Wall clock time and date at job start Tue Mar 31 2020 21:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46791 * 2 1 4 4 C 1.52998 * 109.47342 * 240.00300 * 2 1 3 5 5 N 1.46500 * 109.47689 * 184.99458 * 4 2 1 6 6 C 1.34771 * 120.00274 * 179.97438 * 5 4 2 7 7 O 1.21551 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.47847 * 119.99961 * 180.02562 * 6 5 4 9 9 C 1.39577 * 120.14205 * 359.72408 * 8 6 5 10 10 C 1.37966 * 119.85292 * 179.79016 * 9 8 6 11 11 C 1.38364 * 120.14027 * 0.48816 * 10 9 8 12 12 P 1.81393 * 119.85140 * 179.71885 * 11 10 9 13 13 C 1.82306 * 109.47314 * 330.02351 * 12 11 10 14 14 C 1.82302 * 109.47114 * 90.02242 * 12 11 10 15 15 O 1.47997 * 109.47442 * 210.02375 * 12 11 10 16 16 C 1.38354 * 120.29312 * 359.74370 * 11 10 9 17 17 C 1.37960 * 120.15003 * 0.02562 * 16 11 10 18 18 N 1.46500 * 109.47534 * 120.00292 * 2 1 3 19 19 C 1.46501 * 119.99805 * 59.99815 * 18 2 1 20 20 C 1.36939 * 119.99744 * 240.00564 * 18 2 1 21 21 H 1.07991 * 120.00398 * 23.10224 * 20 18 2 22 22 C 1.38815 * 119.99548 * 203.10660 * 20 18 2 23 23 N 1.31618 * 120.00305 * 11.68642 * 22 20 18 24 24 Si 1.86806 * 119.99709 * 191.69132 * 22 20 18 25 25 H 1.48499 * 109.47016 * 89.99823 * 24 22 20 26 26 H 1.48499 * 109.46934 * 209.99634 * 24 22 20 27 27 H 1.48494 * 109.47315 * 329.99632 * 24 22 20 28 28 H 1.08997 * 109.47315 * 60.00318 * 1 2 3 29 29 H 1.09004 * 109.46660 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46998 * 299.99445 * 1 2 3 31 31 H 1.09002 * 109.47027 * 64.99316 * 4 2 1 32 32 H 1.09001 * 109.47083 * 304.99915 * 4 2 1 33 33 H 0.97001 * 119.99581 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.07403 * 359.97438 * 9 8 6 35 35 H 1.07994 * 119.93190 * 180.23053 * 10 9 8 36 36 H 1.08998 * 109.47115 * 60.00008 * 13 12 11 37 37 H 1.08995 * 109.46783 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.46901 * 300.00182 * 13 12 11 39 39 H 1.09003 * 109.47043 * 59.99967 * 14 12 11 40 40 H 1.09004 * 109.47425 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47224 * 299.99937 * 14 12 11 42 42 H 1.08000 * 119.92542 * 180.02562 * 16 11 10 43 43 H 1.07991 * 120.07768 * 179.97438 * 17 16 11 44 44 H 1.09003 * 109.46665 * 93.94669 * 19 18 2 45 45 H 1.09000 * 109.46770 * 213.93940 * 19 18 2 46 46 H 1.08999 * 109.47408 * 333.94227 * 19 18 2 47 47 H 0.96995 * 120.00172 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1907 6 6 4.1730 -1.4289 -2.1909 7 8 3.5686 -1.8850 -3.1417 8 6 5.6465 -1.5354 -2.1314 9 6 6.3440 -1.0077 -1.0437 10 6 7.7186 -1.1142 -0.9923 11 6 8.4064 -1.7336 -2.0208 12 15 10.2143 -1.8626 -1.9488 13 6 10.8883 -0.4450 -1.0215 14 6 10.6800 -3.4134 -1.1112 15 8 10.7643 -1.8596 -3.3228 16 6 7.7214 -2.2545 -3.1041 17 6 6.3464 -2.1589 -3.1656 18 7 2.0184 -0.6906 1.1961 19 6 1.6645 -2.0932 1.4279 20 6 2.8057 -0.0251 2.0975 21 1 2.7708 1.0529 2.1524 22 6 3.6486 -0.7361 2.9407 23 7 3.8671 -2.0162 2.7262 24 14 4.4726 0.1239 4.3798 25 1 3.6009 0.0287 5.5782 26 1 5.7772 -0.5261 4.6637 27 1 4.6946 1.5526 4.0414 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7516 -0.1582 -2.1370 32 1 1.6055 -1.7197 -1.2952 33 1 3.9824 -0.4626 -0.4317 34 1 5.8087 -0.5197 -0.2427 35 1 8.2593 -0.7097 -0.1495 36 1 10.4833 -0.4472 -0.0096 37 1 11.9746 -0.5228 -0.9779 38 1 10.6098 0.4822 -1.5223 39 1 10.2771 -4.2609 -1.6656 40 1 11.7664 -3.4907 -1.0675 41 1 10.2750 -3.4155 -0.0992 42 1 8.2641 -2.7371 -3.9034 43 1 5.8130 -2.5655 -4.0119 44 1 2.4510 -2.7364 1.0328 45 1 1.5554 -2.2683 2.4982 46 1 0.7240 -2.3186 0.9251 47 1 4.4558 -2.5131 3.3156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329623093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:12 Heat of formation + Delta-G solvation = -69.468868 kcal Electronic energy + Delta-G solvation = -27252.971123 eV Core-core repulsion = 23514.469701 eV Total energy + Delta-G solvation = -3738.501423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.26562 -39.39023 -38.36311 -35.52034 -34.07126 -33.85856 -32.28045 -32.08497 -31.04161 -29.70775 -28.48062 -28.05189 -27.37139 -25.09773 -24.44700 -23.63173 -21.44614 -21.03471 -19.15789 -18.86110 -17.77439 -17.35346 -17.10776 -16.37644 -16.04134 -15.82426 -15.72853 -15.71148 -15.06857 -14.75910 -14.68837 -14.51691 -14.37975 -14.32587 -14.07545 -13.94074 -13.80527 -13.71732 -13.59491 -13.24518 -13.01835 -12.89087 -12.83493 -12.66703 -12.56896 -12.52829 -12.32364 -12.23716 -12.12730 -11.78971 -11.53175 -11.15069 -10.72439 -10.65208 -10.62617 -10.41427 -10.13245 -9.98601 -8.81614 -7.81216 -5.31402 -0.54549 0.22812 0.74776 1.43421 1.48824 1.53707 1.63560 2.19868 2.48173 2.64545 3.31897 3.57164 3.60279 3.65188 3.78443 3.82158 3.95366 4.01591 4.10728 4.19741 4.21264 4.27605 4.33988 4.53740 4.57021 4.59236 4.64973 4.67801 4.76185 4.80392 4.86168 5.00456 5.04401 5.05297 5.13820 5.19505 5.22175 5.22509 5.26195 5.38926 5.53937 5.65569 5.70183 5.75529 6.31580 6.51661 6.69814 7.10262 7.14273 7.84817 8.31423 9.19941 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.003590 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.438561 B = 7796.828697 C = 9643.225705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 H 0.074 0.926 4 C 0.111 3.889 5 N -0.694 5.694 6 C 0.542 3.458 7 O -0.583 6.583 8 C -0.116 4.116 9 C -0.109 4.109 10 C -0.083 4.083 11 C -0.703 4.703 12 P 2.624 2.376 13 C -0.833 4.833 14 C -0.829 4.829 15 O -1.042 7.042 16 C -0.053 4.053 17 C -0.093 4.093 18 N -0.603 5.603 19 C 0.182 3.818 20 C -0.262 4.262 21 H 0.073 0.927 22 C -0.038 4.038 23 N -0.928 5.928 24 Si 0.955 3.045 25 H -0.296 1.296 26 H -0.297 1.297 27 H -0.267 1.267 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.411 0.589 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.176 0.824 43 H 0.140 0.860 44 H -0.002 1.002 45 H 0.016 0.984 46 H 0.022 0.978 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 2.153 -7.182 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.093 0.907 4 C -0.015 4.015 5 N -0.344 5.344 6 C 0.330 3.670 7 O -0.466 6.466 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.100 4.100 11 C -0.693 4.693 12 P 2.691 2.309 13 C -0.877 4.877 14 C -0.874 4.874 15 O -1.142 7.142 16 C -0.071 4.071 17 C -0.112 4.112 18 N -0.326 5.326 19 C 0.037 3.963 20 C -0.392 4.392 21 H 0.091 0.909 22 C -0.234 4.234 23 N -0.574 5.574 24 Si 0.785 3.215 25 H -0.224 1.224 26 H -0.223 1.223 27 H -0.192 1.192 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.249 0.751 34 H 0.143 0.857 35 H 0.179 0.821 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.193 0.807 43 H 0.158 0.842 44 H 0.016 0.984 45 H 0.035 0.965 46 H 0.041 0.959 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.281 1.759 -6.868 12.489 hybrid contribution -0.273 0.172 2.556 2.576 sum 10.008 1.931 -4.312 11.068 Atomic orbital electron populations 1.22057 0.94868 1.01719 1.02164 1.20852 0.94422 0.95531 0.84282 0.90740 1.21970 0.79288 1.00480 0.99741 1.45883 1.08701 1.57203 1.22570 1.18684 0.88027 0.77926 0.82380 1.90678 1.70690 1.50265 1.34954 1.20279 0.92406 1.01730 0.97525 1.21620 0.96215 0.98305 0.96614 1.21335 0.93913 0.96635 0.98163 1.33674 1.29481 1.06599 0.99518 0.87833 0.44134 0.46563 0.52385 1.31997 1.14002 1.25735 1.15976 1.31987 1.12076 1.28722 1.14616 1.95031 1.81981 1.89659 1.47555 1.21335 0.93063 0.95354 0.97324 1.21598 0.95438 0.96610 0.97518 1.44081 1.57787 1.09331 1.21394 1.20414 0.93969 0.84755 0.97187 1.19517 1.15426 0.91511 1.12706 0.90905 1.25594 0.98916 0.96590 1.02300 1.70244 1.39845 1.08512 1.38803 0.85451 0.77286 0.78469 0.80291 1.22354 1.22329 1.19174 0.90399 0.93307 0.92590 0.90859 0.93790 0.75103 0.85676 0.82137 0.87597 0.86208 0.86878 0.87049 0.86230 0.88163 0.80702 0.84237 0.98372 0.96542 0.95948 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.18 71.98 0.66 -3.82 16 2 C 0.16 5.65 2.87 44.99 0.13 5.78 16 3 H 0.07 2.62 7.87 -2.39 -0.02 2.60 16 4 C 0.11 4.05 4.97 86.38 0.43 4.48 16 5 N -0.69 -26.99 5.34 -465.98 -2.49 -29.48 16 6 C 0.54 21.49 7.77 86.79 0.67 22.17 16 7 O -0.58 -25.63 16.35 -3.88 -0.06 -25.69 16 8 C -0.12 -4.00 5.87 -20.09 -0.12 -4.12 16 9 C -0.11 -3.39 9.54 22.53 0.21 -3.17 16 10 C -0.08 -1.94 9.56 22.24 0.21 -1.72 16 11 C -0.70 -14.28 6.19 22.33 0.14 -14.14 16 12 P 2.62 36.31 5.23 -40.88 -0.21 36.10 16 13 C -0.83 -10.03 10.54 113.37 1.19 -8.84 16 14 C -0.83 -10.85 11.06 113.37 1.25 -9.59 16 15 O -1.04 -22.01 18.40 -41.19 -0.76 -22.77 16 16 C -0.05 -1.23 9.67 22.23 0.22 -1.02 16 17 C -0.09 -2.74 9.60 22.53 0.22 -2.53 16 18 N -0.60 -26.91 2.29 -702.78 -1.61 -28.52 16 19 C 0.18 8.59 8.11 127.77 1.04 9.62 16 20 C -0.26 -12.67 9.32 84.03 0.78 -11.89 16 21 H 0.07 3.42 7.82 -2.92 -0.02 3.40 16 22 C -0.04 -1.90 5.12 84.86 0.43 -1.47 16 23 N -0.93 -49.94 10.65 21.65 0.23 -49.71 16 24 Si 0.96 41.00 29.57 68.60 2.03 43.03 16 25 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.30 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.50 6.66 -2.38 -0.02 1.49 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.04 1.75 7.84 -2.39 -0.02 1.73 16 33 H 0.41 16.52 5.93 -92.71 -0.55 15.97 16 34 H 0.13 4.17 6.41 -2.91 -0.02 4.16 16 35 H 0.16 2.55 7.26 -2.91 -0.02 2.53 16 36 H 0.11 1.00 7.64 -2.39 -0.02 0.98 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.18 2.96 8.03 -2.91 -0.02 2.93 16 43 H 0.14 4.03 7.65 -2.92 -0.02 4.01 16 44 H 0.00 -0.11 7.41 -2.39 -0.02 -0.13 16 45 H 0.02 0.83 7.23 -2.39 -0.02 0.81 16 46 H 0.02 0.93 6.43 -2.39 -0.02 0.91 16 47 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 Total: -1.00 -70.75 396.12 5.02 -65.73 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.41 Total: 31.56 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 7.47 Total: -20.26 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.86 Total: -107.71 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.82 Total: -48.46 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 15 Polarization: 36.31 SS G_CDS: -0.21 Total: 36.10 kcal Total: -70.75 5.02 -65.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329623093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.737 kcal (2) G-P(sol) polarization free energy of solvation -70.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds