Wall clock time and date at job start Tue Mar 31 2020 21:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46791 * 2 1 4 4 C 1.52998 * 109.47342 * 240.00300 * 2 1 3 5 5 N 1.46500 * 109.47689 * 184.99458 * 4 2 1 6 6 C 1.34771 * 120.00274 * 179.97438 * 5 4 2 7 7 O 1.21551 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.47847 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.39577 * 120.14205 * 359.72408 * 8 6 5 10 10 C 1.37966 * 119.85292 * 179.79016 * 9 8 6 11 11 C 1.38364 * 120.14027 * 0.48816 * 10 9 8 12 12 P 1.81393 * 119.85140 * 179.71885 * 11 10 9 13 13 C 1.82306 * 109.47314 * 330.02351 * 12 11 10 14 14 C 1.82302 * 109.47114 * 90.02242 * 12 11 10 15 15 O 1.47997 * 109.47442 * 210.02375 * 12 11 10 16 16 C 1.38354 * 120.29312 * 359.74370 * 11 10 9 17 17 C 1.37960 * 120.15003 * 0.02562 * 16 11 10 18 18 N 1.46500 * 109.47534 * 120.00292 * 2 1 3 19 19 C 1.46501 * 119.99805 * 59.99815 * 18 2 1 20 20 C 1.36939 * 119.99744 * 240.00564 * 18 2 1 21 21 H 1.07991 * 120.00398 * 23.10224 * 20 18 2 22 22 C 1.38815 * 119.99548 * 203.10660 * 20 18 2 23 23 N 1.31618 * 120.00305 * 11.68642 * 22 20 18 24 24 Si 1.86806 * 119.99709 * 191.69132 * 22 20 18 25 25 H 1.48499 * 109.47016 * 89.99823 * 24 22 20 26 26 H 1.48499 * 109.46934 * 209.99634 * 24 22 20 27 27 H 1.48494 * 109.47315 * 329.99632 * 24 22 20 28 28 H 1.08997 * 109.47315 * 60.00318 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46998 * 299.99445 * 1 2 3 31 31 H 1.09002 * 109.47027 * 64.99316 * 4 2 1 32 32 H 1.09001 * 109.47083 * 304.99915 * 4 2 1 33 33 H 0.97001 * 119.99581 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.07403 * 359.97438 * 9 8 6 35 35 H 1.07994 * 119.93190 * 180.23053 * 10 9 8 36 36 H 1.08998 * 109.47115 * 60.00008 * 13 12 11 37 37 H 1.08995 * 109.46783 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46901 * 300.00182 * 13 12 11 39 39 H 1.09003 * 109.47043 * 59.99967 * 14 12 11 40 40 H 1.09004 * 109.47425 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47224 * 299.99937 * 14 12 11 42 42 H 1.08000 * 119.92542 * 180.02562 * 16 11 10 43 43 H 1.07991 * 120.07768 * 179.97438 * 17 16 11 44 44 H 1.09003 * 109.46665 * 93.94669 * 19 18 2 45 45 H 1.09000 * 109.46770 * 213.93940 * 19 18 2 46 46 H 1.08999 * 109.47408 * 333.94227 * 19 18 2 47 47 H 0.96995 * 120.00172 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1907 6 6 4.1730 -1.4289 -2.1909 7 8 3.5686 -1.8850 -3.1417 8 6 5.6465 -1.5354 -2.1314 9 6 6.3440 -1.0077 -1.0437 10 6 7.7186 -1.1142 -0.9923 11 6 8.4064 -1.7336 -2.0208 12 15 10.2143 -1.8626 -1.9488 13 6 10.8883 -0.4450 -1.0215 14 6 10.6800 -3.4134 -1.1112 15 8 10.7643 -1.8596 -3.3228 16 6 7.7214 -2.2545 -3.1041 17 6 6.3464 -2.1589 -3.1656 18 7 2.0184 -0.6906 1.1961 19 6 1.6645 -2.0932 1.4279 20 6 2.8057 -0.0251 2.0975 21 1 2.7708 1.0529 2.1524 22 6 3.6486 -0.7361 2.9407 23 7 3.8671 -2.0162 2.7262 24 14 4.4726 0.1239 4.3798 25 1 3.6009 0.0287 5.5782 26 1 5.7772 -0.5261 4.6637 27 1 4.6946 1.5526 4.0414 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7516 -0.1582 -2.1370 32 1 1.6055 -1.7197 -1.2952 33 1 3.9824 -0.4626 -0.4317 34 1 5.8087 -0.5197 -0.2427 35 1 8.2593 -0.7097 -0.1495 36 1 10.4833 -0.4472 -0.0096 37 1 11.9746 -0.5228 -0.9779 38 1 10.6098 0.4822 -1.5223 39 1 10.2771 -4.2609 -1.6656 40 1 11.7664 -3.4907 -1.0675 41 1 10.2750 -3.4155 -0.0992 42 1 8.2641 -2.7371 -3.9034 43 1 5.8130 -2.5655 -4.0119 44 1 2.4510 -2.7364 1.0328 45 1 1.5554 -2.2683 2.4982 46 1 0.7240 -2.3186 0.9251 47 1 4.4558 -2.5131 3.3156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329623093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:14 Heat of formation + Delta-G solvation = -49.001025 kcal Electronic energy + Delta-G solvation = -27252.083571 eV Core-core repulsion = 23514.469701 eV Total energy + Delta-G solvation = -3737.613870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -39.91014 -38.11999 -36.73840 -33.86964 -33.15140 -32.32102 -31.18608 -30.88388 -29.39385 -29.06166 -27.90669 -26.16734 -25.98635 -23.54307 -23.03382 -22.50647 -20.04693 -19.47997 -17.88729 -17.05030 -16.72744 -15.94366 -15.39389 -14.98390 -14.89163 -14.67141 -14.63092 -14.06856 -14.00326 -13.85305 -13.67159 -13.51930 -13.26260 -13.15316 -13.00910 -12.78870 -12.71982 -12.38465 -12.25185 -12.17411 -12.06238 -11.70126 -11.60971 -11.24035 -11.15421 -10.94997 -10.82147 -10.51951 -10.41511 -9.99840 -9.91849 -9.89643 -9.84538 -9.59194 -9.24748 -9.05492 -8.73851 -8.49121 -6.94950 -5.90003 -3.38722 0.58770 1.31070 1.39968 2.94192 3.20979 3.28627 3.30326 3.60673 3.89179 4.30339 4.34232 4.53263 4.59087 4.72019 4.75779 4.83147 4.99168 5.13572 5.22328 5.25817 5.27653 5.28761 5.39775 5.49775 5.66580 5.69009 5.74435 5.83974 5.88677 5.99549 6.04551 6.08887 6.12784 6.25069 6.30313 6.36720 6.60178 6.70634 6.78966 6.81088 6.98816 7.28515 7.37077 7.59981 7.66424 8.03746 8.21225 8.61329 9.05412 9.68412 10.18598 11.12487 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.003590 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.438561 B = 7796.828697 C = 9643.225705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.691 5.691 6 C 0.546 3.454 7 O -0.553 6.553 8 C -0.088 4.088 9 C -0.092 4.092 10 C -0.082 4.082 11 C -0.716 4.716 12 P 2.561 2.439 13 C -0.812 4.812 14 C -0.810 4.810 15 O -1.005 7.005 16 C -0.053 4.053 17 C -0.082 4.082 18 N -0.595 5.595 19 C 0.163 3.837 20 C -0.262 4.262 21 H 0.068 0.932 22 C 0.006 3.994 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.028 0.972 45 H 0.042 0.958 46 H -0.001 1.001 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 1.099 -7.208 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.020 4.020 5 N -0.342 5.342 6 C 0.333 3.667 7 O -0.434 6.434 8 C -0.091 4.091 9 C -0.111 4.111 10 C -0.100 4.100 11 C -0.705 4.705 12 P 2.630 2.370 13 C -0.857 4.857 14 C -0.855 4.855 15 O -1.108 7.108 16 C -0.070 4.070 17 C -0.101 4.101 18 N -0.318 5.318 19 C 0.018 3.982 20 C -0.391 4.391 21 H 0.086 0.914 22 C -0.193 4.193 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.205 1.205 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.253 0.747 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.165 0.835 43 H 0.159 0.841 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.018 0.982 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.883 0.670 -6.863 11.245 hybrid contribution 0.152 0.487 2.584 2.634 sum 9.034 1.157 -4.279 10.063 Atomic orbital electron populations 1.22164 0.97305 1.01538 1.00752 1.20664 0.92758 0.95860 0.85866 0.91305 1.22003 0.79539 1.01246 0.99182 1.45812 1.08423 1.57241 1.22710 1.18237 0.86787 0.78744 0.82981 1.90717 1.69766 1.48942 1.33965 1.20338 0.93763 0.99213 0.95782 1.21614 0.94793 0.97510 0.97152 1.20916 0.94983 0.97237 0.96840 1.33142 1.28012 1.08689 1.00706 0.89647 0.46424 0.47238 0.53656 1.31858 1.12873 1.25902 1.15058 1.31846 1.10884 1.28747 1.14015 1.95046 1.81536 1.88962 1.45218 1.20929 0.93950 0.95891 0.96255 1.21460 0.94238 0.96461 0.97925 1.43957 1.57895 1.09704 1.20232 1.20759 0.93983 0.84411 0.99021 1.19245 1.15996 0.91191 1.12697 0.91412 1.25011 0.97954 0.96111 1.00218 1.70084 1.38967 1.07310 1.38146 0.86348 0.78681 0.78784 0.83268 1.21390 1.21873 1.20482 0.93463 0.92896 0.92362 0.92549 0.92144 0.74723 0.84291 0.85482 0.88993 0.87391 0.86956 0.87065 0.87512 0.88973 0.83531 0.84140 0.95358 0.93884 0.98231 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.18 37.16 0.34 -2.19 16 2 C 0.16 2.91 2.87 -67.93 -0.19 2.71 16 3 H 0.07 1.25 7.87 -51.93 -0.41 0.85 16 4 C 0.11 1.94 4.97 -4.04 -0.02 1.92 16 5 N -0.69 -13.12 5.34 -61.25 -0.33 -13.45 16 6 C 0.55 10.48 7.77 -12.33 -0.10 10.38 16 7 O -0.55 -11.79 16.35 5.32 0.09 -11.70 16 8 C -0.09 -1.47 5.87 -104.97 -0.62 -2.09 16 9 C -0.09 -1.43 9.54 -39.18 -0.37 -1.80 16 10 C -0.08 -1.02 9.56 -39.63 -0.38 -1.40 16 11 C -0.72 -7.98 6.19 -39.49 -0.24 -8.22 16 12 P 2.56 20.98 5.23 -42.89 -0.22 20.76 16 13 C -0.81 -6.10 10.54 101.05 1.06 -5.03 16 14 C -0.81 -6.35 11.06 101.05 1.12 -5.23 16 15 O -1.00 -11.73 18.40 21.61 0.40 -11.34 16 16 C -0.05 -0.64 9.67 -39.64 -0.38 -1.03 16 17 C -0.08 -1.21 9.60 -39.18 -0.38 -1.58 16 18 N -0.59 -13.27 2.29 -173.48 -0.40 -13.67 16 19 C 0.16 3.77 8.11 59.85 0.49 4.25 16 20 C -0.26 -6.37 9.32 -15.06 -0.14 -6.51 16 21 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 22 C 0.01 0.15 5.12 -17.43 -0.09 0.06 16 23 N -0.90 -23.73 10.65 55.49 0.59 -23.14 16 24 Si 0.90 19.99 29.57 -169.99 -5.03 14.96 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 33 H 0.41 8.09 5.93 -40.82 -0.24 7.85 16 34 H 0.14 2.25 6.41 -52.49 -0.34 1.91 16 35 H 0.13 1.18 7.26 -52.49 -0.38 0.80 16 36 H 0.09 0.59 7.64 -51.93 -0.40 0.19 16 37 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.15 1.40 8.03 -52.49 -0.42 0.98 16 43 H 0.14 1.98 7.65 -52.49 -0.40 1.58 16 44 H 0.03 0.72 7.41 -51.93 -0.38 0.34 16 45 H 0.04 1.08 7.23 -51.93 -0.38 0.71 16 46 H 0.00 -0.02 6.43 -51.93 -0.33 -0.35 16 47 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -32.57 396.12 -6.20 -38.76 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.36 Total: 8.58 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 0.10 Total: -15.75 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.13 Total: -50.25 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.48 Total: -23.04 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 15 Polarization: 20.98 SS G_CDS: -0.22 Total: 20.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.57 -6.20 -38.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329623093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.239 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds