Wall clock time and date at job start Tue Mar 31 2020 21:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46788 * 2 1 4 4 C 1.52993 * 109.47564 * 120.00570 * 2 1 3 5 5 N 1.46494 * 109.47546 * 174.99982 * 4 2 1 6 6 C 1.34775 * 120.00561 * 179.97438 * 5 4 2 7 7 O 1.21553 * 119.99777 * 359.97438 * 6 5 4 8 8 C 1.47841 * 120.00240 * 179.97438 * 6 5 4 9 9 C 1.39571 * 120.14608 * 359.71898 * 8 6 5 10 10 C 1.37957 * 119.85481 * 179.79109 * 9 8 6 11 11 C 1.38356 * 120.14285 * 0.49161 * 10 9 8 12 12 P 1.81402 * 119.85509 * 179.72169 * 11 10 9 13 13 C 1.82310 * 109.46876 * 330.02064 * 12 11 10 14 14 C 1.82299 * 109.47488 * 90.01900 * 12 11 10 15 15 O 1.47996 * 109.47463 * 210.02224 * 12 11 10 16 16 C 1.38356 * 120.29479 * 359.74034 * 11 10 9 17 17 C 1.37962 * 120.14442 * 0.02562 * 16 11 10 18 18 N 1.46498 * 109.46676 * 240.00358 * 2 1 3 19 19 C 1.46504 * 120.00340 * 299.99718 * 18 2 1 20 20 C 1.36945 * 120.00092 * 119.72344 * 18 2 1 21 21 H 1.08004 * 119.99800 * 23.13044 * 20 18 2 22 22 C 1.38807 * 120.00261 * 203.12886 * 20 18 2 23 23 N 1.31623 * 119.99919 * 13.02929 * 22 20 18 24 24 Si 1.86798 * 120.00168 * 193.02728 * 22 20 18 25 25 H 1.48503 * 109.47235 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47322 * 120.00040 * 24 22 20 27 27 H 1.48506 * 109.46957 * 239.99882 * 24 22 20 28 28 H 1.08994 * 109.47496 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46939 * 299.99736 * 1 2 3 30 30 H 1.08999 * 109.47872 * 59.99293 * 1 2 3 31 31 H 1.09005 * 109.47121 * 294.99846 * 4 2 1 32 32 H 1.08998 * 109.47526 * 54.99288 * 4 2 1 33 33 H 0.97003 * 119.99616 * 359.97438 * 5 4 2 34 34 H 1.08004 * 120.07492 * 0.02562 * 9 8 6 35 35 H 1.08005 * 119.92933 * 180.22998 * 10 9 8 36 36 H 1.08999 * 109.47120 * 60.00070 * 13 12 11 37 37 H 1.09000 * 109.46485 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.47172 * 299.99792 * 13 12 11 39 39 H 1.09001 * 109.46931 * 59.99884 * 14 12 11 40 40 H 1.08994 * 109.47638 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.46754 * 300.00347 * 14 12 11 42 42 H 1.08000 * 119.93328 * 180.02562 * 16 11 10 43 43 H 1.07997 * 120.07227 * 179.97438 * 17 16 11 44 44 H 1.08999 * 109.46866 * 95.12079 * 19 18 2 45 45 H 1.09002 * 109.47095 * 215.12417 * 19 18 2 46 46 H 1.08995 * 109.46746 * 335.12818 * 19 18 2 47 47 H 0.97001 * 119.99675 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4284 2.1909 7 8 3.5689 -1.8837 3.1422 8 6 5.6466 -1.5349 2.1313 9 6 6.3431 -1.0184 1.0376 10 6 7.7183 -1.1173 0.9903 11 6 8.4062 -1.7359 2.0190 12 15 10.2139 -1.8683 1.9451 13 6 10.7456 -1.9613 0.2038 14 6 10.9631 -0.4044 2.7319 15 8 10.6488 -3.0892 2.6596 16 6 7.7215 -2.2543 3.1038 17 6 6.3467 -2.1578 3.1658 18 7 2.0182 -0.6905 -1.1962 19 6 1.6643 -2.0931 -1.4282 20 6 2.8008 -0.0234 -2.1005 21 1 3.3631 0.8452 -1.7909 22 6 2.8715 -0.4634 -3.4151 23 7 2.0058 -1.3495 -3.8600 24 14 4.1952 0.2019 -4.5529 25 1 5.0361 1.1791 -3.8159 26 1 5.0433 -0.9181 -5.0338 27 1 3.5580 0.8741 -5.7137 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.7518 -0.1584 2.1369 32 1 1.6055 -1.7198 1.2951 33 1 3.9824 -0.4628 0.4314 34 1 5.8069 -0.5390 0.2319 35 1 8.2587 -0.7147 0.1463 36 1 10.4253 -1.0621 -0.3224 37 1 11.8318 -2.0404 0.1594 38 1 10.2977 -2.8366 -0.2666 39 1 10.6452 -0.3487 3.7730 40 1 12.0493 -0.4837 2.6871 41 1 10.6428 0.4948 2.2056 42 1 8.2644 -2.7356 3.9038 43 1 5.8134 -2.5632 4.0128 44 1 0.7889 -2.1447 -2.0755 45 1 2.5001 -2.6045 -1.9058 46 1 1.4407 -2.5736 -0.4758 47 1 2.0555 -1.6573 -4.7785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329623094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:19 Heat of formation + Delta-G solvation = -48.381062 kcal Electronic energy + Delta-G solvation = -26964.821819 eV Core-core repulsion = 23227.234832 eV Total energy + Delta-G solvation = -3737.586987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.08164 -38.27006 -36.76794 -33.99315 -33.23887 -32.30821 -31.33647 -31.00431 -29.41451 -29.16447 -28.00700 -26.12645 -26.06381 -23.61833 -23.10423 -22.65332 -20.22503 -19.50954 -18.03093 -17.05604 -16.83869 -16.07628 -15.46827 -15.08606 -15.03095 -14.80276 -14.70763 -14.14665 -14.06255 -13.97394 -13.79063 -13.67425 -13.37309 -13.25887 -13.03937 -12.83052 -12.80496 -12.47782 -12.34901 -12.20782 -12.05542 -11.73971 -11.52028 -11.35954 -11.18020 -10.94921 -10.86817 -10.51791 -10.37700 -10.01622 -10.00543 -9.93162 -9.88292 -9.73845 -9.40953 -9.22487 -8.72275 -8.64632 -6.91414 -5.86595 -3.35063 0.42432 1.13824 1.27731 2.77783 3.23398 3.28539 3.32957 3.42959 3.71677 4.23379 4.32949 4.41609 4.46539 4.58301 4.65145 4.67542 4.82192 5.01419 5.10858 5.15682 5.24939 5.25479 5.31219 5.46140 5.53998 5.56030 5.65639 5.72125 5.81224 5.90586 5.96171 6.01715 6.10494 6.15608 6.24073 6.35635 6.62708 6.66832 6.75139 6.76384 6.93238 7.27171 7.28031 7.60195 7.68570 7.84244 8.24318 8.43181 9.08240 9.71429 10.21488 11.17166 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011221 B = 0.003309 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.762467 B = 8459.053770 C =10382.087277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.105 3.895 5 N -0.697 5.697 6 C 0.545 3.455 7 O -0.548 6.548 8 C -0.090 4.090 9 C -0.100 4.100 10 C -0.082 4.082 11 C -0.715 4.715 12 P 2.558 2.442 13 C -0.811 4.811 14 C -0.809 4.809 15 O -1.003 7.003 16 C -0.050 4.050 17 C -0.081 4.081 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.266 4.266 21 H 0.068 0.932 22 C 0.008 3.992 23 N -0.899 5.899 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.289 1.289 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.410 0.590 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.031 0.969 45 H 0.039 0.961 46 H 0.000 1.000 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 2.107 11.152 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.086 0.914 4 C -0.020 4.020 5 N -0.347 5.347 6 C 0.331 3.669 7 O -0.427 6.427 8 C -0.093 4.093 9 C -0.118 4.118 10 C -0.100 4.100 11 C -0.704 4.704 12 P 2.628 2.372 13 C -0.856 4.856 14 C -0.854 4.854 15 O -1.106 7.106 16 C -0.068 4.068 17 C -0.099 4.099 18 N -0.317 5.317 19 C 0.019 3.981 20 C -0.395 4.395 21 H 0.086 0.914 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.730 3.270 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.216 1.216 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.247 0.753 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.018 0.982 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.234 2.484 11.159 17.488 hybrid contribution 0.337 1.441 -1.973 2.466 sum 13.571 3.925 9.186 16.851 Atomic orbital electron populations 1.22182 0.97296 1.01470 1.00651 1.20628 0.92745 0.95452 0.86376 0.91376 1.22022 0.78981 1.01586 0.99447 1.45866 1.08668 1.57539 1.22661 1.18263 0.86757 0.78826 0.83047 1.90739 1.69711 1.48589 1.33699 1.20349 0.93737 0.99379 0.95791 1.21587 0.94873 0.98059 0.97316 1.20934 0.94988 0.97014 0.97064 1.33179 1.28244 1.08153 1.00811 0.89742 0.46077 0.52372 0.49031 1.31855 1.11808 1.09101 1.32871 1.31841 1.13722 1.25198 1.14605 1.95055 1.84115 1.54287 1.77146 1.20972 0.94080 0.95062 0.96673 1.21490 0.94257 0.96130 0.98061 1.44016 1.58425 1.07985 1.21316 1.20737 0.99831 0.83265 0.94252 1.19205 1.19412 1.11579 0.89302 0.91420 1.25030 0.98222 0.99335 0.96566 1.70077 1.34938 1.33767 1.15531 0.86274 0.81447 0.78147 0.81128 1.20426 1.21599 1.21608 0.93087 0.93922 0.92134 0.92190 0.91782 0.75264 0.84449 0.85328 0.89048 0.87327 0.86828 0.87093 0.87431 0.89097 0.83390 0.83999 0.95064 0.94251 0.98198 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.19 37.16 0.34 -2.35 16 2 C 0.16 2.92 2.87 -67.94 -0.19 2.73 16 3 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 4 C 0.11 1.83 4.93 -4.05 -0.02 1.81 16 5 N -0.70 -11.92 5.34 -61.26 -0.33 -12.25 16 6 C 0.55 9.43 7.77 -12.33 -0.10 9.33 16 7 O -0.55 -10.84 16.35 5.32 0.09 -10.75 16 8 C -0.09 -1.32 5.87 -104.97 -0.62 -1.93 16 9 C -0.10 -1.30 9.54 -39.19 -0.37 -1.68 16 10 C -0.08 -0.85 9.56 -39.64 -0.38 -1.23 16 11 C -0.71 -6.79 6.19 -39.49 -0.24 -7.03 16 12 P 2.56 17.64 5.23 -42.89 -0.22 17.42 16 13 C -0.81 -5.42 10.54 101.05 1.06 -4.36 16 14 C -0.81 -4.86 11.06 101.05 1.12 -3.74 16 15 O -1.00 -10.85 18.40 21.61 0.40 -10.45 16 16 C -0.05 -0.54 9.67 -39.64 -0.38 -0.92 16 17 C -0.08 -1.05 9.60 -39.18 -0.38 -1.43 16 18 N -0.59 -13.42 2.28 -173.49 -0.40 -13.82 16 19 C 0.16 3.84 8.00 59.85 0.48 4.32 16 20 C -0.27 -6.55 9.33 -15.06 -0.14 -6.69 16 21 H 0.07 1.60 7.82 -52.48 -0.41 1.19 16 22 C 0.01 0.21 5.10 -17.43 -0.09 0.12 16 23 N -0.90 -24.88 10.70 55.49 0.59 -24.28 16 24 Si 0.90 20.32 29.57 -169.99 -5.03 15.29 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 28 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.20 6.86 -51.93 -0.36 0.84 16 33 H 0.41 6.94 5.94 -40.82 -0.24 6.69 16 34 H 0.14 1.77 6.41 -52.48 -0.34 1.43 16 35 H 0.13 0.92 7.26 -52.48 -0.38 0.54 16 36 H 0.09 0.48 7.64 -51.93 -0.40 0.08 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.15 1.21 8.03 -52.49 -0.42 0.79 16 43 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 44 H 0.03 0.80 7.33 -51.93 -0.38 0.42 16 45 H 0.04 1.00 7.35 -51.93 -0.38 0.62 16 46 H 0.00 -0.01 6.53 -51.93 -0.34 -0.35 16 47 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -33.93 396.23 -6.21 -40.13 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.37 Total: 5.79 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.13 Total: -50.35 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.48 Total: -21.20 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 15 Polarization: 17.64 SS G_CDS: -0.22 Total: 17.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.93 -6.21 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329623094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.247 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds