Wall clock time and date at job start Tue Mar 31 2020 21:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46960 * 2 1 4 4 C 1.36737 * 127.13936 * 95.30322 * 3 2 1 5 5 C 1.50702 * 126.34879 * 359.97438 * 4 3 2 6 6 C 1.53004 * 109.46666 * 90.00053 * 5 4 3 7 7 H 1.09002 * 109.47380 * 55.00260 * 6 5 4 8 8 O 1.42901 * 109.47242 * 294.99724 * 6 5 4 9 9 C 1.50699 * 109.46643 * 175.00015 * 6 5 4 10 10 H 1.08001 * 120.00556 * 0.02562 * 9 6 5 11 11 C 1.37882 * 120.00072 * 179.97438 * 9 6 5 12 12 N 1.31510 * 120.00201 * 180.02562 * 11 9 6 13 13 Si 1.86803 * 119.99749 * 0.02562 * 11 9 6 14 14 H 1.48506 * 109.46843 * 89.99930 * 13 11 9 15 15 H 1.48494 * 109.47079 * 209.99967 * 13 11 9 16 16 H 1.48504 * 109.46912 * 329.99956 * 13 11 9 17 17 N 1.30299 * 107.30173 * 180.23968 * 4 3 2 18 18 N 1.28524 * 110.05626 * 359.55970 * 17 4 3 19 19 C 1.31214 * 109.85938 * 0.45096 * 18 17 4 20 20 N 1.38584 * 126.47710 * 179.69167 * 19 18 17 21 21 C 1.46903 * 110.99825 * 100.59074 * 20 19 18 22 22 C 1.46898 * 110.99751 * 336.64384 * 20 19 18 23 23 C 1.50703 * 109.47153 * 196.37283 * 22 20 19 24 24 C 1.28870 * 121.25086 * 262.70807 * 23 22 20 25 25 C 1.51434 * 117.49667 * 180.02562 * 24 23 22 26 26 S 1.83837 * 102.54078 * 16.28762 * 25 24 23 27 27 C 1.51428 * 121.24529 * 82.42937 * 23 22 20 28 28 H 1.08999 * 109.46966 * 300.00208 * 1 2 3 29 29 H 1.08996 * 109.47215 * 60.00395 * 1 2 3 30 30 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47309 * 239.99555 * 2 1 3 32 32 H 1.09005 * 109.47281 * 119.99333 * 2 1 3 33 33 H 1.09000 * 109.46818 * 209.99878 * 5 4 3 34 34 H 1.08990 * 109.47009 * 330.00002 * 5 4 3 35 35 H 0.96702 * 113.99929 * 300.00704 * 8 6 5 36 36 H 0.96994 * 120.00219 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47236 * 57.66119 * 21 20 19 38 38 H 1.09001 * 109.47223 * 177.66061 * 21 20 19 39 39 H 1.08995 * 109.47324 * 297.66080 * 21 20 19 40 40 H 1.08999 * 109.47081 * 316.37640 * 22 20 19 41 41 H 1.09005 * 109.47320 * 76.37425 * 22 20 19 42 42 H 1.07989 * 121.25559 * 359.97438 * 24 23 22 43 43 H 1.08993 * 110.79314 * 134.55151 * 25 24 23 44 44 H 1.09001 * 110.79241 * 257.83115 * 25 24 23 45 45 H 1.09003 * 110.79447 * 281.97426 * 27 23 22 46 46 H 1.08996 * 110.80029 * 45.44838 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3885 2.1260 1.0854 5 6 2.3711 1.6779 2.5241 6 6 3.7194 1.0470 2.8780 7 1 4.5204 1.7507 2.6516 8 8 3.9027 -0.1458 2.1127 9 6 3.7464 0.7106 4.3467 10 1 2.8878 0.9249 4.9657 11 6 4.8670 0.1282 4.9000 12 7 4.8905 -0.1658 6.1816 13 14 6.3520 -0.2431 3.8292 14 1 7.2658 0.9275 3.8271 15 1 7.0667 -1.4281 4.3678 16 1 5.9038 -0.5238 2.4416 17 7 2.7536 3.2969 0.6456 18 7 2.6489 3.3392 -0.6347 19 6 2.1986 2.1912 -1.0833 20 7 1.9519 1.8635 -2.4070 21 6 3.0492 1.0614 -2.9641 22 6 1.7193 3.0693 -3.2132 23 6 1.0706 2.6839 -4.5178 24 6 1.7669 2.5323 -5.5915 25 6 1.0278 2.1448 -6.8552 26 16 -0.7191 2.5281 -6.4294 27 6 -0.4230 2.4542 -4.6145 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 2.1913 2.5372 3.1701 34 1 1.5780 0.9440 2.6664 35 1 3.2244 -0.8183 2.2639 36 1 5.6789 -0.5751 6.5710 37 1 3.1814 0.1606 -2.3647 38 1 2.8110 0.7830 -3.9907 39 1 3.9695 1.6453 -2.9502 40 1 1.0645 3.7497 -2.6688 41 1 2.6709 3.5624 -3.4123 42 1 2.8370 2.6771 -5.5905 43 1 1.3617 2.7481 -7.6992 44 1 1.1536 1.0829 -7.0668 45 1 -0.6907 1.4759 -4.2155 46 1 -0.9703 3.2453 -4.1020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352766657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:32 Heat of formation + Delta-G solvation = 41.709920 kcal Electronic energy + Delta-G solvation = -27762.924302 eV Core-core repulsion = 24008.294727 eV Total energy + Delta-G solvation = -3754.629575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.00553 -39.67650 -38.38742 -37.06020 -36.40030 -34.43548 -33.11458 -31.46165 -30.75620 -30.11737 -28.66771 -27.81507 -26.66744 -25.10943 -24.46504 -23.27857 -21.73572 -21.41761 -19.50507 -19.35685 -18.22573 -17.66688 -17.62342 -17.15550 -16.89500 -16.53126 -16.03804 -15.97344 -15.70881 -15.58011 -15.23740 -14.90001 -14.86530 -14.58535 -14.18401 -14.04694 -13.77204 -13.66937 -13.36537 -13.19690 -13.00396 -12.97713 -12.84558 -12.66471 -12.54011 -12.52734 -12.35811 -12.15302 -12.02445 -11.64578 -11.43198 -11.17353 -11.04801 -10.86442 -10.69598 -10.25092 -10.10519 -9.44614 -8.79039 -8.35299 -6.49548 0.73721 0.77542 0.82239 1.21924 1.38799 1.44623 1.47788 1.71144 1.78610 2.41674 2.71441 3.01910 3.38745 3.45212 3.57403 3.68696 3.85777 3.96171 4.00103 4.10079 4.16937 4.23061 4.33248 4.37536 4.39865 4.40615 4.44608 4.49043 4.57763 4.62725 4.64537 4.67150 4.71983 4.84405 4.86865 4.95588 5.16492 5.19658 5.22361 5.38837 5.41600 5.46511 5.59127 5.66228 6.07838 6.20698 6.63594 7.14435 7.32078 7.74111 8.78181 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002564 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.547514 B =10916.528054 C =11121.776572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.455 5.455 4 C 0.207 3.793 5 C -0.040 4.040 6 C 0.216 3.784 7 H 0.039 0.961 8 O -0.578 6.578 9 C -0.559 4.559 10 H 0.050 0.950 11 C 0.035 3.965 12 N -0.934 5.934 13 Si 0.930 3.070 14 H -0.296 1.296 15 H -0.296 1.296 16 H -0.204 1.204 17 N -0.335 5.335 18 N -0.355 5.355 19 C 0.345 3.655 20 N -0.443 5.443 21 C 0.025 3.975 22 C 0.125 3.875 23 C -0.122 4.122 24 C -0.138 4.138 25 C -0.027 4.027 26 S -0.345 6.345 27 C -0.016 4.016 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.369 0.631 36 H 0.267 0.733 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.156 0.844 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -1.953 -26.821 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.021 4.021 3 N -0.148 5.148 4 C -0.063 4.063 5 C -0.080 4.080 6 C 0.157 3.843 7 H 0.057 0.943 8 O -0.386 6.386 9 C -0.596 4.596 10 H 0.068 0.932 11 C -0.165 4.165 12 N -0.573 5.573 13 Si 0.756 3.244 14 H -0.224 1.224 15 H -0.223 1.223 16 H -0.126 1.126 17 N -0.175 5.175 18 N -0.200 5.200 19 C -0.012 4.012 20 N -0.168 5.168 21 C -0.122 4.122 22 C -0.003 4.003 23 C -0.124 4.124 24 C -0.158 4.158 25 C -0.174 4.174 26 S -0.119 6.119 27 C -0.163 4.163 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.173 0.827 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.128 0.872 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.041 -0.377 -27.658 29.427 hybrid contribution 1.463 -1.160 1.434 2.354 sum -8.578 -1.536 -26.224 27.634 Atomic orbital electron populations 1.22074 0.92503 1.04577 1.02368 1.22222 0.96641 0.77173 1.06055 1.46352 1.48930 1.14659 1.04864 1.24974 1.00268 0.88366 0.92651 1.20664 1.00692 1.02296 0.84349 1.19393 0.92153 0.83986 0.88799 0.94299 1.86680 1.54742 1.28542 1.68654 1.21703 1.01919 1.41865 0.94134 0.93173 1.25720 1.01447 0.93817 0.95554 1.70050 1.30790 1.42947 1.13479 0.86121 0.78214 0.76684 0.83399 1.22368 1.22257 1.12601 1.73905 1.21230 1.18809 1.03530 1.74419 1.20767 1.20841 1.03935 1.22597 1.00975 0.88524 0.89129 1.58779 1.41801 1.21635 0.94571 1.22656 0.90142 0.96957 1.02431 1.20742 1.00335 0.88975 0.90275 1.21105 0.94196 1.02313 0.94764 1.22794 1.01667 0.98635 0.92663 1.23219 0.88436 1.06142 0.99640 1.88362 1.19575 1.94446 1.09515 1.22995 0.95279 1.06234 0.91820 0.93110 0.91967 0.87840 0.87319 0.87781 0.88938 0.88046 0.78188 0.92419 0.90766 0.86929 0.94862 0.90421 0.91720 0.82695 0.85868 0.86144 0.87216 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 71.98 0.74 -1.76 16 2 C 0.10 1.96 6.68 86.38 0.58 2.54 16 3 N -0.46 -12.80 2.81 -514.84 -1.45 -14.25 16 4 C 0.21 7.30 7.09 137.64 0.98 8.28 16 5 C -0.04 -1.43 5.00 29.85 0.15 -1.28 16 6 C 0.22 9.27 2.30 29.85 0.07 9.34 16 7 H 0.04 1.89 7.57 -2.39 -0.02 1.87 16 8 O -0.58 -22.03 9.15 -148.98 -1.36 -23.40 16 9 C -0.56 -29.18 9.34 25.60 0.24 -28.95 16 10 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 11 C 0.04 1.94 5.47 84.66 0.46 2.41 16 12 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 13 Si 0.93 43.87 26.99 68.60 1.85 45.72 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 15 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.20 -9.01 5.31 99.48 0.53 -8.48 16 17 N -0.34 -13.57 12.18 -49.53 -0.60 -14.17 16 18 N -0.36 -12.89 11.47 -58.00 -0.67 -13.56 16 19 C 0.35 9.89 6.80 260.11 1.77 11.65 16 20 N -0.44 -8.86 4.72 -735.28 -3.47 -12.33 16 21 C 0.02 0.40 9.27 127.69 1.18 1.58 16 22 C 0.12 2.28 4.73 85.56 0.40 2.69 16 23 C -0.12 -1.65 4.97 -14.13 -0.07 -1.72 16 24 C -0.14 -1.38 8.79 28.00 0.25 -1.13 16 25 C -0.03 -0.25 7.46 71.47 0.53 0.28 16 26 S -0.35 -5.60 23.55 -56.49 -1.33 -6.93 16 27 C -0.02 -0.23 7.32 71.47 0.52 0.29 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.72 6.90 -2.39 -0.02 1.71 16 32 H 0.10 2.04 5.36 -2.38 -0.01 2.02 16 33 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.10 3.09 7.78 -2.39 -0.02 3.07 16 35 H 0.37 11.43 7.68 -74.06 -0.57 10.86 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.07 1.20 6.90 -2.39 -0.02 1.18 16 38 H 0.11 1.15 6.69 -2.39 -0.02 1.13 16 39 H 0.03 0.61 8.13 -2.39 -0.02 0.59 16 40 H 0.08 1.71 7.88 -2.39 -0.02 1.69 16 41 H 0.06 1.23 7.92 -2.38 -0.02 1.21 16 42 H 0.16 1.07 8.04 -2.92 -0.02 1.05 16 43 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -72.27 382.10 1.32 -70.95 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.24 Total: 19.24 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 7.80 Total: 4.21 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -5.89 Total: -109.80 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.36 Total: -23.40 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.85 Total: 45.72 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.33 Total: -6.93 kcal Total: -72.27 1.32 -70.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352766657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.660 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds