Wall clock time and date at job start Tue Mar 31 2020 20:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.50697 * 109.46948 * 240.00176 * 2 1 3 5 5 H 1.08004 * 119.99616 * 239.99631 * 4 2 1 6 6 C 1.37872 * 120.00273 * 59.99988 * 4 2 1 7 7 N 1.31510 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00138 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47046 * 89.99843 * 8 6 4 10 10 H 1.48496 * 109.47136 * 209.99793 * 8 6 4 11 11 H 1.48494 * 109.47062 * 329.99795 * 8 6 4 12 12 N 1.46898 * 109.47122 * 119.99787 * 2 1 3 13 13 C 1.46900 * 110.99825 * 58.95826 * 12 2 1 14 14 C 1.38356 * 111.00256 * 294.99834 * 12 2 1 15 15 N 1.31421 * 126.36528 * 0.02637 * 14 12 2 16 16 N 1.28515 * 110.07421 * 179.97438 * 15 14 12 17 17 C 1.31292 * 109.92845 * 0.02562 * 16 15 14 18 18 C 1.47770 * 126.47502 * 179.97438 * 17 16 15 19 19 C 1.40688 * 120.23500 * 341.89136 * 18 17 16 20 20 N 1.30809 * 121.41308 * 179.97438 * 19 18 17 21 21 C 1.33654 * 121.68128 * 359.97438 * 20 19 18 22 22 C 1.40854 * 120.90287 * 180.33449 * 21 20 19 23 23 C 1.36564 * 118.29881 * 180.21224 * 22 21 20 24 24 C 1.39349 * 120.02842 * 359.47382 * 23 22 21 25 25 N 1.31102 * 121.58740 * 0.24763 * 24 23 22 26 26 C 1.33640 * 121.29762 * 0.02767 * 25 24 23 27 27 C 1.38888 * 120.23919 * 161.86378 * 18 17 16 28 28 N 1.36442 * 126.36736 * 180.33734 * 14 12 2 29 29 C 1.46504 * 127.16260 * 359.97438 * 28 14 12 30 30 H 1.09005 * 109.46950 * 299.99911 * 1 2 3 31 31 H 1.08995 * 109.46998 * 59.99785 * 1 2 3 32 32 H 1.09002 * 109.47032 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00500 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46767 * 296.04189 * 13 12 2 35 35 H 1.08996 * 109.47427 * 56.04013 * 13 12 2 36 36 H 1.09001 * 109.47165 * 176.04783 * 13 12 2 37 37 H 1.08009 * 119.29481 * 359.97438 * 19 18 17 38 38 H 1.07997 * 120.85105 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.98691 * 179.74767 * 23 22 21 40 40 H 1.08007 * 119.20723 * 180.27677 * 24 23 22 41 41 H 1.07997 * 120.96981 * 0.05032 * 27 18 17 42 42 H 1.08990 * 109.47231 * 264.19791 * 29 28 14 43 43 H 1.09005 * 109.46903 * 24.20130 * 29 28 14 44 44 H 1.09001 * 109.46938 * 144.19351 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6704 -0.0033 2.3472 15 7 0.9928 1.1212 2.4051 16 7 0.8447 1.4845 3.6289 17 6 1.4191 0.6142 4.4267 18 6 1.4698 0.6751 5.9023 19 6 1.2175 1.8872 6.5704 20 7 1.2557 1.9670 7.8755 21 6 1.5351 0.9040 8.6359 22 6 1.5650 1.0070 10.0404 23 6 1.8607 -0.1118 10.7654 24 6 2.1125 -1.3181 10.1148 25 7 2.0786 -1.4134 8.8077 26 6 1.8008 -0.3544 8.0413 27 6 1.7663 -0.4641 6.6395 28 7 1.9704 -0.3618 3.6290 29 6 2.7197 -1.5427 4.0654 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.7081 1.1609 -3.4844 34 1 0.4420 -2.0730 1.3347 35 1 1.8167 -2.5950 0.3318 36 1 1.9618 -2.5868 2.1059 37 1 0.9872 2.7707 5.9934 38 1 1.3631 1.9476 10.5311 39 1 1.8951 -0.0628 11.8438 40 1 2.3406 -2.1958 10.7014 41 1 1.9643 -1.4065 6.1506 42 1 2.0229 -2.3387 4.3276 43 1 3.3692 -1.8798 3.2575 44 1 3.3246 -1.2880 4.9356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338196221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:42 Heat of formation + Delta-G solvation = 178.687772 kcal Electronic energy + Delta-G solvation = -28456.915917 eV Core-core repulsion = 24605.074947 eV Total energy + Delta-G solvation = -3851.840969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65778 -41.37556 -38.24221 -37.43776 -35.23537 -34.14238 -32.89826 -31.92130 -31.26511 -29.09884 -28.75977 -27.84969 -25.61654 -25.25964 -25.02723 -24.46444 -22.89437 -21.78755 -21.27709 -19.67732 -19.04279 -17.70039 -17.44290 -16.74902 -16.25815 -16.09297 -15.66412 -15.30556 -15.15734 -15.00967 -14.76509 -14.47963 -13.95224 -13.72636 -13.55404 -13.49684 -13.24197 -12.88097 -12.69607 -12.43695 -12.31335 -11.61152 -11.53347 -11.37019 -11.22563 -11.01445 -10.96587 -10.81570 -10.68348 -10.34986 -10.14951 -9.98090 -9.96475 -9.67421 -9.43733 -9.17121 -8.98021 -8.80031 -8.45690 -7.42968 -6.09236 -4.17168 -0.20851 0.17485 1.42755 2.05150 2.39726 2.62299 3.24983 3.25797 3.32770 3.35044 3.59339 3.77813 3.93713 4.06966 4.19620 4.26424 4.39093 4.44277 4.49346 4.58177 4.60611 4.88546 4.96569 5.11064 5.18880 5.21221 5.23038 5.32560 5.46990 5.56588 5.63057 5.68920 5.87410 5.90187 6.01806 6.13891 6.26079 6.35068 6.63738 6.79822 6.98994 7.11511 7.32244 7.38450 7.47931 7.52319 7.66135 7.87898 8.19897 8.33247 8.83253 9.10775 9.47699 10.97087 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.002381 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.943507 B =11758.951057 C =12419.316139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.227 3.773 3 H 0.057 0.943 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.449 5.449 13 C 0.028 3.972 14 C 0.403 3.597 15 N -0.307 5.307 16 N -0.250 5.250 17 C 0.166 3.834 18 C -0.018 4.018 19 C 0.174 3.826 20 N -0.460 5.460 21 C 0.075 3.925 22 C -0.041 4.041 23 C -0.163 4.163 24 C 0.133 3.867 25 N -0.465 5.465 26 C 0.084 3.916 27 C -0.054 4.054 28 N -0.486 5.486 29 C 0.070 3.930 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.180 0.820 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -5.484 24.893 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.123 3.877 3 H 0.075 0.925 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.172 5.172 13 C -0.119 4.119 14 C 0.049 3.951 15 N -0.154 5.154 16 N -0.092 5.092 17 C -0.097 4.097 18 C -0.025 4.025 19 C -0.001 4.001 20 N -0.167 5.167 21 C -0.048 4.048 22 C -0.067 4.067 23 C -0.185 4.185 24 C -0.041 4.041 25 N -0.174 5.174 26 C -0.038 4.038 27 C -0.082 4.082 28 N -0.183 5.183 29 C -0.073 4.073 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.197 0.803 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.258 -4.205 24.156 24.623 hybrid contribution 0.383 -1.663 -0.474 1.771 sum 2.641 -5.868 23.682 24.540 Atomic orbital electron populations 1.22426 0.98886 0.99109 1.02765 1.19446 0.91381 0.94867 0.81958 0.92497 1.20996 1.32070 1.13100 0.89406 0.91762 1.24894 0.94969 0.95020 0.98973 1.69909 1.35895 1.22427 1.23782 0.86462 0.79144 0.79255 0.82325 1.20674 1.21119 1.19844 1.59235 1.55171 1.03383 0.99402 1.22505 0.98548 0.87650 1.03219 1.23359 0.93657 0.94335 0.83796 1.74981 1.17919 1.12172 1.10300 1.74299 1.16887 1.21316 0.96708 1.21892 1.05020 0.91045 0.91744 1.18507 1.00937 0.95045 0.87985 1.23241 0.90862 0.96649 0.89384 1.67989 1.12929 1.29600 1.06193 1.19738 0.99843 0.90149 0.95093 1.21328 0.94487 0.99823 0.91069 1.21991 1.01017 0.93510 1.02002 1.23075 0.93243 0.97555 0.90218 1.67989 1.12626 1.30061 1.06696 1.19374 1.00105 0.90281 0.94079 1.21773 0.96319 0.98795 0.91363 1.46046 1.44465 1.21635 1.06179 1.22304 0.96672 0.85614 1.02754 0.94385 0.88863 0.95850 0.92648 0.94373 0.88282 0.93114 0.80315 0.83412 0.83767 0.81810 0.83063 0.90238 0.87948 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 8.26 37.16 0.31 -3.95 16 2 C 0.23 5.66 2.03 -68.86 -0.14 5.52 16 3 H 0.06 1.63 7.95 -51.93 -0.41 1.21 16 4 C -0.52 -13.47 7.88 -34.44 -0.27 -13.74 16 5 H 0.06 1.62 6.77 -52.48 -0.36 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.45 -9.39 4.75 -176.10 -0.84 -10.23 16 13 C 0.03 0.48 8.54 60.06 0.51 1.00 16 14 C 0.40 8.09 6.74 -318.96 -2.15 5.94 16 15 N -0.31 -6.81 9.29 30.30 0.28 -6.53 16 16 N -0.25 -4.91 12.00 32.58 0.39 -4.52 16 17 C 0.17 2.71 7.71 -153.77 -1.18 1.53 16 18 C -0.02 -0.24 5.88 -104.84 -0.62 -0.86 16 19 C 0.17 2.21 10.84 -17.06 -0.19 2.02 16 20 N -0.46 -5.74 10.30 -10.62 -0.11 -5.85 16 21 C 0.07 0.86 6.61 -84.76 -0.56 0.30 16 22 C -0.04 -0.34 10.10 -39.20 -0.40 -0.73 16 23 C -0.16 -0.99 10.02 -39.77 -0.40 -1.39 16 24 C 0.13 0.95 11.16 -17.45 -0.19 0.75 16 25 N -0.47 -4.88 10.34 -10.96 -0.11 -4.99 16 26 C 0.08 0.98 6.60 -84.85 -0.56 0.42 16 27 C -0.05 -0.63 8.82 -38.43 -0.34 -0.97 16 28 N -0.49 -7.78 3.23 -122.09 -0.39 -8.18 16 29 C 0.07 0.76 7.77 59.85 0.47 1.23 16 30 H 0.04 0.92 5.87 -51.93 -0.30 0.62 16 31 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 32 H 0.02 0.53 6.47 -51.93 -0.34 0.20 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.04 0.69 6.51 -51.93 -0.34 0.35 16 35 H 0.10 1.78 6.41 -51.93 -0.33 1.45 16 36 H 0.05 0.69 5.41 -51.93 -0.28 0.41 16 37 H 0.18 2.12 7.96 -52.48 -0.42 1.71 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.15 1.54 5.03 -52.49 -0.26 1.28 16 42 H 0.08 0.70 7.71 -51.93 -0.40 0.30 16 43 H 0.10 1.10 7.16 -51.93 -0.37 0.73 16 44 H 0.09 0.79 6.54 -51.93 -0.34 0.46 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -32.59 354.69 -10.51 -43.10 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.87 Total: 1.72 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -5.80 Total: -1.30 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.15 Total: -64.37 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.59 -10.51 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338196221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.787 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds