Wall clock time and date at job start Tue Mar 31 2020 20:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50708 * 119.99695 * 2 1 4 4 N 1.46497 * 109.46694 * 123.70872 * 3 2 1 5 5 C 1.36450 * 127.14018 * 273.00970 * 4 3 2 6 6 N 1.38578 * 126.47332 * 0.03935 * 5 4 3 7 7 C 1.46904 * 111.00033 * 117.64604 * 6 5 4 8 8 C 1.46894 * 111.00378 * 241.60205 * 6 5 4 9 9 H 1.09001 * 109.47509 * 300.00409 * 8 6 5 10 10 C 1.53002 * 109.46967 * 60.00117 * 8 6 5 11 11 C 1.50699 * 109.47574 * 179.97438 * 8 6 5 12 12 H 1.08002 * 119.99723 * 0.02562 * 11 8 6 13 13 C 1.37876 * 120.00278 * 180.02562 * 11 8 6 14 14 N 1.31515 * 120.00078 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99804 * 180.02562 * 13 11 8 16 16 H 1.48493 * 109.47115 * 90.00323 * 15 13 11 17 17 H 1.48501 * 109.46704 * 209.99930 * 15 13 11 18 18 H 1.48494 * 109.47217 * 329.99727 * 15 13 11 19 19 N 1.31221 * 107.05676 * 179.77790 * 5 4 3 20 20 N 1.28531 * 109.85534 * 0.22804 * 19 5 4 21 21 C 1.30290 * 110.05578 * 359.97438 * 20 19 5 22 22 C 1.50699 * 126.34353 * 180.02562 * 21 20 19 23 23 O 1.42908 * 108.82701 * 127.43467 * 22 21 20 24 24 C 1.52335 * 108.86964 * 245.96013 * 22 21 20 25 25 C 1.54258 * 112.58813 * 120.81638 * 24 22 21 26 26 S 1.83957 * 102.57827 * 24.53714 * 25 24 22 27 27 C 1.54259 * 108.87158 * 9.04156 * 22 21 20 28 28 H 1.08002 * 119.99830 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00468 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00371 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46890 * 3.71695 * 3 2 1 32 32 H 1.08998 * 109.47003 * 243.71190 * 3 2 1 33 33 H 1.09001 * 109.47281 * 180.85969 * 7 6 5 34 34 H 1.08992 * 109.47302 * 300.86429 * 7 6 5 35 35 H 1.09003 * 109.46662 * 60.86252 * 7 6 5 36 36 H 1.08998 * 109.47388 * 180.02562 * 10 8 6 37 37 H 1.09000 * 109.47212 * 299.99555 * 10 8 6 38 38 H 1.08995 * 109.47168 * 59.99972 * 10 8 6 39 39 H 0.96994 * 119.99782 * 179.97438 * 14 13 11 40 40 H 0.96691 * 113.99762 * 297.78930 * 23 22 21 41 41 H 1.08993 * 108.87413 * 241.64333 * 24 22 21 42 42 H 1.09003 * 108.86671 * 0.15195 * 24 22 21 43 43 H 1.09003 * 110.78511 * 142.80459 * 25 24 22 44 44 H 1.08992 * 110.79365 * 266.07465 * 25 24 22 45 45 H 1.08996 * 110.78614 * 332.92299 * 27 22 21 46 46 H 1.08995 * 110.78672 * 96.38296 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9714 1.3448 1.1490 5 6 2.6817 1.7669 2.4138 6 7 1.4610 2.2443 2.8635 7 6 0.9128 1.3789 3.9164 8 6 1.5781 3.6321 3.3307 9 1 2.2956 3.6804 4.1499 10 6 2.0578 4.5188 2.1798 11 6 0.2339 4.1160 3.8103 12 1 -0.6218 3.4581 3.7723 13 6 0.0965 5.3984 4.2976 14 7 1.1386 6.1993 4.3444 15 14 -1.5696 5.9978 4.8928 16 1 -1.7154 5.6984 6.3399 17 1 -1.6741 7.4634 4.6775 18 1 -2.6438 5.3083 4.1339 19 7 3.7757 1.6301 3.1253 20 7 4.7188 1.1591 2.3898 21 6 4.2858 0.9687 1.1758 22 6 5.0843 0.4290 0.0173 23 8 4.3738 -0.6676 -0.5614 24 6 5.2359 1.5251 -1.0297 25 6 6.7118 1.8676 -1.3194 26 16 7.5832 0.3187 -0.8446 27 6 6.4422 -0.0813 0.5419 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3570 2.1325 0.0666 32 1 2.6393 1.3923 -0.9214 33 1 -0.0524 1.7680 4.2407 34 1 0.7851 0.3691 3.5269 35 1 1.5989 1.3578 4.7631 36 1 2.1452 5.5485 2.5265 37 1 3.0300 4.1691 1.8325 38 1 1.3404 4.4705 1.3606 39 1 1.0418 7.1016 4.6868 40 1 4.2453 -1.4140 0.0397 41 1 4.7620 1.1971 -1.9547 42 1 4.7309 2.4236 -0.6750 43 1 6.8580 2.0849 -2.3775 44 1 7.0425 2.7049 -0.7050 45 1 6.7321 0.4516 1.4474 46 1 6.4096 -1.1564 0.7180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338661684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:14 Heat of formation + Delta-G solvation = 56.529763 kcal Electronic energy + Delta-G solvation = -28902.024681 eV Core-core repulsion = 25148.037743 eV Total energy + Delta-G solvation = -3753.986938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.14097 -39.68280 -38.65043 -37.01995 -34.98087 -34.76209 -33.64121 -31.73747 -31.19198 -29.62111 -27.91723 -27.40010 -26.57348 -26.10958 -23.52045 -23.29036 -21.61568 -20.98730 -20.79014 -18.98008 -18.51789 -17.95471 -17.65307 -17.35082 -16.95937 -16.45578 -16.37235 -15.87404 -15.74583 -15.40300 -15.12977 -14.99287 -14.57721 -14.23027 -13.85348 -13.75716 -13.67232 -13.25734 -13.23016 -13.05779 -12.95283 -12.88382 -12.73458 -12.65889 -12.47240 -12.37514 -12.24799 -12.19444 -12.06649 -11.76304 -11.55923 -11.12773 -11.06604 -11.03524 -10.59709 -10.45987 -10.10305 -9.56394 -8.77287 -8.15661 -6.29699 0.62942 0.72092 0.94136 1.17906 1.45585 1.46124 1.56569 1.66716 1.70350 2.41228 2.76058 2.90494 3.07304 3.16602 3.19613 3.69820 3.71193 3.86211 3.93228 3.97784 4.12441 4.21807 4.28641 4.35152 4.55244 4.59110 4.60123 4.65611 4.67191 4.72950 4.78122 4.80831 4.82617 4.88122 4.95137 5.02616 5.06985 5.34377 5.49469 5.61302 5.63818 5.75220 5.85012 5.94753 6.12571 6.43052 6.59332 6.80877 7.39776 7.65386 8.91474 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003488 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.931243 B = 8026.205406 C = 8702.250222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.181 4.181 3 C 0.140 3.860 4 N -0.442 5.442 5 C 0.374 3.626 6 N -0.462 5.462 7 C 0.055 3.945 8 C 0.235 3.765 9 H -0.030 1.030 10 C -0.110 4.110 11 C -0.521 4.521 12 H 0.075 0.925 13 C 0.015 3.985 14 N -0.921 5.921 15 Si 0.967 3.033 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.260 1.260 19 N -0.360 5.360 20 N -0.305 5.305 21 C 0.140 3.860 22 C 0.248 3.752 23 O -0.533 6.533 24 C -0.119 4.119 25 C -0.056 4.056 26 S -0.297 6.297 27 C -0.080 4.080 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.015 0.985 36 H 0.066 0.934 37 H -0.001 1.001 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.395 0.605 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.137 0.863 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -13.588 -14.631 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 C 0.019 3.981 4 N -0.133 5.133 5 C 0.017 3.983 6 N -0.188 5.188 7 C -0.093 4.093 8 C 0.129 3.871 9 H -0.013 1.013 10 C -0.169 4.169 11 C -0.559 4.559 12 H 0.093 0.907 13 C -0.185 4.185 14 N -0.560 5.560 15 Si 0.792 3.208 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.184 1.184 19 N -0.204 5.204 20 N -0.147 5.147 21 C -0.131 4.131 22 C 0.202 3.798 23 O -0.339 6.339 24 C -0.158 4.158 25 C -0.204 4.204 26 S -0.070 6.070 27 C -0.229 4.229 28 H 0.140 0.860 29 H 0.115 0.885 30 H 0.142 0.858 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.155 0.845 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.166 -13.565 -14.803 20.732 hybrid contribution -1.854 1.044 1.452 2.576 sum 3.311 -12.522 -13.351 18.601 Atomic orbital electron populations 1.24134 0.95524 1.03165 0.95736 1.22897 0.96279 0.96960 1.03876 1.21142 0.92287 0.98664 0.85997 1.46443 1.10375 1.46455 1.10068 1.22767 0.93077 0.98724 0.83745 1.59164 1.15894 1.04722 1.39035 1.22202 1.00444 0.95404 0.91232 1.19086 0.96053 0.80531 0.91413 1.01250 1.21554 0.95439 1.02087 0.97802 1.21317 0.94483 0.98507 1.41607 0.90711 1.25751 1.00415 0.96717 0.95586 1.70042 1.31395 1.07908 1.46673 0.85411 0.79599 0.77217 0.78553 1.20383 1.21207 1.18427 1.74632 0.98381 1.20266 1.27114 1.73823 1.23607 1.16542 1.00743 1.25900 0.83615 1.05320 0.98228 1.19896 0.87419 0.87377 0.85138 1.86631 1.77119 1.27503 1.42647 1.22022 0.97546 0.96329 0.99913 1.24210 0.93234 0.95967 1.07003 1.88031 1.44887 1.32358 1.41763 1.24807 0.92612 1.06559 0.98912 0.86038 0.88466 0.85794 0.89186 0.86441 0.89097 0.91056 0.96669 0.91493 0.98219 0.93934 0.92780 0.75463 0.86255 0.90713 0.84538 0.88964 0.88177 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 14.32 67.78 0.97 -1.79 16 2 C -0.18 -3.63 9.71 25.65 0.25 -3.38 16 3 C 0.14 3.37 6.02 85.64 0.52 3.88 16 4 N -0.44 -13.68 2.79 -518.91 -1.45 -15.13 16 5 C 0.37 14.97 5.04 260.11 1.31 16.28 16 6 N -0.46 -19.49 4.66 -711.01 -3.31 -22.80 16 7 C 0.05 2.11 9.21 127.69 1.18 3.29 16 8 C 0.23 11.95 2.01 44.17 0.09 12.03 16 9 H -0.03 -1.82 8.12 -2.39 -0.02 -1.84 16 10 C -0.11 -5.46 8.84 71.98 0.64 -4.82 16 11 C -0.52 -27.14 7.89 25.60 0.20 -26.93 16 12 H 0.07 3.71 6.40 -2.91 -0.02 3.69 16 13 C 0.01 0.78 5.30 84.65 0.45 1.23 16 14 N -0.92 -52.32 11.32 21.45 0.24 -52.07 16 15 Si 0.97 41.67 29.54 68.60 2.03 43.69 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 N -0.36 -15.95 12.16 -58.01 -0.71 -16.65 16 20 N -0.31 -11.53 10.84 -49.54 -0.54 -12.07 16 21 C 0.14 4.11 6.17 137.64 0.85 4.96 16 22 C 0.25 5.10 0.89 -11.33 -0.01 5.09 16 23 O -0.53 -8.60 11.54 -148.98 -1.72 -10.32 16 24 C -0.12 -2.16 4.60 30.80 0.14 -2.02 16 25 C -0.06 -0.94 7.46 72.41 0.54 -0.40 16 26 S -0.30 -6.09 23.27 -56.49 -1.31 -7.41 16 27 C -0.08 -1.65 6.49 72.41 0.47 -1.18 16 28 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.10 1.98 7.84 -2.91 -0.02 1.96 16 30 H 0.12 2.17 7.56 -2.91 -0.02 2.15 16 31 H 0.09 2.46 7.79 -2.39 -0.02 2.44 16 32 H 0.12 2.28 6.67 -2.39 -0.02 2.26 16 33 H 0.09 3.49 6.13 -2.39 -0.01 3.48 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 37 H 0.00 -0.06 7.22 -2.39 -0.02 -0.08 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 39 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.39 4.46 8.86 -74.06 -0.66 3.80 16 41 H 0.12 1.76 7.82 -2.39 -0.02 1.74 16 42 H 0.07 1.59 7.45 -2.39 -0.02 1.57 16 43 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.10 2.55 6.98 -2.39 -0.02 2.53 16 46 H 0.13 2.18 7.90 -2.39 -0.02 2.17 16 Total: -1.00 -67.50 381.26 1.16 -66.34 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.34 Total: 20.20 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 7.59 Total: 6.23 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -5.76 Total: -118.73 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.72 Total: -10.32 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -1.31 Total: -7.41 kcal Total: -67.50 1.16 -66.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338661684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.867 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds