4.088 18 C -0.182 4.182 19 C 0.116 3.884 20 F -0.104 7.104 21 N -0.316 5.316 22 C 0.018 3.982 23 C -0.394 4.394 24 H 0.085 0.915 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.730 3.270 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.122 0.878 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.057 0.943 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.817 1.304 13.875 17.642 hybrid contribution 0.399 0.479 -1.383 1.517 sum 11.216 1.783 12.492 16.883 Atomic orbital electron populations 1.22174 0.97514 1.01443 1.00641 1.20639 0.92576 0.95873 0.85975 0.91384 1.21946 0.80054 1.00933 0.98905 1.45741 1.08001 1.57716 1.22805 1.19406 0.87722 0.77853 0.82464 1.90630 1.70001 1.49434 1.34288 1.22228 0.93446 0.99375 1.03185 0.86073 1.23669 1.04196 0.93957 0.96841 1.20869 0.92865 1.04076 0.94107 0.84960 1.19273 0.95871 1.04362 0.92128 1.17260 0.93673 0.99660 0.78417 1.91403 1.94254 1.89959 1.33955 1.21229 0.96108 1.02706 0.97965 1.20821 0.99178 0.97356 0.91406 1.21203 0.91997 1.03317 1.01681 1.17152 0.86347 0.99840 0.85081 1.91545 1.61958 1.92806 1.64097 1.43923 1.57622 1.09773 1.20269 1.20747 0.94167 0.84664 0.98651 1.19154 1.17282 0.90908 1.12061 0.91540 1.24944 0.97796 0.96219 1.00167 1.70078 1.38781 1.08223 1.37072 0.86417 0.78722 0.78468 0.83372 1.21005 1.21713 1.21225 0.93575 0.92423 0.92964 0.92944 0.92471 0.74689 0.87800 0.85131 0.83872 0.83949 0.83974 0.95138 0.98199 0.94255 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.18 37.16 0.34 -2.31 16 2 C 0.16 3.06 2.87 -67.93 -0.19 2.87 16 3 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 4 C 0.11 2.07 4.98 -4.04 -0.02 2.05 16 5 N -0.69 -13.73 5.39 -60.30 -0.32 -14.06 16 6 C 0.54 10.60 7.61 -10.99 -0.08 10.51 16 7 O -0.56 -12.40 16.26 5.55 0.09 -12.31 16 8 C -0.16 -2.68 5.46 -91.77 -0.50 -3.18 16 9 H 0.12 1.91 7.92 -51.93 -0.41 1.50 16 10 C -0.15 -2.30 9.37 -26.73 -0.25 -2.55 16 11 C -0.10 -1.51 5.39 -91.77 -0.49 -2.00 16 12 H 0.13 2.14 7.23 -51.93 -0.38 1.77 16 13 C -0.11 -1.47 5.65 -104.49 -0.59 -2.06 16 14 C 0.13 1.51 7.05 -39.43 -0.28 1.23 16 15 F -0.12 -1.53 12.93 2.25 0.03 -1.50 16 16 C -0.16 -1.41 10.02 -39.51 -0.40 -1.80 16 17 C -0.07 -0.50 10.04 -39.60 -0.40 -0.90 16 18 C -0.16 -1.39 10.03 -39.50 -0.40 -1.78 16 19 C 0.14 1.58 7.25 -39.43 -0.29 1.29 16 20 F -0.13 -1.65 16.51 2.25 0.04 -1.61 16 21 N -0.59 -13.77 2.29 -173.48 -0.40 -14.17 16 22 C 0.16 3.88 8.13 59.85 0.49 4.36 16 23 C -0.26 -6.73 9.32 -15.06 -0.14 -6.87 16 24 H 0.07 1.66 7.82 -52.49 -0.41 1.25 16 25 C 0.01 0.21 5.05 -17.43 -0.09 0.12 16 26 N -0.90 -24.58 10.78 55.49 0.60 -23.99 16 27 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.88 6.65 -51.93 -0.35 0.54 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.17 7.84 -51.93 -0.41 0.77 16 36 H 0.42 8.68 7.89 -40.82 -0.32 8.36 16 37 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.13 1.88 5.10 -51.93 -0.26 1.62 16 39 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.03 0.80 7.38 -51.92 -0.38 0.42 16 43 H 0.00 -0.01 6.42 -51.93 -0.33 -0.34 16 44 H 0.04 1.01 7.31 -51.93 -0.38 0.63 16 45 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -29.63 376.93 -8.74 -38.37 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.14 Total: 8.72 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.29 Total: -1.02 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.12 Total: -52.21 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.63 -8.74 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329543213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.357 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds