Wall clock time and date at job start Tue Mar 31 2020 20:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99832 * 2 1 4 4 N 1.46495 * 109.47154 * 126.50616 * 3 2 1 5 5 C 1.37590 * 127.16293 * 264.49455 * 4 3 2 6 6 C 1.47801 * 126.46264 * 0.03229 * 5 4 3 7 7 C 1.40059 * 120.88760 * 19.33058 * 6 5 4 8 8 C 1.38133 * 119.21666 * 179.97438 * 7 6 5 9 9 N 1.31690 * 121.07037 * 0.02562 * 8 7 6 10 10 C 1.32893 * 121.95109 * 359.97438 * 9 8 7 11 11 C 1.43194 * 119.66995 * 180.02562 * 10 9 8 12 12 N 8.54137 * 84.99025 * 49.02681 * 2 1 3 13 13 C 1.39175 * 120.65309 * 359.72451 * 10 9 8 14 14 N 1.31283 * 107.07149 * 179.89857 * 5 4 3 15 15 N 1.28518 * 109.90874 * 0.37627 * 14 5 4 16 16 C 1.31477 * 110.07125 * 359.76336 * 15 14 5 17 17 N 1.38297 * 126.36852 * 179.97438 * 16 15 14 18 18 C 1.46896 * 110.99814 * 245.95320 * 17 16 15 19 19 C 1.46890 * 111.00054 * 9.91172 * 17 16 15 20 20 H 1.09002 * 109.47187 * 55.00161 * 19 17 16 21 21 C 1.53000 * 109.47154 * 294.99915 * 19 17 16 22 22 C 1.50699 * 109.47209 * 174.99816 * 19 17 16 23 23 H 1.07998 * 120.00009 * 359.97438 * 22 19 17 24 24 C 1.37880 * 120.00435 * 179.97438 * 22 19 17 25 25 N 1.31513 * 119.99632 * 0.02562 * 24 22 19 26 26 Si 1.86794 * 120.00477 * 180.02562 * 24 22 19 27 27 H 1.48504 * 109.47115 * 59.99876 * 26 24 22 28 28 H 1.48502 * 109.47427 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47369 * 300.00238 * 26 24 22 30 30 H 1.08000 * 120.00387 * 5.30296 * 1 2 3 31 31 H 1.08001 * 119.99500 * 185.29830 * 1 2 3 32 32 H 1.08004 * 120.00699 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46865 * 6.50729 * 3 2 1 34 34 H 1.09005 * 109.47193 * 246.51062 * 3 2 1 35 35 H 1.07997 * 120.38548 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.46865 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.55909 * 180.28896 * 13 10 9 38 38 H 1.09000 * 109.46743 * 61.59457 * 18 17 16 39 39 H 1.09005 * 109.47253 * 181.58914 * 18 17 16 40 40 H 1.08999 * 109.47580 * 301.59230 * 18 17 16 41 41 H 1.08998 * 109.47040 * 180.02562 * 21 19 17 42 42 H 1.08995 * 109.46896 * 300.00104 * 21 19 17 43 43 H 1.08994 * 109.47201 * 59.99962 * 21 19 17 44 44 H 0.97002 * 120.00056 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0192 1.3172 1.1102 5 6 2.8332 1.8591 2.3612 6 6 1.6193 2.5469 2.8489 7 6 0.3860 2.3688 2.2094 8 6 -0.7265 3.0281 2.6947 9 7 -0.6440 3.8183 3.7450 10 6 0.5030 4.0192 4.3854 11 6 0.5369 4.8885 5.5228 12 7 0.5641 5.5792 6.4242 13 6 1.6702 3.3882 3.9654 14 7 3.9363 1.6473 3.0408 15 7 4.7896 1.0260 2.3076 16 6 4.2807 0.7991 1.1167 17 7 4.9081 0.1550 0.0659 18 6 5.1436 1.0783 -1.0521 19 6 6.1624 -0.4705 0.5054 20 1 5.9620 -1.1350 1.3459 21 6 7.1497 0.6154 0.9378 22 6 6.7538 -1.2632 -0.6317 23 1 6.2482 -1.2990 -1.5853 24 6 7.9404 -1.9427 -0.4546 25 7 8.5558 -1.8994 0.7068 26 14 8.6738 -2.9246 -1.8643 27 1 8.9464 -2.0190 -3.0092 28 1 9.9424 -3.5561 -1.4203 29 1 7.7160 -3.9789 -2.2842 30 1 -0.5401 0.9313 -0.0864 31 1 -0.5399 -0.9314 0.0864 32 1 1.8501 -0.9353 0.0004 33 1 1.3608 2.1303 0.1165 34 1 2.5999 1.4150 -0.9425 35 1 0.3058 1.7230 1.3475 36 1 -1.6795 2.8940 2.2045 37 1 2.6006 3.5490 4.4898 38 1 5.8000 1.8848 -0.7251 39 1 5.6125 0.5396 -1.8756 40 1 4.1934 1.4956 -1.3852 41 1 8.0806 0.1512 1.2635 42 1 7.3500 1.2798 0.0973 43 1 6.7220 1.1887 1.7602 44 1 9.3905 -2.3777 0.8315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339003355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:57 Heat of formation + Delta-G solvation = 209.717185 kcal Electronic energy + Delta-G solvation = -28725.150339 eV Core-core repulsion = 24874.654906 eV Total energy + Delta-G solvation = -3850.495433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.80539 -40.62256 -37.56083 -36.93891 -36.48371 -33.78280 -33.15408 -32.53270 -32.05095 -29.38174 -28.82729 -27.27620 -25.64557 -25.29693 -24.93488 -24.44286 -21.87759 -21.66016 -20.58816 -19.66124 -19.22860 -17.26585 -16.86693 -16.72935 -16.13858 -16.05619 -15.77932 -15.21560 -15.06565 -14.98441 -14.71911 -14.38173 -13.85992 -13.77291 -13.59204 -13.44153 -13.22966 -13.11390 -12.84485 -12.50538 -12.37309 -11.79490 -11.72310 -11.51646 -11.29863 -10.99916 -10.92981 -10.86090 -10.56147 -10.40583 -10.22034 -10.14028 -10.05267 -9.93405 -9.82873 -9.64180 -8.99261 -8.95570 -8.49240 -7.59838 -6.12125 -4.20422 0.06656 0.45803 1.61543 1.98488 2.20332 2.44158 2.56245 3.10660 3.16193 3.23962 3.30095 3.30664 3.54254 3.84489 4.17211 4.19601 4.29195 4.39671 4.44561 4.45699 4.53022 4.68690 4.87539 5.01443 5.12912 5.19384 5.20723 5.35523 5.41135 5.56833 5.68315 5.88080 5.91410 5.98491 6.02055 6.20033 6.23904 6.31842 6.57355 6.76851 6.98309 7.03234 7.15123 7.28479 7.28721 7.48644 7.62425 7.83495 8.18733 8.30291 8.79225 8.99630 9.44633 10.93977 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.002872 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.382039 B = 9745.770529 C =10874.307027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.166 4.166 3 C 0.125 3.875 4 N -0.474 5.474 5 C 0.161 3.839 6 C 0.064 3.936 7 C -0.161 4.161 8 C 0.118 3.882 9 N -0.453 5.453 10 C 0.197 3.803 11 C 0.270 3.730 12 N -0.387 5.387 13 C -0.086 4.086 14 N -0.247 5.247 15 N -0.305 5.305 16 C 0.406 3.594 17 N -0.453 5.453 18 C 0.032 3.968 19 C 0.229 3.771 20 H 0.052 0.948 21 C -0.178 4.178 22 C -0.518 4.518 23 H 0.064 0.936 24 C 0.065 3.935 25 N -0.883 5.883 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.040 0.960 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.022 0.978 43 H 0.047 0.953 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.153 7.903 -3.202 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.185 4.185 3 C 0.003 3.997 4 N -0.170 5.170 5 C -0.102 4.102 6 C 0.053 3.947 7 C -0.183 4.183 8 C -0.041 4.041 9 N -0.164 5.164 10 C 0.060 3.940 11 C -0.048 4.048 12 N -0.063 5.063 13 C -0.111 4.111 14 N -0.089 5.089 15 N -0.151 5.151 16 C 0.052 3.948 17 N -0.176 5.176 18 C -0.115 4.115 19 C 0.125 3.875 20 H 0.070 0.930 21 C -0.237 4.237 22 C -0.556 4.556 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.520 5.520 26 Si 0.728 3.272 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.177 0.823 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.934 8.916 -0.497 20.034 hybrid contribution 0.740 -1.001 -2.363 2.672 sum -17.194 7.915 -2.861 19.143 Atomic orbital electron populations 1.23944 0.95399 1.02699 0.99591 1.23248 0.96184 0.98769 1.00250 1.21233 0.91642 0.97298 0.89566 1.46162 1.12952 1.45921 1.11959 1.21935 0.97643 1.06546 0.84028 1.17587 0.89484 0.93658 0.93990 1.23021 0.92438 1.00850 1.02039 1.22630 0.98657 0.91422 0.91402 1.67517 1.25859 1.15506 1.07551 1.16128 0.90078 0.95816 0.92011 1.24852 0.93959 0.93326 0.92614 1.81259 1.06653 1.08506 1.09893 1.22065 0.99432 0.94095 0.95502 1.74349 0.97608 1.12094 1.24871 1.75071 1.20661 1.17936 1.01463 1.23335 0.83116 0.93273 0.95099 1.59295 1.29289 1.25626 1.03377 1.22454 0.99484 0.95315 0.94254 1.19417 0.79598 0.91728 0.96771 0.92993 1.22522 1.03903 0.98557 0.98751 1.20953 1.06576 1.30477 0.97642 0.91820 1.24889 0.96645 0.96352 0.95907 1.69901 1.17460 1.41950 1.22710 0.86530 0.78432 0.80196 0.82047 1.20255 1.21217 1.20191 0.88024 0.87183 0.85423 0.88239 0.87119 0.82834 0.80976 0.82309 0.94123 0.88296 0.93433 0.89056 0.95885 0.93387 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 12.90 29.02 0.37 -0.75 16 2 C -0.17 -1.53 9.59 -36.02 -0.35 -1.87 16 3 C 0.12 1.21 5.71 -5.19 -0.03 1.18 16 4 N -0.47 -6.77 2.81 -116.00 -0.33 -7.10 16 5 C 0.16 2.36 7.72 -153.75 -1.19 1.17 16 6 C 0.06 0.69 5.89 -104.68 -0.62 0.08 16 7 C -0.16 -1.26 8.71 -38.94 -0.34 -1.60 16 8 C 0.12 0.80 11.16 -17.65 -0.20 0.60 16 9 N -0.45 -4.26 10.26 -11.27 -0.12 -4.37 16 10 C 0.20 1.98 6.58 -85.14 -0.56 1.42 16 11 C 0.27 3.05 15.53 -22.48 -0.35 2.70 16 12 N -0.39 -5.03 18.54 41.84 0.78 -4.26 16 13 C -0.09 -0.89 9.49 -38.61 -0.37 -1.26 16 14 N -0.25 -4.55 12.10 32.59 0.39 -4.15 16 15 N -0.30 -6.37 9.02 30.29 0.27 -6.09 16 16 C 0.41 7.55 6.70 -319.06 -2.14 5.41 16 17 N -0.45 -8.84 4.77 -176.14 -0.84 -9.68 16 18 C 0.03 0.52 8.70 60.06 0.52 1.04 16 19 C 0.23 5.47 2.05 -68.87 -0.14 5.33 16 20 H 0.05 1.44 8.08 -51.93 -0.42 1.02 16 21 C -0.18 -4.26 8.26 37.16 0.31 -3.95 16 22 C -0.52 -13.07 7.91 -34.44 -0.27 -13.34 16 23 H 0.06 1.55 6.76 -52.49 -0.35 1.19 16 24 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 25 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 26 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.10 0.39 6.94 -52.49 -0.36 0.02 16 31 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.10 0.68 5.48 -51.93 -0.28 0.40 16 34 H 0.11 1.04 5.44 -51.93 -0.28 0.75 16 35 H 0.15 0.99 2.12 -52.49 -0.11 0.88 16 36 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.16 1.63 8.05 -52.48 -0.42 1.20 16 38 H 0.04 0.70 6.42 -51.93 -0.33 0.37 16 39 H 0.10 1.69 6.46 -51.93 -0.34 1.35 16 40 H 0.05 0.60 5.36 -51.93 -0.28 0.33 16 41 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 42 H 0.02 0.51 6.44 -51.93 -0.33 0.18 16 43 H 0.05 1.13 5.52 -51.93 -0.29 0.84 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -31.03 363.48 -8.71 -39.74 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.53 Total: 1.22 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -5.43 Total: -2.24 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.79 Total: -59.28 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.03 -8.71 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339003355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.461 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds