Wall clock time and date at job start Tue Mar 31 2020 21:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46827 * 2 1 4 4 C 1.53005 * 109.47174 * 119.99467 * 2 1 3 5 5 N 1.46493 * 109.47231 * 174.99787 * 4 2 1 6 6 C 1.34772 * 120.00297 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00138 * 180.02562 * 6 5 4 9 9 H 1.09000 * 115.54816 * 34.33606 * 8 6 5 10 10 C 1.53000 * 117.50075 * 248.62519 * 8 6 5 11 11 C 1.52997 * 60.00258 * 252.51113 * 10 8 6 12 12 H 1.09000 * 117.49754 * 107.48798 * 11 10 8 13 13 C 1.50694 * 117.50302 * 252.50897 * 11 10 8 14 14 C 1.38429 * 120.02369 * 17.22840 * 13 11 10 15 15 F 1.35105 * 120.00916 * 359.97209 * 14 13 11 16 16 C 1.38467 * 119.97284 * 179.74543 * 14 13 11 17 17 C 1.38203 * 120.02896 * 0.50830 * 16 14 13 18 18 C 1.38211 * 120.05050 * 359.76388 * 17 16 14 19 19 C 1.38419 * 120.03037 * 197.49980 * 13 11 10 20 20 F 1.35096 * 120.01249 * 359.97438 * 19 13 11 21 21 N 1.46493 * 109.47033 * 239.99812 * 2 1 3 22 22 C 1.46505 * 120.00174 * 300.27422 * 21 2 1 23 23 C 1.36942 * 119.99973 * 120.00283 * 21 2 1 24 24 H 1.07993 * 119.99891 * 338.26810 * 23 21 2 25 25 C 1.38816 * 119.99706 * 158.27582 * 23 21 2 26 26 N 1.31617 * 120.00100 * 344.71577 * 25 23 21 27 27 Si 1.86802 * 119.99716 * 164.72013 * 25 23 21 28 28 H 1.48504 * 109.47126 * 59.99387 * 27 25 23 29 29 H 1.48491 * 109.47159 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47202 * 300.00084 * 27 25 23 31 31 H 1.09004 * 109.47314 * 300.00029 * 1 2 3 32 32 H 1.08998 * 109.47415 * 60.00038 * 1 2 3 33 33 H 1.09002 * 109.47321 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47256 * 295.00809 * 4 2 1 35 35 H 1.09007 * 109.46805 * 55.00064 * 4 2 1 36 36 H 0.97005 * 119.99742 * 0.02562 * 5 4 2 37 37 H 1.09001 * 117.50125 * 0.02562 * 10 8 6 38 38 H 1.09002 * 117.50011 * 145.02166 * 10 8 6 39 39 H 1.08008 * 119.98387 * 180.22616 * 16 14 13 40 40 H 1.08001 * 119.97752 * 179.74867 * 17 16 14 41 41 H 1.08000 * 119.98977 * 179.97438 * 18 17 16 42 42 H 1.09008 * 109.47091 * 264.92415 * 22 21 2 43 43 H 1.09001 * 109.46966 * 24.91942 * 22 21 2 44 44 H 1.08993 * 109.46966 * 144.92102 * 22 21 2 45 45 H 0.96998 * 119.99615 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1731 -1.4281 2.1913 7 8 3.5700 -1.8830 3.1401 8 6 5.6750 -1.5358 2.1311 9 1 6.1879 -0.6975 1.6597 10 6 6.2763 -2.9297 1.9411 11 6 6.3808 -2.2301 3.2977 12 1 5.7587 -2.6090 4.1086 13 6 7.7320 -1.7030 3.7066 14 6 8.7249 -1.5316 2.7574 15 9 8.4831 -1.8375 1.4638 16 6 9.9644 -1.0422 3.1335 17 6 10.2139 -0.7348 4.4576 18 6 9.2252 -0.9107 5.4071 19 6 7.9831 -1.3951 5.0326 20 9 7.0167 -1.5665 5.9608 21 7 2.0183 -0.6906 -1.1961 22 6 1.6594 -2.0915 -1.4310 23 6 2.8056 -0.0251 -2.0975 24 1 2.7873 1.0539 -2.1372 25 6 3.6271 -0.7377 -2.9604 26 7 3.8842 -2.0070 -2.7261 27 14 4.3676 0.1052 -4.4539 28 1 5.2129 1.2434 -4.0116 29 1 5.2006 -0.8657 -5.2079 30 1 3.2786 0.6084 -5.3290 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1582 2.1370 35 1 1.6053 -1.7198 1.2953 36 1 3.9824 -0.4622 0.4319 37 1 5.5856 -3.7690 1.8591 38 1 7.1850 -3.0088 1.3443 39 1 10.7380 -0.9050 2.3924 40 1 11.1823 -0.3569 4.7506 41 1 9.4213 -0.6706 6.4416 42 1 2.4518 -2.7378 -1.0533 43 1 0.7273 -2.3193 -0.9139 44 1 1.5322 -2.2595 -2.5003 45 1 4.4579 -2.5049 -3.3293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329543213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:44 Heat of formation + Delta-G solvation = -61.249728 kcal Electronic energy + Delta-G solvation = -29591.446065 eV Core-core repulsion = 25246.218687 eV Total energy + Delta-G solvation = -4345.227378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.28030 -50.03853 -41.13476 -39.87363 -38.58074 -37.39557 -35.36208 -33.76259 -31.87533 -31.28514 -31.10739 -28.00271 -27.79310 -25.37018 -24.92160 -24.31536 -23.78562 -22.23304 -21.23128 -20.68364 -19.18614 -18.84970 -18.77343 -17.80674 -17.41793 -17.06174 -16.91101 -16.82962 -16.59194 -16.38739 -16.21513 -15.78141 -15.52735 -15.41027 -15.07633 -14.61784 -14.46530 -14.09842 -13.90309 -13.69069 -13.64385 -13.27355 -13.24688 -13.18206 -12.90697 -12.83170 -12.57733 -12.51805 -12.29737 -12.14387 -12.10041 -11.77771 -11.73544 -11.64071 -11.49583 -10.94304 -10.58208 -9.96564 -9.77560 -9.73794 -8.77005 -7.76406 -5.24045 -0.11602 -0.04486 1.46490 1.49897 1.53047 1.58063 2.15014 2.38312 2.54327 2.84556 2.85053 3.25807 3.36771 3.39201 3.50190 3.63837 3.69735 3.82170 3.84298 4.02474 4.06007 4.15104 4.22851 4.38091 4.59491 4.61629 4.68710 4.75130 4.79784 4.82511 4.84475 4.86925 4.90516 5.05008 5.07352 5.15157 5.19808 5.25670 5.28423 5.45149 5.59809 5.70521 5.73988 5.76411 6.36076 6.62739 7.18925 7.23903 7.90592 8.36454 9.24961 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.003371 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.569388 B = 8304.211275 C = 9891.876202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.073 0.927 4 C 0.113 3.887 5 N -0.695 5.695 6 C 0.536 3.464 7 O -0.591 6.591 8 C -0.173 4.173 9 H 0.129 0.871 10 C -0.148 4.148 11 C -0.083 4.083 12 H 0.114 0.886 13 C -0.139 4.139 14 C 0.110 3.890 15 F -0.132 7.132 16 C -0.153 4.153 17 C -0.050 4.050 18 C -0.152 4.152 19 C 0.113 3.887 20 F -0.142 7.142 21 N -0.601 5.601 22 C 0.180 3.820 23 C -0.265 4.265 24 H 0.073 0.927 25 C -0.039 4.039 26 N -0.925 5.925 27 Si 0.958 3.042 28 H -0.275 1.275 29 H -0.300 1.300 30 H -0.286 1.286 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.411 0.589 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.188 0.812 41 H 0.171 0.829 42 H 0.000 1.000 43 H 0.024 0.976 44 H 0.013 0.987 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.123 3.670 14.356 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.013 4.013 5 N -0.344 5.344 6 C 0.324 3.676 7 O -0.474 6.474 8 C -0.194 4.194 9 H 0.146 0.854 10 C -0.185 4.185 11 C -0.102 4.102 12 H 0.132 0.868 13 C -0.141 4.141 14 C 0.091 3.909 15 F -0.110 7.110 16 C -0.172 4.172 17 C -0.068 4.068 18 C -0.170 4.170 19 C 0.094 3.906 20 F -0.120 7.120 21 N -0.324 5.324 22 C 0.035 3.965 23 C -0.395 4.395 24 H 0.090 0.910 25 C -0.235 4.235 26 N -0.571 5.571 27 Si 0.787 3.213 28 H -0.200 1.200 29 H -0.227 1.227 30 H -0.212 1.212 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.247 0.753 37 H 0.109 0.891 38 H 0.160 0.840 39 H 0.186 0.814 40 H 0.205 0.795 41 H 0.188 0.812 42 H 0.019 0.981 43 H 0.042 0.958 44 H 0.032 0.968 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.702 3.242 14.876 19.828 hybrid contribution -0.164 -0.074 -1.599 1.609 sum 12.538 3.168 13.277 18.534 Atomic orbital electron populations 1.22061 0.94966 1.01675 1.02097 1.20830 0.94322 0.95511 0.84340 0.90849 1.21915 0.79726 1.00183 0.99481 1.45824 1.08338 1.57648 1.22549 1.19871 0.88948 0.77001 0.81815 1.90601 1.70914 1.50599 1.35269 1.22186 0.91586 1.00242 1.05427 0.85356 1.23690 1.04122 0.92764 0.97957 1.20720 0.93893 1.02710 0.92846 0.86846 1.19192 0.94998 1.06592 0.93309 1.17538 0.94761 1.01003 0.77634 1.91350 1.94468 1.90308 1.34896 1.21611 0.95109 1.00993 0.99438 1.21366 1.00356 0.94921 0.90112 1.21596 0.90525 1.01385 1.03522 1.17504 0.87436 1.01272 0.84438 1.91502 1.62900 1.93149 1.64484 1.44052 1.57466 1.09464 1.21427 1.20417 0.94168 0.84899 0.96980 1.19448 1.16664 0.91283 1.12120 0.90976 1.25567 0.98748 0.96752 1.02448 1.70239 1.39750 1.09434 1.37653 0.85495 0.77832 0.77485 0.80462 1.20047 1.22678 1.21236 0.90485 0.92593 0.93325 0.91295 0.94089 0.75288 0.89076 0.84003 0.81383 0.79485 0.81175 0.98146 0.95800 0.96800 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.18 71.98 0.66 -4.03 16 2 C 0.16 5.94 2.87 44.99 0.13 6.07 16 3 H 0.07 2.71 7.86 -2.39 -0.02 2.69 16 4 C 0.11 4.31 4.98 86.38 0.43 4.74 16 5 N -0.70 -28.16 5.39 -463.07 -2.49 -30.65 16 6 C 0.54 21.85 7.61 87.66 0.67 22.52 16 7 O -0.59 -27.00 16.26 -3.04 -0.05 -27.05 16 8 C -0.17 -6.02 5.46 -11.54 -0.06 -6.08 16 9 H 0.13 4.20 7.92 -2.39 -0.02 4.18 16 10 C -0.15 -4.81 9.37 30.59 0.29 -4.52 16 11 C -0.08 -2.61 5.39 -11.54 -0.06 -2.67 16 12 H 0.11 3.95 7.23 -2.39 -0.02 3.93 16 13 C -0.14 -3.57 5.65 -19.78 -0.11 -3.68 16 14 C 0.11 2.46 7.05 22.37 0.16 2.61 16 15 F -0.13 -3.42 12.93 44.97 0.58 -2.84 16 16 C -0.15 -2.17 10.02 22.32 0.22 -1.95 16 17 C -0.05 -0.49 10.04 22.25 0.22 -0.27 16 18 C -0.15 -2.09 10.03 22.32 0.22 -1.87 16 19 C 0.11 2.54 7.25 22.37 0.16 2.70 16 20 F -0.14 -3.75 16.51 44.97 0.74 -3.01 16 21 N -0.60 -27.92 2.29 -702.78 -1.61 -29.53 16 22 C 0.18 8.78 8.13 127.77 1.04 9.82 16 23 C -0.27 -13.45 9.32 84.03 0.78 -12.66 16 24 H 0.07 3.54 7.82 -2.91 -0.02 3.51 16 25 C -0.04 -2.04 5.05 84.86 0.43 -1.61 16 26 N -0.93 -51.95 10.78 21.65 0.23 -51.72 16 27 Si 0.96 43.17 29.58 68.60 2.03 45.20 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 30 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.56 6.65 -2.39 -0.02 1.55 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.70 7.84 -2.38 -0.02 1.68 16 36 H 0.41 17.54 7.89 -92.70 -0.73 16.81 16 37 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.14 4.26 5.10 -2.39 -0.01 4.25 16 39 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.19 0.25 8.06 -2.91 -0.02 0.22 16 41 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.00 0.01 7.38 -2.38 -0.02 0.00 16 43 H 0.02 1.02 6.42 -2.39 -0.02 1.00 16 44 H 0.01 0.71 7.31 -2.39 -0.02 0.69 16 45 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -66.29 376.93 4.91 -61.38 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.30 Total: 29.10 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.18 Total: 9.12 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -3.87 Total: -111.90 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.32 Total: -5.85 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -66.29 4.91 -61.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329543213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.128 kcal (2) G-P(sol) polarization free energy of solvation -66.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds