Wall clock time and date at job start Tue Mar 31 2020 20:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36001 * 117.00311 * 2 1 4 4 C 1.38667 * 120.04021 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.08491 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.90667 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47446 * 90.00127 * 6 5 4 8 8 C 1.46902 * 110.99865 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47263 * 35.00248 * 8 7 6 10 10 C 1.52997 * 109.47489 * 274.99915 * 8 7 6 11 11 C 1.50706 * 109.46580 * 154.99645 * 8 7 6 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99350 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 8 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.38228 * 120.18091 * 0.29376 * 5 4 3 20 20 C 1.38664 * 120.08803 * 359.45774 * 19 5 4 21 21 O 1.36001 * 120.04824 * 180.26783 * 20 19 5 22 22 C 1.42899 * 116.99579 * 0.24923 * 21 20 19 23 23 C 1.38977 * 120.04856 * 180.02562 * 3 2 1 24 24 O 1.36097 * 120.08843 * 0.02562 * 23 3 2 25 25 C 1.42905 * 116.99927 * 89.99416 * 24 23 3 26 26 C 1.50699 * 109.47262 * 179.97438 * 25 24 23 27 27 N 1.34776 * 120.00146 * 179.97438 * 26 25 24 28 28 O 1.21283 * 119.99899 * 0.02562 * 26 25 24 29 29 H 1.08997 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46974 * 299.99926 * 1 2 3 31 31 H 1.08997 * 109.47417 * 59.99939 * 1 2 3 32 32 H 1.07993 * 119.95562 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.47266 * 329.99432 * 6 5 4 34 34 H 1.09005 * 109.46722 * 210.00375 * 6 5 4 35 35 H 1.00897 * 110.99955 * 303.94835 * 7 6 5 36 36 H 1.09002 * 109.47045 * 60.00316 * 10 8 7 37 37 H 1.09001 * 109.46922 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.47140 * 300.00408 * 10 8 7 39 39 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 40 40 H 1.07993 * 119.95493 * 179.72018 * 19 5 4 41 41 H 1.09002 * 109.47053 * 59.99779 * 22 21 20 42 42 H 1.08997 * 109.47348 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.47480 * 299.99955 * 22 21 20 44 44 H 1.08995 * 109.47294 * 300.00512 * 25 24 23 45 45 H 1.09001 * 109.46701 * 60.00437 * 25 24 23 46 46 H 0.97000 * 119.99635 * 0.02562 * 27 26 25 47 47 H 0.96994 * 119.99693 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9187 3.6074 0.0011 6 6 1.0950 4.8693 0.0022 7 7 0.8279 5.2785 1.3876 8 6 0.0257 6.5086 1.4278 9 1 -0.6789 6.5101 0.5962 10 6 0.9490 7.7235 1.3163 11 6 -0.7324 6.5714 2.7287 12 1 -0.6284 5.7773 3.4533 13 6 -1.5581 7.6432 2.9943 14 7 -2.2193 7.6983 4.1298 15 14 -1.7375 9.0171 1.7414 16 1 -0.7130 10.0603 2.0007 17 1 -1.5498 8.4679 0.3745 18 1 -3.0922 9.6150 1.8530 19 6 3.2988 3.6851 -0.0051 20 6 4.0604 2.5263 -0.0004 21 8 5.4182 2.6038 -0.0009 22 6 5.9933 3.9119 -0.0009 23 6 3.4342 1.2856 -0.0005 24 8 4.1781 0.1459 -0.0016 25 6 4.5321 -0.3966 -1.2754 26 6 5.3493 -1.6474 -1.0792 27 7 5.7972 -2.3345 -2.1486 28 8 5.6033 -2.0364 0.0412 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2136 2.3187 0.0014 33 1 0.1510 4.6875 -0.5114 34 1 1.6415 5.6603 -0.5114 35 1 0.3790 4.5367 1.9036 36 1 1.4973 7.6780 0.3753 37 1 0.3537 8.6361 1.3466 38 1 1.6536 7.7219 2.1479 39 1 -2.7999 8.4526 4.3168 40 1 3.7846 4.6496 -0.0092 41 1 5.6694 4.4511 0.8894 42 1 7.0802 3.8310 -0.0009 43 1 5.6688 4.4516 -0.8906 44 1 3.6265 -0.6374 -1.8321 45 1 5.1170 0.3355 -1.8322 46 1 5.5938 -2.0237 -3.0447 47 1 6.3229 -3.1398 -2.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413169370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:37 Heat of formation + Delta-G solvation = -138.806329 kcal Electronic energy + Delta-G solvation = -29593.285562 eV Core-core repulsion = 25355.782594 eV Total energy + Delta-G solvation = -4237.502969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90937 -40.53269 -39.99419 -38.69191 -38.44339 -36.99958 -34.74833 -34.52171 -32.59576 -30.68553 -30.55627 -28.97650 -28.72304 -27.81355 -27.13069 -25.46398 -22.99998 -22.59738 -21.92566 -21.72174 -19.69643 -18.96660 -18.62751 -18.37886 -18.32200 -17.57919 -17.32134 -17.18210 -16.94919 -16.55877 -16.42366 -15.85093 -15.69049 -15.66828 -15.55974 -15.31762 -14.93572 -14.78645 -14.24734 -14.08736 -13.98548 -13.66372 -13.50766 -13.17684 -13.01640 -12.82482 -12.63693 -12.61521 -12.46779 -12.40131 -12.03825 -11.90072 -11.59322 -11.37887 -11.07691 -11.07095 -11.03260 -10.77092 -10.71602 -9.34925 -9.19891 -9.10995 -8.30505 -6.35758 0.03388 0.32375 1.32797 1.36534 1.47618 1.52661 1.81956 1.99998 2.31696 2.52052 2.68800 3.04916 3.07089 3.52354 3.77315 3.92642 3.95998 3.97009 4.16375 4.19352 4.25077 4.33271 4.35110 4.38229 4.41319 4.42800 4.52025 4.63097 4.69225 4.73201 4.75793 4.77366 4.89544 4.97626 5.03452 5.11413 5.37224 5.49737 5.52962 5.65469 5.81706 5.96841 5.98474 6.25657 6.38225 6.47610 6.62752 6.64966 6.79875 7.29617 7.30790 8.86009 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.002533 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.772370 B =11049.286649 C =11989.545865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.147 3.853 4 C -0.227 4.227 5 C 0.002 3.998 6 C 0.095 3.905 7 N -0.676 5.676 8 C 0.187 3.813 9 H 0.003 0.997 10 C -0.135 4.135 11 C -0.525 4.525 12 H 0.037 0.963 13 C 0.012 3.988 14 N -0.948 5.948 15 Si 0.955 3.045 16 H -0.267 1.267 17 H -0.245 1.245 18 H -0.300 1.300 19 C -0.210 4.210 20 C 0.147 3.853 21 O -0.321 6.321 22 C 0.016 3.984 23 C 0.001 3.999 24 O -0.315 6.315 25 C 0.041 3.959 26 C 0.520 3.480 27 N -0.826 5.826 28 O -0.581 6.581 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.336 0.664 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.049 0.951 39 H 0.266 0.734 40 H 0.151 0.849 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.421 0.579 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.917 -14.265 -21.693 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.100 3.900 4 C -0.246 4.246 5 C 0.001 3.999 6 C -0.034 4.034 7 N -0.307 5.307 8 C 0.078 3.922 9 H 0.021 0.979 10 C -0.193 4.193 11 C -0.563 4.563 12 H 0.055 0.945 13 C -0.186 4.186 14 N -0.588 5.588 15 Si 0.782 3.218 16 H -0.193 1.193 17 H -0.168 1.168 18 H -0.228 1.228 19 C -0.230 4.230 20 C 0.100 3.900 21 O -0.234 6.234 22 C -0.078 4.078 23 C -0.045 4.045 24 O -0.231 6.231 25 C -0.037 4.037 26 C 0.305 3.695 27 N -0.393 5.393 28 O -0.460 6.460 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.169 0.831 41 H 0.076 0.924 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.253 0.747 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 14.755 -14.377 -20.608 29.139 hybrid contribution -1.488 0.580 -0.401 1.646 sum 13.267 -13.797 -21.009 28.421 Atomic orbital electron populations 1.23406 0.76178 1.05723 1.02451 1.86117 1.23448 1.25715 1.88081 1.18966 0.90423 0.85401 0.95222 1.21118 1.00896 0.90777 1.11839 1.19508 0.93301 0.94029 0.93065 1.21012 0.97627 0.93797 0.90919 1.60525 1.51820 1.06701 1.11689 1.19402 0.89959 0.88526 0.94345 0.97902 1.21998 0.99386 0.96875 1.01050 1.21400 1.25106 1.06982 1.02851 0.94490 1.25849 0.94756 1.00836 0.97173 1.70052 1.30445 1.32526 1.25733 0.85756 0.76015 0.79353 0.80653 1.19287 1.16849 1.22819 1.21079 0.93743 0.97632 1.10498 1.18992 0.83518 0.92382 0.95126 1.86120 1.16133 1.33084 1.88041 1.23421 1.00174 0.81585 1.02596 1.17138 0.86692 0.84374 1.16263 1.86229 1.70456 1.38492 1.27872 1.22604 1.00189 0.94233 0.86677 1.20423 0.79237 0.85001 0.84874 1.43443 1.56851 1.30186 1.08807 1.90769 1.58902 1.70070 1.26292 0.85956 0.92478 0.90893 0.83647 0.93903 0.89138 0.84687 0.91907 0.95053 0.93211 0.92485 0.83134 0.92351 0.86014 0.90735 0.88051 0.87955 0.74697 0.75375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -8.29 10.28 -79.62 -0.82 -9.11 16 3 C 0.15 4.07 6.70 22.55 0.15 4.22 16 4 C -0.23 -5.94 8.69 22.37 0.19 -5.75 16 5 C 0.00 0.05 5.39 -19.87 -0.11 -0.06 16 6 C 0.09 2.78 5.61 85.56 0.48 3.25 16 7 N -0.68 -25.79 6.29 -499.45 -3.14 -28.93 16 8 C 0.19 8.26 2.19 44.17 0.10 8.36 16 9 H 0.00 0.15 6.86 -2.39 -0.02 0.14 16 10 C -0.14 -5.44 8.89 71.98 0.64 -4.80 16 11 C -0.53 -29.18 9.17 25.60 0.23 -28.94 16 12 H 0.04 2.30 7.86 -2.91 -0.02 2.28 16 13 C 0.01 0.66 5.45 84.66 0.46 1.12 16 14 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 15 Si 0.96 43.62 24.37 68.60 1.67 45.30 16 16 H -0.27 -11.65 6.87 99.48 0.68 -10.96 16 17 H -0.24 -10.14 6.53 99.48 0.65 -9.49 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 19 C -0.21 -5.42 8.68 22.37 0.19 -5.22 16 20 C 0.15 4.01 6.70 22.55 0.15 4.16 16 21 O -0.32 -8.08 10.28 -79.62 -0.82 -8.90 16 22 C 0.02 0.27 9.81 113.37 1.11 1.38 16 23 C 0.00 0.02 5.75 22.62 0.13 0.15 16 24 O -0.31 -9.82 9.16 -64.39 -0.59 -10.41 16 25 C 0.04 0.84 6.54 71.24 0.47 1.30 16 26 C 0.52 11.32 8.18 87.66 0.72 12.04 16 27 N -0.83 -8.00 8.87 -173.53 -1.54 -9.54 16 28 O -0.58 -19.69 17.34 16.00 0.28 -19.42 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 31 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 32 H 0.15 3.37 6.29 -2.91 -0.02 3.35 16 33 H 0.04 1.20 8.00 -2.39 -0.02 1.18 16 34 H 0.09 2.40 7.38 -2.38 -0.02 2.38 16 35 H 0.34 13.53 8.22 -89.70 -0.74 12.79 16 36 H 0.06 2.05 7.45 -2.39 -0.02 2.03 16 37 H 0.03 1.29 3.27 -2.39 -0.01 1.28 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 40 H 0.15 3.36 6.29 -2.91 -0.02 3.34 16 41 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 0.95 7.65 -2.38 -0.02 0.93 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.42 0.79 8.83 -92.71 -0.82 -0.03 16 47 H 0.41 3.21 8.93 -92.71 -0.83 2.38 16 Total: -1.00 -82.22 387.66 -0.05 -82.27 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -1.42 Total: 24.38 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 6.03 Total: -7.39 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -4.38 Total: -96.71 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.95 Total: -47.84 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.67 Total: 45.30 kcal Total: -82.22 -0.05 -82.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413169370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.536 kcal (2) G-P(sol) polarization free energy of solvation -82.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds