Wall clock time and date at job start Tue Mar 31 2020 20:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 119.99988 * 2 1 4 4 N 1.46502 * 109.47137 * 125.00144 * 3 2 1 5 5 C 1.36449 * 127.13856 * 95.63585 * 4 3 2 6 6 N 1.38577 * 126.47426 * 0.23590 * 5 4 3 7 7 C 1.46903 * 111.00193 * 303.67308 * 6 5 4 8 8 C 1.46904 * 111.00295 * 179.71477 * 6 5 4 9 9 H 1.09002 * 109.46916 * 60.00454 * 8 6 5 10 10 C 1.52996 * 109.47314 * 300.00306 * 8 6 5 11 11 C 1.50703 * 109.47015 * 180.02562 * 8 6 5 12 12 H 1.07999 * 120.00091 * 359.97438 * 11 8 6 13 13 C 1.37878 * 119.99853 * 180.02562 * 11 8 6 14 14 N 1.31515 * 119.99968 * 359.97438 * 13 11 8 15 15 Si 1.86791 * 120.00112 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47421 * 59.99213 * 15 13 11 17 17 H 1.48498 * 109.47299 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.47196 * 299.99542 * 15 13 11 19 19 N 1.31220 * 107.05511 * 179.97438 * 5 4 3 20 20 N 1.28528 * 109.85739 * 359.97438 * 19 5 4 21 21 C 1.30294 * 110.05774 * 0.02562 * 20 19 5 22 22 C 1.50693 * 126.34952 * 180.02562 * 21 20 19 23 23 O 1.42910 * 109.60003 * 235.33293 * 22 21 20 24 24 C 1.52939 * 109.60497 * 115.00693 * 22 21 20 25 25 C 1.53711 * 112.49154 * 209.96538 * 24 22 21 26 26 S 1.83397 * 104.96575 * 2.82698 * 25 24 22 27 27 C 1.55151 * 109.60470 * 355.46883 * 22 21 20 28 28 H 1.07994 * 120.00256 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99802 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00592 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47229 * 5.00140 * 3 2 1 32 32 H 1.08998 * 109.47620 * 244.99898 * 3 2 1 33 33 H 1.09000 * 109.46637 * 59.99759 * 7 6 5 34 34 H 1.08996 * 109.46922 * 179.97438 * 7 6 5 35 35 H 1.08992 * 109.46951 * 299.99419 * 7 6 5 36 36 H 1.09002 * 109.47249 * 299.99943 * 10 8 6 37 37 H 1.09005 * 109.47076 * 59.99579 * 10 8 6 38 38 H 1.08992 * 109.47529 * 179.97438 * 10 8 6 39 39 H 0.96994 * 120.00282 * 180.02562 * 14 13 11 40 40 H 0.96698 * 113.99825 * 64.29148 * 23 22 21 41 41 H 1.08996 * 108.88743 * 330.76277 * 24 22 21 42 42 H 1.09004 * 108.88430 * 89.17792 * 24 22 21 43 43 H 1.08994 * 110.33911 * 121.69558 * 25 24 22 44 44 H 1.08999 * 110.34553 * 243.95859 * 25 24 22 45 45 H 1.09001 * 111.13081 * 279.28291 * 27 22 21 46 46 H 1.09000 * 111.13398 * 43.45776 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3174 1.0010 1.1176 6 7 5.0487 0.5754 0.0201 7 6 4.4377 -0.6125 -0.5912 8 6 6.4477 0.3180 0.3873 9 1 6.4856 -0.4559 1.1539 10 6 7.0777 1.6030 0.9282 11 6 7.2099 -0.1412 -0.8290 12 1 6.7055 -0.2331 -1.7795 13 6 8.5510 -0.4451 -0.7280 14 7 9.1651 -0.3336 0.4296 15 14 9.4959 -1.0136 -2.2356 16 1 9.4447 0.0417 -3.2791 17 1 10.9100 -1.2739 -1.8644 18 1 8.8844 -2.2603 -2.7621 19 7 4.7685 1.1674 2.3385 20 7 3.8195 1.5769 3.1025 21 6 2.7158 1.6946 2.4202 22 6 1.3807 2.1474 2.9525 23 8 0.3896 1.1588 2.6648 24 6 0.9894 3.4724 2.2966 25 6 0.1214 4.3488 3.2138 26 16 0.0023 3.4146 4.7875 27 6 1.4749 2.3532 4.4874 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4027 -0.9313 33 1 3.4255 -0.3733 -0.9171 34 1 5.0314 -0.9250 -1.4502 35 1 4.4029 -1.4200 0.1399 36 1 7.0398 2.3770 0.1616 37 1 6.5264 1.9356 1.8078 38 1 8.1155 1.4120 1.2011 39 1 10.1086 -0.5470 0.5006 40 1 0.5380 0.3124 3.1084 41 1 1.8959 4.0202 2.0397 42 1 0.4356 3.2630 1.3813 43 1 0.6010 5.3132 3.3810 44 1 -0.8688 4.4872 2.7796 45 1 1.3898 1.4043 5.0171 46 1 2.3946 2.8713 4.7588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338661683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:10 Heat of formation + Delta-G solvation = 68.162967 kcal Electronic energy + Delta-G solvation = -28841.579364 eV Core-core repulsion = 25088.096880 eV Total energy + Delta-G solvation = -3753.482484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.08969 -39.59829 -38.74856 -37.12591 -34.90675 -34.67965 -33.62931 -31.61839 -31.22983 -29.69752 -28.03436 -27.32169 -26.40501 -25.96788 -23.59707 -23.10535 -21.68232 -21.15577 -20.60247 -18.99753 -18.54604 -17.81812 -17.46798 -17.26899 -17.07569 -16.39976 -16.26380 -15.97705 -15.68887 -15.58456 -15.23879 -14.97014 -14.71221 -14.22612 -13.86100 -13.68369 -13.63607 -13.30347 -13.02975 -12.99833 -12.89501 -12.81465 -12.77975 -12.53227 -12.37067 -12.33018 -12.20488 -12.07043 -11.97534 -11.63062 -11.49828 -11.08569 -11.06842 -10.97604 -10.60001 -10.51319 -10.39087 -9.09601 -8.69761 -8.13922 -6.30033 0.71270 0.73504 1.00407 1.26561 1.43983 1.46701 1.54083 1.68970 1.81040 2.40502 2.82329 2.95679 3.11883 3.17074 3.24644 3.63438 3.68707 3.86740 3.91536 3.99457 4.04790 4.17861 4.29542 4.35574 4.42592 4.55553 4.62704 4.66958 4.72978 4.81419 4.81741 4.85954 4.86476 4.93731 5.03817 5.14006 5.28110 5.38579 5.49428 5.63422 5.67788 5.74824 5.92354 5.97268 6.15357 6.45171 6.55352 6.79310 7.38975 7.80591 8.92390 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.003252 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.752965 B = 8606.772084 C = 9475.207902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.208 4.208 3 C 0.135 3.865 4 N -0.460 5.460 5 C 0.373 3.627 6 N -0.455 5.455 7 C 0.032 3.968 8 C 0.244 3.756 9 H -0.025 1.025 10 C -0.128 4.128 11 C -0.531 4.531 12 H 0.074 0.926 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.969 3.031 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.265 1.265 19 N -0.362 5.362 20 N -0.307 5.307 21 C 0.142 3.858 22 C 0.245 3.755 23 O -0.522 6.522 24 C -0.116 4.116 25 C -0.054 4.054 26 S -0.299 6.299 27 C -0.075 4.075 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.016 0.984 36 H 0.020 0.980 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.263 0.737 40 H 0.390 0.610 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.629 4.923 -0.397 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.227 4.227 3 C 0.014 3.986 4 N -0.155 5.155 5 C 0.016 3.984 6 N -0.178 5.178 7 C -0.115 4.115 8 C 0.139 3.861 9 H -0.007 1.007 10 C -0.186 4.186 11 C -0.569 4.569 12 H 0.092 0.908 13 C -0.186 4.186 14 N -0.556 5.556 15 Si 0.794 3.206 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.190 1.190 19 N -0.207 5.207 20 N -0.147 5.147 21 C -0.129 4.129 22 C 0.198 3.802 23 O -0.328 6.328 24 C -0.155 4.155 25 C -0.202 4.202 26 S -0.072 6.072 27 C -0.224 4.224 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.240 0.760 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.136 0.864 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.554 5.840 1.032 24.289 hybrid contribution 1.716 -1.528 -1.501 2.744 sum -21.838 4.312 -0.469 22.265 Atomic orbital electron populations 1.23997 0.94299 1.03470 0.92915 1.22833 0.96933 0.96329 1.06557 1.21283 0.91309 0.99165 0.86820 1.46297 1.07814 1.50799 1.10613 1.23212 0.82868 1.00430 0.91868 1.58979 1.04264 1.33879 1.20678 1.22657 1.00518 0.88577 0.99705 1.18940 0.79603 0.93127 0.94470 1.00705 1.21773 1.01938 0.96715 0.98191 1.21345 0.94874 1.45434 0.95293 0.90806 1.25794 0.98429 0.95361 0.99040 1.70075 1.11062 1.48645 1.25826 0.85444 0.77119 0.79048 0.79019 1.19362 1.21321 1.18994 1.74736 1.23176 1.23631 0.99147 1.73851 0.96737 1.17253 1.26856 1.25573 0.99308 1.06285 0.81772 1.20011 0.78633 0.90094 0.91424 1.86597 1.47337 1.25335 1.73496 1.21978 1.01319 0.91347 1.00877 1.23954 1.04627 0.99903 0.91745 1.87920 1.39374 1.48089 1.31784 1.24866 0.98291 1.03059 0.96201 0.86708 0.86749 0.88275 0.86309 0.88184 0.88586 0.89065 0.96539 0.96121 0.93619 0.92119 0.92759 0.75974 0.90227 0.86901 0.87772 0.85733 0.86417 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 13.03 67.79 0.88 -0.40 16 2 C -0.21 -3.58 8.26 25.65 0.21 -3.36 16 3 C 0.13 2.76 5.25 85.63 0.45 3.21 16 4 N -0.46 -13.65 2.79 -518.92 -1.45 -15.10 16 5 C 0.37 15.17 6.75 260.11 1.76 16.92 16 6 N -0.45 -19.61 4.65 -711.00 -3.30 -22.92 16 7 C 0.03 1.14 8.77 127.69 1.12 2.26 16 8 C 0.24 12.91 1.73 44.17 0.08 12.99 16 9 H -0.02 -1.50 8.11 -2.39 -0.02 -1.52 16 10 C -0.13 -6.93 8.77 71.98 0.63 -6.30 16 11 C -0.53 -28.59 7.88 25.60 0.20 -28.39 16 12 H 0.07 3.74 6.41 -2.91 -0.02 3.72 16 13 C 0.01 0.74 5.30 84.65 0.45 1.19 16 14 N -0.92 -53.77 11.32 21.45 0.24 -53.53 16 15 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 N -0.36 -16.58 9.00 -58.01 -0.52 -17.10 16 20 N -0.31 -11.85 11.26 -49.54 -0.56 -12.41 16 21 C 0.14 4.11 6.44 137.64 0.89 4.99 16 22 C 0.25 4.78 0.77 -10.82 -0.01 4.78 16 23 O -0.52 -8.11 10.64 -148.98 -1.58 -9.69 16 24 C -0.12 -1.79 4.96 30.81 0.15 -1.64 16 25 C -0.05 -0.73 7.38 72.22 0.53 -0.19 16 26 S -0.30 -5.71 23.13 -56.49 -1.31 -7.02 16 27 C -0.08 -1.56 6.19 72.72 0.45 -1.11 16 28 H 0.11 1.06 7.84 -2.91 -0.02 1.04 16 29 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.10 2.04 6.88 -2.91 -0.02 2.02 16 31 H 0.12 1.79 5.69 -2.39 -0.01 1.77 16 32 H 0.10 2.18 7.16 -2.39 -0.02 2.16 16 33 H 0.10 2.64 3.74 -2.39 -0.01 2.63 16 34 H 0.09 3.37 6.10 -2.39 -0.01 3.35 16 35 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 2.45 5.43 -2.38 -0.01 2.43 16 38 H 0.06 3.59 6.07 -2.39 -0.01 3.57 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.39 5.09 9.00 -74.06 -0.67 4.43 16 41 H 0.08 1.43 7.79 -2.39 -0.02 1.42 16 42 H 0.11 1.31 6.67 -2.38 -0.02 1.29 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.12 2.29 8.10 -2.39 -0.02 2.27 16 46 H 0.10 2.38 7.73 -2.39 -0.02 2.36 16 Total: -1.00 -70.96 366.78 1.69 -69.27 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.35 Total: 18.96 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.79 Total: 4.94 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.59 Total: -121.05 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.58 Total: -9.69 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.31 Total: -7.02 kcal Total: -70.96 1.69 -69.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338661683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.432 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds