Wall clock time and date at job start Tue Mar 31 2020 20:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99832 * 2 1 4 4 N 1.46495 * 109.47154 * 126.50616 * 3 2 1 5 5 C 1.37590 * 127.16293 * 264.49455 * 4 3 2 6 6 C 1.47801 * 126.46264 * 0.03229 * 5 4 3 7 7 C 1.40059 * 120.88760 * 19.33058 * 6 5 4 8 8 C 1.38133 * 119.21666 * 179.97438 * 7 6 5 9 9 N 1.31690 * 121.07037 * 0.02562 * 8 7 6 10 10 C 1.32893 * 121.95109 * 359.97438 * 9 8 7 11 11 C 1.43194 * 119.66995 * 180.02562 * 10 9 8 12 12 N 8.54137 * 84.99025 * 49.02681 * 2 1 3 13 13 C 1.39175 * 120.65309 * 359.72451 * 10 9 8 14 14 N 1.31283 * 107.07149 * 179.89857 * 5 4 3 15 15 N 1.28518 * 109.90874 * 0.37627 * 14 5 4 16 16 C 1.31477 * 110.07125 * 359.76336 * 15 14 5 17 17 N 1.38297 * 126.36852 * 179.97438 * 16 15 14 18 18 C 1.46896 * 110.99814 * 245.95320 * 17 16 15 19 19 C 1.46890 * 111.00054 * 9.91172 * 17 16 15 20 20 H 1.09002 * 109.47187 * 55.00161 * 19 17 16 21 21 C 1.53000 * 109.47154 * 294.99915 * 19 17 16 22 22 C 1.50699 * 109.47209 * 174.99816 * 19 17 16 23 23 H 1.07998 * 120.00009 * 359.97438 * 22 19 17 24 24 C 1.37880 * 120.00435 * 179.97438 * 22 19 17 25 25 N 1.31513 * 119.99632 * 0.02562 * 24 22 19 26 26 Si 1.86794 * 120.00477 * 180.02562 * 24 22 19 27 27 H 1.48504 * 109.47115 * 59.99876 * 26 24 22 28 28 H 1.48502 * 109.47427 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47369 * 300.00238 * 26 24 22 30 30 H 1.08000 * 120.00387 * 5.30296 * 1 2 3 31 31 H 1.08001 * 119.99500 * 185.29830 * 1 2 3 32 32 H 1.08004 * 120.00699 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.46865 * 6.50729 * 3 2 1 34 34 H 1.09005 * 109.47193 * 246.51062 * 3 2 1 35 35 H 1.07997 * 120.38548 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.46865 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.55909 * 180.28896 * 13 10 9 38 38 H 1.09000 * 109.46743 * 61.59457 * 18 17 16 39 39 H 1.09005 * 109.47253 * 181.58914 * 18 17 16 40 40 H 1.08999 * 109.47580 * 301.59230 * 18 17 16 41 41 H 1.08998 * 109.47040 * 180.02562 * 21 19 17 42 42 H 1.08995 * 109.46896 * 300.00104 * 21 19 17 43 43 H 1.08994 * 109.47201 * 59.99962 * 21 19 17 44 44 H 0.97002 * 120.00056 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0192 1.3172 1.1102 5 6 2.8332 1.8591 2.3612 6 6 1.6193 2.5469 2.8489 7 6 0.3860 2.3688 2.2094 8 6 -0.7265 3.0281 2.6947 9 7 -0.6440 3.8183 3.7450 10 6 0.5030 4.0192 4.3854 11 6 0.5369 4.8885 5.5228 12 7 0.5641 5.5792 6.4242 13 6 1.6702 3.3882 3.9654 14 7 3.9363 1.6473 3.0408 15 7 4.7896 1.0260 2.3076 16 6 4.2807 0.7991 1.1167 17 7 4.9081 0.1550 0.0659 18 6 5.1436 1.0783 -1.0521 19 6 6.1624 -0.4705 0.5054 20 1 5.9620 -1.1350 1.3459 21 6 7.1497 0.6154 0.9378 22 6 6.7538 -1.2632 -0.6317 23 1 6.2482 -1.2990 -1.5853 24 6 7.9404 -1.9427 -0.4546 25 7 8.5558 -1.8994 0.7068 26 14 8.6738 -2.9246 -1.8643 27 1 8.9464 -2.0190 -3.0092 28 1 9.9424 -3.5561 -1.4203 29 1 7.7160 -3.9789 -2.2842 30 1 -0.5401 0.9313 -0.0864 31 1 -0.5399 -0.9314 0.0864 32 1 1.8501 -0.9353 0.0004 33 1 1.3608 2.1303 0.1165 34 1 2.5999 1.4150 -0.9425 35 1 0.3058 1.7230 1.3475 36 1 -1.6795 2.8940 2.2045 37 1 2.6006 3.5490 4.4898 38 1 5.8000 1.8848 -0.7251 39 1 5.6125 0.5396 -1.8756 40 1 4.1934 1.4956 -1.3852 41 1 8.0806 0.1512 1.2635 42 1 7.3500 1.2798 0.0973 43 1 6.7220 1.1887 1.7602 44 1 9.3905 -2.3777 0.8315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339003355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:56 Heat of formation + Delta-G solvation = 192.167873 kcal Electronic energy + Delta-G solvation = -28725.911335 eV Core-core repulsion = 24874.654906 eV Total energy + Delta-G solvation = -3851.256428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.05617 -41.40117 -39.13491 -37.86127 -37.39337 -35.04087 -34.42885 -33.71738 -32.79612 -30.90868 -30.36521 -28.20785 -27.28638 -26.79000 -25.89102 -25.37721 -23.39616 -22.65588 -21.56237 -20.80560 -20.26725 -18.43936 -18.02448 -17.69092 -17.52667 -17.32633 -16.94310 -16.45032 -16.26792 -15.91778 -15.82679 -15.36186 -15.03677 -14.99144 -14.63169 -14.45450 -14.33695 -14.06250 -14.04187 -13.62051 -13.43732 -13.25693 -13.10032 -12.93049 -12.66038 -12.59894 -12.41231 -12.25277 -12.10712 -11.99650 -11.74093 -11.48678 -11.15709 -10.89153 -10.87403 -10.49238 -10.46218 -10.34405 -10.30339 -9.06983 -8.11239 -6.26428 -0.73066 -0.34070 0.82264 0.89958 1.33466 1.45967 1.48135 1.52615 1.56242 1.60671 1.90262 2.31245 2.42615 2.74183 2.83649 3.06204 3.18848 3.45589 3.57342 3.65333 3.74371 3.79658 3.86161 3.99613 4.06367 4.31032 4.43814 4.49370 4.52895 4.56704 4.65874 4.69215 4.82399 4.97120 5.02042 5.05876 5.11234 5.23391 5.32881 5.35276 5.55043 5.60391 5.62499 5.70194 5.81209 6.00736 6.16595 6.22119 6.54454 6.58578 6.82751 7.42562 7.67519 8.94926 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.002872 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.382039 B = 9745.770529 C =10874.307027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.203 4.203 3 C 0.117 3.883 4 N -0.462 5.462 5 C 0.191 3.809 6 C 0.038 3.962 7 C -0.133 4.133 8 C 0.136 3.864 9 N -0.459 5.459 10 C 0.193 3.807 11 C 0.287 3.713 12 N -0.424 5.424 13 C -0.083 4.083 14 N -0.295 5.295 15 N -0.356 5.356 16 C 0.386 3.614 17 N -0.453 5.453 18 C 0.033 3.967 19 C 0.242 3.758 20 H 0.002 0.998 21 C -0.161 4.161 22 C -0.524 4.524 23 H 0.074 0.926 24 C 0.013 3.987 25 N -0.919 5.919 26 Si 0.967 3.033 27 H -0.265 1.265 28 H -0.290 1.290 29 H -0.270 1.270 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.173 0.827 36 H 0.224 0.776 37 H 0.150 0.850 38 H 0.028 0.972 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.439 8.678 -5.836 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.223 4.223 3 C -0.002 4.002 4 N -0.157 5.157 5 C -0.074 4.074 6 C 0.028 3.972 7 C -0.155 4.155 8 C -0.024 4.024 9 N -0.170 5.170 10 C 0.057 3.943 11 C -0.030 4.030 12 N -0.100 5.100 13 C -0.108 4.108 14 N -0.136 5.136 15 N -0.202 5.202 16 C 0.029 3.971 17 N -0.176 5.176 18 C -0.114 4.114 19 C 0.136 3.864 20 H 0.020 0.980 21 C -0.220 4.220 22 C -0.562 4.562 23 H 0.092 0.908 24 C -0.187 4.187 25 N -0.558 5.558 26 Si 0.792 3.208 27 H -0.189 1.189 28 H -0.216 1.216 29 H -0.195 1.195 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.190 0.810 36 H 0.241 0.759 37 H 0.168 0.832 38 H 0.047 0.953 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.251 9.714 -3.138 24.481 hybrid contribution 1.772 -1.186 -1.520 2.619 sum -20.479 8.528 -4.658 22.667 Atomic orbital electron populations 1.24318 0.94087 1.04941 0.94456 1.22961 0.97222 0.97064 1.05004 1.21666 0.91467 0.99054 0.88042 1.46350 1.12056 1.44386 1.12890 1.22566 0.97488 1.03859 0.83450 1.17610 0.89308 0.94986 0.95310 1.23227 0.91074 0.99726 1.01439 1.23439 0.99970 0.89077 0.89870 1.67594 1.25162 1.15965 1.08244 1.15934 0.90287 0.96075 0.92031 1.25050 0.92872 0.92714 0.92365 1.81271 1.07827 1.09856 1.11078 1.21954 0.99397 0.94116 0.95340 1.74237 0.99174 1.14231 1.25944 1.74877 1.22989 1.19406 1.02882 1.23098 0.84770 0.94807 0.94387 1.59130 1.27134 1.27068 1.04232 1.22536 1.01621 0.94323 0.92880 1.18928 0.81446 0.91152 0.94847 0.98005 1.22305 1.02441 0.98452 0.98838 1.21288 1.06565 1.30189 0.98160 0.90836 1.25767 0.97233 0.97469 0.98213 1.70076 1.17792 1.43031 1.24876 0.85472 0.77303 0.78849 0.79159 1.18939 1.21623 1.19483 0.84080 0.86391 0.89002 0.84393 0.86831 0.81019 0.75938 0.83246 0.95335 0.88910 0.89169 0.92156 0.95135 0.93548 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 12.90 67.78 0.87 -0.15 16 2 C -0.20 -3.18 9.59 25.65 0.25 -2.94 16 3 C 0.12 1.91 5.71 85.64 0.49 2.40 16 4 N -0.46 -12.80 2.81 -520.92 -1.47 -14.27 16 5 C 0.19 5.50 7.72 136.19 1.05 6.56 16 6 C 0.04 0.74 5.89 -19.90 -0.12 0.63 16 7 C -0.13 -1.38 8.71 22.69 0.20 -1.18 16 8 C 0.14 1.01 11.16 84.69 0.95 1.96 16 9 N -0.46 -6.70 10.26 -189.57 -1.95 -8.64 16 10 C 0.19 3.46 6.58 40.45 0.27 3.73 16 11 C 0.29 6.22 15.53 88.33 1.37 7.59 16 12 N -0.42 -10.93 18.54 19.00 0.35 -10.58 16 13 C -0.08 -1.62 9.49 22.90 0.22 -1.40 16 14 N -0.30 -11.38 12.10 -50.81 -0.61 -11.99 16 15 N -0.36 -15.82 9.02 -58.09 -0.52 -16.34 16 16 C 0.39 14.83 6.70 260.18 1.74 16.57 16 17 N -0.45 -18.26 4.77 -711.17 -3.39 -21.65 16 18 C 0.03 1.07 8.70 127.69 1.11 2.18 16 19 C 0.24 12.25 2.05 44.17 0.09 12.35 16 20 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 21 C -0.16 -8.20 8.26 71.98 0.59 -7.60 16 22 C -0.52 -27.21 7.91 25.60 0.20 -27.01 16 23 H 0.07 3.59 6.76 -2.91 -0.02 3.57 16 24 C 0.01 0.68 5.30 84.66 0.45 1.13 16 25 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 26 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.14 -0.07 6.94 -2.91 -0.02 -0.09 16 31 H 0.12 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.09 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 1.11 5.48 -2.39 -0.01 1.10 16 34 H 0.11 1.76 5.44 -2.38 -0.01 1.75 16 35 H 0.17 1.12 2.12 -2.91 -0.01 1.12 16 36 H 0.22 -0.52 8.06 -2.91 -0.02 -0.54 16 37 H 0.15 3.15 8.05 -2.91 -0.02 3.13 16 38 H 0.03 0.99 6.42 -2.39 -0.02 0.97 16 39 H 0.09 3.13 6.46 -2.38 -0.02 3.11 16 40 H 0.09 2.12 5.36 -2.39 -0.01 2.11 16 41 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 42 H 0.03 1.44 6.44 -2.39 -0.02 1.42 16 43 H 0.05 2.35 5.52 -2.39 -0.01 2.34 16 44 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -75.70 363.48 5.49 -70.21 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.08 Total: 7.40 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 9.73 Total: 14.80 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -7.34 Total: -136.21 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -75.70 5.49 -70.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339003355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.373 kcal (2) G-P(sol) polarization free energy of solvation -75.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds