Wall clock time and date at job start Tue Mar 31 2020 20:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.50697 * 109.46948 * 240.00176 * 2 1 3 5 5 H 1.08004 * 119.99616 * 239.99631 * 4 2 1 6 6 C 1.37872 * 120.00273 * 59.99988 * 4 2 1 7 7 N 1.31510 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00138 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47046 * 89.99843 * 8 6 4 10 10 H 1.48496 * 109.47136 * 209.99793 * 8 6 4 11 11 H 1.48494 * 109.47062 * 329.99795 * 8 6 4 12 12 N 1.46898 * 109.47122 * 119.99787 * 2 1 3 13 13 C 1.46900 * 110.99825 * 58.95826 * 12 2 1 14 14 C 1.38356 * 111.00256 * 294.99834 * 12 2 1 15 15 N 1.31421 * 126.36528 * 0.02637 * 14 12 2 16 16 N 1.28515 * 110.07421 * 179.97438 * 15 14 12 17 17 C 1.31292 * 109.92845 * 0.02562 * 16 15 14 18 18 C 1.47770 * 126.47502 * 179.97438 * 17 16 15 19 19 C 1.40688 * 120.23500 * 341.89136 * 18 17 16 20 20 N 1.30809 * 121.41308 * 179.97438 * 19 18 17 21 21 C 1.33654 * 121.68128 * 359.97438 * 20 19 18 22 22 C 1.40854 * 120.90287 * 180.33449 * 21 20 19 23 23 C 1.36564 * 118.29881 * 180.21224 * 22 21 20 24 24 C 1.39349 * 120.02842 * 359.47382 * 23 22 21 25 25 N 1.31102 * 121.58740 * 0.24763 * 24 23 22 26 26 C 1.33640 * 121.29762 * 0.02767 * 25 24 23 27 27 C 1.38888 * 120.23919 * 161.86378 * 18 17 16 28 28 N 1.36442 * 126.36736 * 180.33734 * 14 12 2 29 29 C 1.46504 * 127.16260 * 359.97438 * 28 14 12 30 30 H 1.09005 * 109.46950 * 299.99911 * 1 2 3 31 31 H 1.08995 * 109.46998 * 59.99785 * 1 2 3 32 32 H 1.09002 * 109.47032 * 180.02562 * 1 2 3 33 33 H 0.97001 * 120.00500 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46767 * 296.04189 * 13 12 2 35 35 H 1.08996 * 109.47427 * 56.04013 * 13 12 2 36 36 H 1.09001 * 109.47165 * 176.04783 * 13 12 2 37 37 H 1.08009 * 119.29481 * 359.97438 * 19 18 17 38 38 H 1.07997 * 120.85105 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.98691 * 179.74767 * 23 22 21 40 40 H 1.08007 * 119.20723 * 180.27677 * 24 23 22 41 41 H 1.07997 * 120.96981 * 0.05032 * 27 18 17 42 42 H 1.08990 * 109.47231 * 264.19791 * 29 28 14 43 43 H 1.09005 * 109.46903 * 24.20130 * 29 28 14 44 44 H 1.09001 * 109.46938 * 144.19351 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 7 2.0197 -0.6924 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6704 -0.0033 2.3472 15 7 0.9928 1.1212 2.4051 16 7 0.8447 1.4845 3.6289 17 6 1.4191 0.6142 4.4267 18 6 1.4698 0.6751 5.9023 19 6 1.2175 1.8872 6.5704 20 7 1.2557 1.9670 7.8755 21 6 1.5351 0.9040 8.6359 22 6 1.5650 1.0070 10.0404 23 6 1.8607 -0.1118 10.7654 24 6 2.1125 -1.3181 10.1148 25 7 2.0786 -1.4134 8.8077 26 6 1.8008 -0.3544 8.0413 27 6 1.7663 -0.4641 6.6395 28 7 1.9704 -0.3618 3.6290 29 6 2.7197 -1.5427 4.0654 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.7081 1.1609 -3.4844 34 1 0.4420 -2.0730 1.3347 35 1 1.8167 -2.5950 0.3318 36 1 1.9618 -2.5868 2.1059 37 1 0.9872 2.7707 5.9934 38 1 1.3631 1.9476 10.5311 39 1 1.8951 -0.0628 11.8438 40 1 2.3406 -2.1958 10.7014 41 1 1.9643 -1.4065 6.1506 42 1 2.0229 -2.3387 4.3276 43 1 3.3692 -1.8798 3.2575 44 1 3.3246 -1.2880 4.9356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338196221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:41 Heat of formation + Delta-G solvation = 158.575177 kcal Electronic energy + Delta-G solvation = -28457.788064 eV Core-core repulsion = 24605.074947 eV Total energy + Delta-G solvation = -3852.713117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.03051 -42.17326 -39.29757 -38.83321 -36.42626 -35.21984 -34.60181 -32.92219 -32.05670 -30.80925 -30.17469 -28.94073 -27.30915 -26.85372 -25.92498 -25.49384 -23.84572 -23.23467 -22.47890 -21.24248 -19.94377 -18.51225 -18.37846 -18.35023 -17.63037 -17.57703 -17.10318 -16.40385 -16.27191 -16.01037 -15.98375 -15.60058 -15.16945 -15.04180 -14.66049 -14.49830 -14.31458 -14.13941 -13.72285 -13.57873 -13.41080 -13.15994 -13.03074 -12.95177 -12.66633 -12.52773 -12.47433 -12.22046 -12.09087 -12.01474 -11.76293 -11.47916 -11.25451 -10.94192 -10.89251 -10.51546 -10.21627 -9.99256 -9.94193 -8.94688 -8.12175 -6.27386 -1.01466 -0.63835 0.57243 0.94228 1.13417 1.45946 1.47193 1.57648 1.59990 2.01567 2.41724 2.67355 2.96244 2.97343 3.14329 3.17957 3.25830 3.35875 3.47306 3.62341 3.88213 3.92365 3.94445 4.06743 4.17130 4.29314 4.37047 4.45747 4.47669 4.53213 4.56809 4.65142 4.77622 4.83794 4.94419 4.98079 5.06322 5.06634 5.11600 5.13292 5.34105 5.54824 5.58776 5.59488 5.78176 5.98608 6.19181 6.50176 6.57725 6.72813 6.81531 7.41401 7.68113 8.94512 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.002381 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.943507 B =11758.951057 C =12419.316139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.007 0.993 4 C -0.524 4.524 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.453 5.453 13 C 0.029 3.971 14 C 0.383 3.617 15 N -0.356 5.356 16 N -0.293 5.293 17 C 0.198 3.802 18 C -0.043 4.043 19 C 0.164 3.836 20 N -0.470 5.470 21 C 0.060 3.940 22 C -0.057 4.057 23 C -0.136 4.136 24 C 0.139 3.861 25 N -0.488 5.488 26 C 0.065 3.935 27 C -0.035 4.035 28 N -0.478 5.478 29 C 0.056 3.944 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.028 0.972 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.190 0.810 40 H 0.205 0.795 41 H 0.168 0.832 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -8.612 28.709 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.025 0.975 4 C -0.563 4.563 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.175 5.175 13 C -0.118 4.118 14 C 0.027 3.973 15 N -0.202 5.202 16 N -0.134 5.134 17 C -0.068 4.068 18 C -0.050 4.050 19 C -0.011 4.011 20 N -0.177 5.177 21 C -0.064 4.064 22 C -0.083 4.083 23 C -0.157 4.157 24 C -0.034 4.034 25 N -0.197 5.197 26 C -0.056 4.056 27 C -0.063 4.063 28 N -0.173 5.173 29 C -0.084 4.084 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.191 0.809 38 H 0.182 0.818 39 H 0.207 0.793 40 H 0.222 0.778 41 H 0.185 0.815 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.624 -7.348 28.002 29.176 hybrid contribution 0.005 -0.765 -1.162 1.391 sum 3.629 -8.113 26.841 28.274 Atomic orbital electron populations 1.22195 0.99147 0.99003 1.01051 1.18982 0.90958 0.92780 0.83900 0.97483 1.21305 1.31842 1.13194 0.89926 0.90830 1.25788 0.95119 0.95665 1.02195 1.70077 1.37239 1.24053 1.24315 0.85377 0.78984 0.78001 0.78166 1.19800 1.21464 1.18753 1.59120 1.55538 1.04390 0.98466 1.22607 0.98203 0.86030 1.04927 1.23154 0.94911 0.94385 0.84880 1.74815 1.19672 1.13692 1.12015 1.74199 1.19488 1.23315 0.96365 1.22396 1.02003 0.89609 0.92799 1.18378 1.04288 0.96227 0.86098 1.23153 0.91596 0.96577 0.89762 1.68005 1.13371 1.30443 1.05901 1.20221 0.99696 0.89901 0.96583 1.21673 0.95199 1.01727 0.89750 1.22511 0.97232 0.91895 1.04088 1.23910 0.90646 0.99431 0.89416 1.68045 1.13906 1.29495 1.08277 1.19457 1.01063 0.90924 0.94175 1.21946 0.94064 0.98541 0.91785 1.46209 1.44013 1.22628 1.04477 1.22762 0.97374 0.84535 1.03778 0.94786 0.91766 0.94920 0.92806 0.95357 0.88801 0.88768 0.80850 0.81767 0.79259 0.77822 0.81474 0.87308 0.87395 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.06 8.26 71.98 0.59 -7.46 16 2 C 0.24 12.53 2.03 44.17 0.09 12.62 16 3 H 0.01 0.44 7.95 -2.39 -0.02 0.42 16 4 C -0.52 -27.93 7.88 25.60 0.20 -27.73 16 5 H 0.07 3.70 6.77 -2.91 -0.02 3.68 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.59 11.32 21.44 0.24 -53.35 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 12 N -0.45 -19.35 4.75 -711.06 -3.38 -22.73 16 13 C 0.03 0.98 8.54 127.69 1.09 2.07 16 14 C 0.38 15.91 6.74 260.14 1.75 17.66 16 15 N -0.36 -16.86 9.29 -58.05 -0.54 -17.40 16 16 N -0.29 -12.26 12.00 -50.83 -0.61 -12.87 16 17 C 0.20 6.61 7.71 136.18 1.05 7.66 16 18 C -0.04 -1.15 5.88 -20.00 -0.12 -1.27 16 19 C 0.16 4.31 10.84 85.44 0.93 5.23 16 20 N -0.47 -11.63 10.30 -187.51 -1.93 -13.56 16 21 C 0.06 1.27 6.61 40.36 0.27 1.53 16 22 C -0.06 -0.76 10.10 22.52 0.23 -0.53 16 23 C -0.14 -0.93 10.02 22.15 0.22 -0.71 16 24 C 0.14 1.29 11.16 85.07 0.95 2.24 16 25 N -0.49 -8.50 10.34 -188.57 -1.95 -10.45 16 26 C 0.07 1.39 6.60 40.31 0.27 1.65 16 27 C -0.03 -0.76 8.82 23.02 0.20 -0.56 16 28 N -0.48 -15.17 3.23 -540.18 -1.74 -16.91 16 29 C 0.06 1.09 7.77 127.77 0.99 2.08 16 30 H 0.03 1.76 5.87 -2.38 -0.01 1.75 16 31 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 32 H 0.03 1.57 6.47 -2.39 -0.02 1.55 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.03 1.01 6.51 -2.39 -0.02 0.99 16 35 H 0.09 3.29 6.41 -2.39 -0.02 3.27 16 36 H 0.09 2.33 5.41 -2.39 -0.01 2.32 16 37 H 0.17 4.53 7.96 -2.91 -0.02 4.51 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.19 -0.36 8.06 -2.91 -0.02 -0.39 16 40 H 0.21 0.19 8.06 -2.91 -0.02 0.16 16 41 H 0.17 2.95 5.03 -2.91 -0.01 2.94 16 42 H 0.11 1.52 7.71 -2.39 -0.02 1.50 16 43 H 0.11 2.04 7.16 -2.38 -0.02 2.02 16 44 H 0.11 1.67 6.54 -2.39 -0.02 1.65 16 Total: -1.00 -77.18 354.69 2.34 -74.84 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.06 Total: 12.28 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 9.16 Total: 15.58 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -9.91 Total: -147.27 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -77.18 2.34 -74.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338196221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.412 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds