Wall clock time and date at job start Tue Mar 31 2020 21:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46960 * 2 1 4 4 C 1.36737 * 127.13936 * 95.30322 * 3 2 1 5 5 C 1.50702 * 126.34879 * 359.97438 * 4 3 2 6 6 C 1.53004 * 109.46666 * 90.00053 * 5 4 3 7 7 H 1.09002 * 109.47380 * 55.00260 * 6 5 4 8 8 O 1.42901 * 109.47242 * 294.99724 * 6 5 4 9 9 C 1.50699 * 109.46643 * 175.00015 * 6 5 4 10 10 H 1.08001 * 120.00556 * 0.02562 * 9 6 5 11 11 C 1.37882 * 120.00072 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00201 * 180.02562 * 11 9 6 13 13 Si 1.86803 * 119.99749 * 0.02562 * 11 9 6 14 14 H 1.48506 * 109.46843 * 89.99930 * 13 11 9 15 15 H 1.48494 * 109.47079 * 209.99967 * 13 11 9 16 16 H 1.48504 * 109.46912 * 329.99956 * 13 11 9 17 17 N 1.30299 * 107.30173 * 180.23968 * 4 3 2 18 18 N 1.28524 * 110.05626 * 359.55970 * 17 4 3 19 19 C 1.31214 * 109.85938 * 0.45096 * 18 17 4 20 20 N 1.38584 * 126.47710 * 179.69167 * 19 18 17 21 21 C 1.46903 * 110.99825 * 100.59074 * 20 19 18 22 22 C 1.46898 * 110.99751 * 336.64384 * 20 19 18 23 23 C 1.50703 * 109.47153 * 196.37283 * 22 20 19 24 24 C 1.28870 * 121.25086 * 262.70807 * 23 22 20 25 25 C 1.51434 * 117.49667 * 180.02562 * 24 23 22 26 26 S 1.83837 * 102.54078 * 16.28762 * 25 24 23 27 27 C 1.51428 * 121.24529 * 82.42937 * 23 22 20 28 28 H 1.08999 * 109.46966 * 300.00208 * 1 2 3 29 29 H 1.08996 * 109.47215 * 60.00395 * 1 2 3 30 30 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47309 * 239.99555 * 2 1 3 32 32 H 1.09005 * 109.47281 * 119.99333 * 2 1 3 33 33 H 1.09000 * 109.46818 * 209.99878 * 5 4 3 34 34 H 1.08990 * 109.47009 * 330.00002 * 5 4 3 35 35 H 0.96702 * 113.99929 * 300.00704 * 8 6 5 36 36 H 0.96994 * 120.00219 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47236 * 57.66119 * 21 20 19 38 38 H 1.09001 * 109.47223 * 177.66061 * 21 20 19 39 39 H 1.08995 * 109.47324 * 297.66080 * 21 20 19 40 40 H 1.08999 * 109.47081 * 316.37640 * 22 20 19 41 41 H 1.09005 * 109.47320 * 76.37425 * 22 20 19 42 42 H 1.07989 * 121.25559 * 359.97438 * 24 23 22 43 43 H 1.08993 * 110.79314 * 134.55151 * 25 24 23 44 44 H 1.09001 * 110.79241 * 257.83115 * 25 24 23 45 45 H 1.09003 * 110.79447 * 281.97426 * 27 23 22 46 46 H 1.08996 * 110.80029 * 45.44838 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3885 2.1260 1.0854 5 6 2.3711 1.6779 2.5241 6 6 3.7194 1.0470 2.8780 7 1 4.5204 1.7507 2.6516 8 8 3.9027 -0.1458 2.1127 9 6 3.7464 0.7106 4.3467 10 1 2.8878 0.9249 4.9657 11 6 4.8670 0.1282 4.9000 12 7 4.8905 -0.1658 6.1816 13 14 6.3520 -0.2431 3.8292 14 1 7.2658 0.9275 3.8271 15 1 7.0667 -1.4281 4.3678 16 1 5.9038 -0.5238 2.4416 17 7 2.7536 3.2969 0.6456 18 7 2.6489 3.3392 -0.6347 19 6 2.1986 2.1912 -1.0833 20 7 1.9519 1.8635 -2.4070 21 6 3.0492 1.0614 -2.9641 22 6 1.7193 3.0693 -3.2132 23 6 1.0706 2.6839 -4.5178 24 6 1.7669 2.5323 -5.5915 25 6 1.0278 2.1448 -6.8552 26 16 -0.7191 2.5281 -6.4294 27 6 -0.4230 2.4542 -4.6145 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 2.1913 2.5372 3.1701 34 1 1.5780 0.9440 2.6664 35 1 3.2244 -0.8183 2.2639 36 1 5.6789 -0.5751 6.5710 37 1 3.1814 0.1606 -2.3647 38 1 2.8110 0.7830 -3.9907 39 1 3.9695 1.6453 -2.9502 40 1 1.0645 3.7497 -2.6688 41 1 2.6709 3.5624 -3.4123 42 1 2.8370 2.6771 -5.5905 43 1 1.3617 2.7481 -7.6992 44 1 1.1536 1.0829 -7.0668 45 1 -0.6907 1.4759 -4.2155 46 1 -0.9703 3.2453 -4.1020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352766657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:33 Heat of formation + Delta-G solvation = 61.371524 kcal Electronic energy + Delta-G solvation = -27762.071711 eV Core-core repulsion = 24008.294727 eV Total energy + Delta-G solvation = -3753.776984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.75289 -38.88289 -36.75782 -36.22761 -35.31697 -32.37130 -31.67580 -30.53734 -30.05422 -28.66703 -27.94378 -26.50620 -25.39002 -24.24491 -23.58003 -21.62234 -20.61756 -20.06811 -18.76152 -17.68781 -17.20721 -16.86144 -16.54878 -16.03211 -15.45193 -15.13850 -15.03095 -14.85569 -14.71110 -14.21224 -14.09650 -14.06865 -13.63920 -13.33864 -13.19808 -13.01633 -12.80580 -12.52105 -12.39783 -12.33138 -11.93044 -11.88103 -11.83148 -11.49332 -11.28211 -11.18393 -11.03478 -10.88324 -10.47421 -10.41746 -10.25128 -9.90677 -9.66199 -9.39604 -9.15949 -8.77361 -8.59127 -8.15931 -8.12150 -6.22174 -4.34895 1.35671 1.41695 1.85280 1.98236 2.47830 3.11639 3.33590 3.42948 3.65179 3.65892 4.05204 4.22298 4.44842 4.58942 4.64871 4.73504 4.82342 4.88290 4.91927 4.92700 4.97562 5.05479 5.08464 5.15374 5.17161 5.19661 5.33655 5.36078 5.45507 5.48425 5.56356 5.67191 5.75464 5.77454 5.95210 5.97796 6.03519 6.15761 6.23268 6.45543 6.48610 6.74067 7.17954 7.30180 7.44941 8.15198 8.67002 8.83916 9.04223 9.41252 10.87918 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002564 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.547514 B =10916.528054 C =11121.776572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.460 5.460 4 C 0.218 3.782 5 C -0.053 4.053 6 C 0.201 3.799 7 H 0.063 0.937 8 O -0.580 6.580 9 C -0.565 4.565 10 H 0.076 0.924 11 C 0.087 3.913 12 N -0.888 5.888 13 Si 0.870 3.130 14 H -0.286 1.286 15 H -0.295 1.295 16 H -0.220 1.220 17 N -0.297 5.297 18 N -0.321 5.321 19 C 0.328 3.672 20 N -0.453 5.453 21 C 0.024 3.976 22 C 0.119 3.881 23 C -0.110 4.110 24 C -0.155 4.155 25 C -0.039 4.039 26 S -0.295 6.295 27 C -0.026 4.026 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.350 0.650 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -0.328 -23.740 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.153 5.153 4 C -0.049 4.049 5 C -0.093 4.093 6 C 0.143 3.857 7 H 0.081 0.919 8 O -0.386 6.386 9 C -0.602 4.602 10 H 0.095 0.905 11 C -0.118 4.118 12 N -0.524 5.524 13 Si 0.697 3.303 14 H -0.213 1.213 15 H -0.222 1.222 16 H -0.143 1.143 17 N -0.137 5.137 18 N -0.165 5.165 19 C -0.029 4.029 20 N -0.176 5.176 21 C -0.123 4.123 22 C -0.010 4.010 23 C -0.112 4.112 24 C -0.175 4.175 25 C -0.186 4.186 26 S -0.069 6.069 27 C -0.173 4.173 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.197 0.803 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.155 0.845 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.952 1.271 -24.550 26.521 hybrid contribution 1.522 -1.661 0.581 2.327 sum -8.430 -0.391 -23.969 25.411 Atomic orbital electron populations 1.22118 0.94068 1.03061 1.03112 1.21869 0.95377 0.79101 1.05064 1.46189 1.49642 1.13657 1.05860 1.25277 0.99229 0.88108 0.92329 1.20963 1.02145 1.02341 0.83898 1.19809 0.90873 0.83681 0.91331 0.91929 1.86778 1.53656 1.28606 1.69579 1.21405 1.03257 1.43497 0.92084 0.90548 1.24964 0.98742 0.93427 0.94689 1.69936 1.29865 1.40882 1.11759 0.87031 0.81482 0.77568 0.84242 1.21252 1.22201 1.14264 1.74008 1.20053 1.17276 1.02318 1.74505 1.18639 1.18830 1.04540 1.22191 1.03514 0.89483 0.87671 1.58540 1.41589 1.21202 0.96310 1.22567 0.91188 0.97616 1.00933 1.20830 1.00695 0.89646 0.89794 1.21335 0.94296 1.00203 0.95391 1.22590 1.00892 1.00913 0.93142 1.23095 0.91233 1.04797 0.99517 1.88157 1.16389 1.94176 1.08145 1.23067 0.95173 1.06217 0.92884 0.91919 0.91699 0.90527 0.89298 0.87855 0.87916 0.90419 0.80291 0.92421 0.90837 0.89840 0.93937 0.88661 0.91464 0.84459 0.87393 0.87893 0.87493 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.22 6.68 -4.04 -0.03 1.19 16 3 N -0.46 -6.85 2.81 -114.08 -0.32 -7.17 16 4 C 0.22 3.92 7.09 -154.01 -1.09 2.83 16 5 C -0.05 -0.97 5.00 -27.88 -0.14 -1.11 16 6 C 0.20 4.39 2.30 -27.88 -0.06 4.33 16 7 H 0.06 1.52 7.57 -51.93 -0.39 1.12 16 8 O -0.58 -11.72 9.15 -35.23 -0.32 -12.04 16 9 C -0.57 -14.68 9.34 -34.44 -0.32 -15.00 16 10 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 12 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 13 Si 0.87 21.21 26.99 -169.99 -4.59 16.62 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.22 -5.20 5.31 56.52 0.30 -4.90 16 17 N -0.30 -5.97 12.18 32.99 0.40 -5.57 16 18 N -0.32 -5.84 11.47 30.32 0.35 -5.49 16 19 C 0.33 4.91 6.80 -318.87 -2.17 2.74 16 20 N -0.45 -5.02 4.72 -183.75 -0.87 -5.89 16 21 C 0.02 0.23 9.27 60.07 0.56 0.79 16 22 C 0.12 1.17 4.73 -4.98 -0.02 1.15 16 23 C -0.11 -0.87 4.97 -100.14 -0.50 -1.37 16 24 C -0.16 -1.04 8.79 -35.10 -0.31 -1.35 16 25 C -0.04 -0.24 7.46 36.37 0.27 0.03 16 26 S -0.30 -2.63 23.55 -107.50 -2.53 -5.16 16 27 C -0.03 -0.21 7.32 36.36 0.27 0.06 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.88 6.90 -51.93 -0.36 0.52 16 32 H 0.10 1.18 5.36 -51.93 -0.28 0.90 16 33 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.08 1.24 7.78 -51.93 -0.40 0.84 16 35 H 0.35 5.95 7.68 45.56 0.35 6.30 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 38 H 0.08 0.61 6.69 -51.93 -0.35 0.26 16 39 H 0.04 0.45 8.13 -51.93 -0.42 0.02 16 40 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 41 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 42 H 0.14 0.76 8.04 -52.49 -0.42 0.34 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -32.72 382.10 -11.11 -43.83 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.49 Total: 5.00 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.27 Total: -4.57 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.34 Total: -49.43 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.32 Total: -12.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.62 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.53 Total: -5.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.72 -11.11 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352766657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.199 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds