Wall clock time and date at job start Tue Mar 31 2020 20:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36001 * 117.00311 * 2 1 4 4 C 1.38667 * 120.04021 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.08491 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.90667 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47446 * 90.00127 * 6 5 4 8 8 C 1.46902 * 110.99865 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47263 * 35.00248 * 8 7 6 10 10 C 1.52997 * 109.47489 * 274.99915 * 8 7 6 11 11 C 1.50706 * 109.46580 * 154.99645 * 8 7 6 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 8 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.38228 * 120.18091 * 0.29376 * 5 4 3 20 20 C 1.38664 * 120.08803 * 359.45774 * 19 5 4 21 21 O 1.36001 * 120.04824 * 180.26783 * 20 19 5 22 22 C 1.42899 * 116.99579 * 0.24923 * 21 20 19 23 23 C 1.38977 * 120.04856 * 180.02562 * 3 2 1 24 24 O 1.36097 * 120.08843 * 0.02562 * 23 3 2 25 25 C 1.42905 * 116.99927 * 89.99416 * 24 23 3 26 26 C 1.50699 * 109.47262 * 179.97438 * 25 24 23 27 27 N 1.34776 * 120.00146 * 179.97438 * 26 25 24 28 28 O 1.21283 * 119.99899 * 0.02562 * 26 25 24 29 29 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46974 * 299.99926 * 1 2 3 31 31 H 1.08997 * 109.47417 * 59.99939 * 1 2 3 32 32 H 1.07993 * 119.95562 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.47266 * 329.99432 * 6 5 4 34 34 H 1.09005 * 109.46722 * 210.00375 * 6 5 4 35 35 H 1.00897 * 110.99955 * 303.94835 * 7 6 5 36 36 H 1.09002 * 109.47045 * 60.00316 * 10 8 7 37 37 H 1.09001 * 109.46922 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.47140 * 300.00408 * 10 8 7 39 39 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 40 40 H 1.07993 * 119.95493 * 179.72018 * 19 5 4 41 41 H 1.09002 * 109.47053 * 59.99779 * 22 21 20 42 42 H 1.08997 * 109.47348 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.47480 * 299.99955 * 22 21 20 44 44 H 1.08995 * 109.47294 * 300.00512 * 25 24 23 45 45 H 1.09001 * 109.46701 * 60.00437 * 25 24 23 46 46 H 0.97000 * 119.99635 * 0.02562 * 27 26 25 47 47 H 0.96994 * 119.99693 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9187 3.6074 0.0011 6 6 1.0950 4.8693 0.0022 7 7 0.8279 5.2785 1.3876 8 6 0.0257 6.5086 1.4278 9 1 -0.6789 6.5101 0.5962 10 6 0.9490 7.7235 1.3163 11 6 -0.7324 6.5714 2.7287 12 1 -0.6284 5.7773 3.4533 13 6 -1.5581 7.6432 2.9943 14 7 -2.2193 7.6983 4.1298 15 14 -1.7375 9.0171 1.7414 16 1 -0.7130 10.0603 2.0007 17 1 -1.5498 8.4679 0.3745 18 1 -3.0922 9.6150 1.8530 19 6 3.2988 3.6851 -0.0051 20 6 4.0604 2.5263 -0.0004 21 8 5.4182 2.6038 -0.0009 22 6 5.9933 3.9119 -0.0009 23 6 3.4342 1.2856 -0.0005 24 8 4.1781 0.1459 -0.0016 25 6 4.5321 -0.3966 -1.2754 26 6 5.3493 -1.6474 -1.0792 27 7 5.7972 -2.3345 -2.1486 28 8 5.6033 -2.0364 0.0412 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2136 2.3187 0.0014 33 1 0.1510 4.6875 -0.5114 34 1 1.6415 5.6603 -0.5114 35 1 0.3790 4.5367 1.9036 36 1 1.4973 7.6780 0.3753 37 1 0.3537 8.6361 1.3466 38 1 1.6536 7.7219 2.1479 39 1 -2.7999 8.4526 4.3168 40 1 3.7846 4.6496 -0.0092 41 1 5.6694 4.4511 0.8894 42 1 7.0802 3.8310 -0.0009 43 1 5.6688 4.4516 -0.8906 44 1 3.6265 -0.6374 -1.8321 45 1 5.1170 0.3355 -1.8322 46 1 5.5938 -2.0237 -3.0447 47 1 6.3229 -3.1398 -2.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413169370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:38 Heat of formation + Delta-G solvation = -108.805550 kcal Electronic energy + Delta-G solvation = -29591.984631 eV Core-core repulsion = 25355.782594 eV Total energy + Delta-G solvation = -4236.202037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91098 -39.62045 -39.06168 -37.60509 -37.27122 -35.57140 -33.96579 -32.66989 -31.13628 -29.68661 -29.25201 -28.05409 -27.91340 -26.81539 -25.30149 -24.12967 -22.03389 -21.48927 -21.08002 -19.96476 -18.67233 -17.93049 -17.60186 -17.33061 -16.74921 -16.60796 -16.48330 -16.04096 -15.69493 -15.56225 -15.45787 -14.90840 -14.70661 -14.21984 -14.13614 -14.02333 -13.83771 -13.26340 -13.05686 -12.98162 -12.59501 -12.38975 -12.22779 -12.16087 -11.75707 -11.66197 -11.60432 -11.53235 -10.97143 -10.88827 -10.70126 -10.46010 -10.15975 -10.11156 -10.10054 -9.99909 -9.55190 -9.10008 -8.66433 -8.25999 -8.18601 -7.60386 -6.14716 -4.15237 1.09027 1.35405 2.38017 2.70338 2.83284 3.22152 3.30665 3.33863 3.52808 3.55600 3.97004 4.33029 4.62308 4.68197 4.85421 4.89087 4.95398 5.02349 5.07066 5.09478 5.10215 5.13187 5.14150 5.16354 5.28437 5.41056 5.43734 5.45351 5.73119 5.89516 6.05035 6.13355 6.29493 6.36662 6.43401 6.45995 6.61818 6.63497 6.72411 6.83682 7.02494 7.17645 7.30873 7.49874 7.60619 7.83075 7.99166 8.23840 8.53966 8.89936 9.46646 10.98151 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.002533 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.772370 B =11049.286649 C =11989.545865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.153 3.847 4 C -0.228 4.228 5 C 0.012 3.988 6 C 0.090 3.910 7 N -0.671 5.671 8 C 0.182 3.818 9 H 0.002 0.998 10 C -0.138 4.138 11 C -0.521 4.521 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.297 1.297 19 C -0.213 4.213 20 C 0.152 3.848 21 O -0.305 6.305 22 C 0.024 3.976 23 C 0.014 3.986 24 O -0.282 6.282 25 C 0.044 3.956 26 C 0.521 3.479 27 N -0.856 5.856 28 O -0.517 6.517 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.342 0.658 36 H 0.025 0.975 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.265 0.735 40 H 0.138 0.862 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.401 0.599 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.999 -14.802 -18.340 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.107 3.893 4 C -0.248 4.248 5 C 0.011 3.989 6 C -0.039 4.039 7 N -0.303 5.303 8 C 0.074 3.926 9 H 0.019 0.981 10 C -0.196 4.196 11 C -0.559 4.559 12 H 0.097 0.903 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.194 1.194 18 H -0.225 1.225 19 C -0.232 4.232 20 C 0.105 3.895 21 O -0.218 6.218 22 C -0.071 4.071 23 C -0.032 4.032 24 O -0.197 6.197 25 C -0.035 4.035 26 C 0.305 3.695 27 N -0.423 5.423 28 O -0.391 6.391 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.229 0.771 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 13.807 -14.892 -17.161 26.587 hybrid contribution -1.270 0.921 -1.426 2.120 sum 12.537 -13.970 -18.587 26.416 Atomic orbital electron populations 1.23141 0.78003 1.04010 1.01936 1.86132 1.21525 1.25950 1.88167 1.18901 0.90428 0.84939 0.95065 1.21016 1.00335 0.91067 1.12357 1.19604 0.93099 0.94430 0.91726 1.20996 0.96862 0.92751 0.93275 1.60574 1.52959 1.07732 1.09025 1.19557 0.89607 0.86271 0.97186 0.98072 1.22080 0.99781 0.98297 0.99410 1.21084 1.24776 1.08389 1.01701 0.90282 1.24940 0.95059 0.97928 0.95170 1.69892 1.28994 1.31309 1.23221 0.86798 0.76096 0.82597 0.82311 1.20470 1.19408 1.22507 1.20965 0.93990 0.97145 1.11100 1.18942 0.82919 0.92537 0.95083 1.86131 1.16664 1.30827 1.88173 1.23140 0.98998 0.82945 1.01986 1.16847 0.86194 0.84078 1.16086 1.86315 1.70152 1.38097 1.25148 1.22379 0.99030 0.94072 0.87990 1.20229 0.79574 0.84815 0.84886 1.43695 1.58687 1.30931 1.08954 1.90794 1.56171 1.68387 1.23749 0.88154 0.91966 0.92508 0.84717 0.94686 0.90539 0.83905 0.95593 0.94412 0.92249 0.92515 0.84476 0.91900 0.88228 0.92514 0.90081 0.90086 0.77102 0.76368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.04 10.28 -34.32 -0.35 -4.39 16 3 C 0.15 2.17 6.70 -39.15 -0.26 1.91 16 4 C -0.23 -3.11 8.69 -39.42 -0.34 -3.45 16 5 C 0.01 0.18 5.39 -104.63 -0.56 -0.39 16 6 C 0.09 1.43 5.61 -4.98 -0.03 1.40 16 7 N -0.67 -13.18 6.29 -109.22 -0.69 -13.87 16 8 C 0.18 4.17 2.19 -68.86 -0.15 4.02 16 9 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 10 C -0.14 -2.97 8.89 37.16 0.33 -2.64 16 11 C -0.52 -14.28 9.17 -34.44 -0.32 -14.59 16 12 H 0.08 2.35 7.86 -52.49 -0.41 1.94 16 13 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 14 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 15 Si 0.89 21.55 24.37 -169.99 -4.14 17.41 16 16 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 17 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 18 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 19 C -0.21 -2.92 8.68 -39.43 -0.34 -3.26 16 20 C 0.15 2.15 6.70 -39.15 -0.26 1.89 16 21 O -0.31 -4.02 10.28 -34.33 -0.35 -4.37 16 22 C 0.02 0.22 9.81 101.05 0.99 1.21 16 23 C 0.01 0.20 5.75 -39.03 -0.22 -0.02 16 24 O -0.28 -4.40 9.16 -51.70 -0.47 -4.87 16 25 C 0.04 0.47 6.54 36.01 0.24 0.71 16 26 C 0.52 5.85 8.18 -10.99 -0.09 5.76 16 27 N -0.86 -4.97 8.87 31.22 0.28 -4.69 16 28 O -0.52 -8.57 17.34 -14.35 -0.25 -8.82 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.14 1.64 6.29 -52.49 -0.33 1.31 16 33 H 0.04 0.54 8.00 -51.93 -0.42 0.12 16 34 H 0.08 1.15 7.38 -51.93 -0.38 0.77 16 35 H 0.34 6.87 8.22 -39.29 -0.32 6.55 16 36 H 0.03 0.47 7.45 -51.93 -0.39 0.08 16 37 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.14 1.70 6.29 -52.49 -0.33 1.37 16 41 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.40 0.94 8.83 -40.82 -0.36 0.58 16 47 H 0.40 1.93 8.93 -40.82 -0.36 1.57 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -36.60 387.66 -6.21 -42.81 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.72 Total: 5.46 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.13 Total: -4.31 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.36 Total: -44.75 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.43 Total: -22.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.60 -6.21 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413169370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.993 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds