Wall clock time and date at job start Tue Mar 31 2020 20:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46754 * 2 1 4 4 C 1.53001 * 109.46708 * 119.98888 * 2 1 3 5 5 C 1.50696 * 109.47687 * 295.00373 * 4 2 1 6 6 H 1.08004 * 119.99566 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00373 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99980 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46945 * 89.99911 * 9 7 5 11 11 H 1.48494 * 109.47044 * 210.00287 * 9 7 5 12 12 H 1.48504 * 109.47117 * 330.00157 * 9 7 5 13 13 C 1.52997 * 109.47433 * 239.99447 * 2 1 3 14 14 N 1.46894 * 109.47182 * 65.00147 * 13 2 1 15 15 C 1.46898 * 110.99918 * 180.02562 * 14 13 2 16 16 H 1.09004 * 109.47607 * 34.99717 * 15 14 13 17 17 C 1.53003 * 109.47187 * 274.99830 * 15 14 13 18 18 O 1.42898 * 109.46918 * 295.00210 * 17 15 14 19 19 C 1.52997 * 109.47386 * 154.99881 * 15 14 13 20 20 H 1.09004 * 109.47261 * 184.99850 * 19 15 14 21 21 O 1.42905 * 109.47264 * 64.99761 * 19 15 14 22 22 C 1.50699 * 109.47078 * 304.99885 * 19 15 14 23 23 C 1.38236 * 120.00179 * 84.72631 * 22 19 15 24 24 C 1.38234 * 119.99962 * 179.78684 * 23 22 19 25 25 C 1.38235 * 120.00120 * 0.46471 * 24 23 22 26 26 N 1.48013 * 119.99989 * 179.78655 * 25 24 23 27 27 O 1.21798 * 119.99937 * 179.97438 * 26 25 24 28 28 O 1.21802 * 119.99998 * 359.97438 * 26 25 24 29 29 C 1.38233 * 119.99871 * 359.76764 * 25 24 23 30 30 C 1.38234 * 119.99895 * 264.99570 * 22 19 15 31 31 H 1.08992 * 109.47503 * 300.01052 * 1 2 3 32 32 H 1.08999 * 109.46536 * 60.00951 * 1 2 3 33 33 H 1.08997 * 109.46682 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47104 * 55.00820 * 4 2 1 35 35 H 1.09004 * 109.46725 * 175.00202 * 4 2 1 36 36 H 0.96998 * 119.99846 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.46709 * 304.99660 * 13 2 1 38 38 H 1.09000 * 109.46826 * 185.00221 * 13 2 1 39 39 H 1.00897 * 111.00342 * 56.04422 * 14 13 2 40 40 H 1.09007 * 109.47125 * 54.99611 * 17 15 14 41 41 H 1.08997 * 109.47542 * 174.99651 * 17 15 14 42 42 H 0.96697 * 114.00114 * 179.97438 * 18 17 15 43 43 H 0.96702 * 113.99404 * 300.00214 * 21 19 15 44 44 H 1.07998 * 119.99755 * 0.02562 * 23 22 19 45 45 H 1.08001 * 119.99780 * 180.25171 * 24 23 22 46 46 H 1.08002 * 120.00008 * 180.02562 * 29 25 24 47 47 H 1.07996 * 120.00034 * 359.97438 * 30 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7210 1.2494 5 6 1.6412 0.0574 2.4766 6 1 1.0798 0.9745 2.3756 7 6 1.9921 -0.4017 3.7284 8 7 2.6744 -1.5193 3.8516 9 14 1.4985 0.5635 5.2496 10 1 0.1708 0.0963 5.7230 11 1 2.5075 0.3529 6.3186 12 1 1.4247 2.0088 4.9165 13 6 2.0401 -0.7213 -1.2491 14 7 1.6516 0.0372 -2.4456 15 6 2.1250 -0.6275 -3.6670 16 1 2.0810 -1.7084 -3.5330 17 6 3.5687 -0.2070 -3.9496 18 8 3.6093 1.1915 -4.2402 19 6 1.2363 -0.2232 -4.8449 20 1 1.5315 -0.7836 -5.7320 21 8 1.3837 1.1761 -5.0946 22 6 -0.2028 -0.5258 -4.5155 23 6 -0.9546 0.3869 -3.7994 24 6 -2.2759 0.1112 -3.5010 25 6 -2.8427 -1.0813 -3.9103 26 7 -4.2561 -1.3785 -3.5867 27 8 -4.7556 -2.4290 -3.9478 28 8 -4.9197 -0.5725 -2.9594 29 6 -2.0895 -1.9961 -4.6222 30 6 -0.7694 -1.7185 -4.9244 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5137 -0.8901 33 1 -0.3632 -1.0277 0.0005 34 1 1.6054 -1.7196 1.2954 35 1 3.1263 -0.7992 1.2058 36 1 2.9216 -1.8420 4.7322 37 1 1.6055 -1.7199 -1.2949 38 1 3.1264 -0.7995 -1.2053 39 1 1.9883 0.9871 -2.3967 40 1 4.1854 -0.4144 -3.0750 41 1 3.9497 -0.7669 -4.8037 42 1 4.4957 1.5284 -4.4294 43 1 1.1382 1.7371 -4.3462 44 1 -0.5108 1.3170 -3.4765 45 1 -2.8644 0.8261 -2.9452 46 1 -2.5324 -2.9276 -4.9423 47 1 -0.1809 -2.4333 -5.4804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474699826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:51 Heat of formation + Delta-G solvation = -89.580175 kcal Electronic energy + Delta-G solvation = -30157.003832 eV Core-core repulsion = 25921.635470 eV Total energy + Delta-G solvation = -4235.368363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20385 -40.33393 -38.52120 -36.59040 -36.38348 -36.19047 -33.90796 -32.53485 -31.92782 -31.53873 -29.36687 -27.35392 -26.79343 -25.26916 -24.84605 -23.33581 -22.65922 -21.97383 -20.85538 -19.46408 -19.26351 -18.69267 -17.74516 -17.54967 -17.46914 -16.40293 -16.35345 -15.82131 -15.41651 -15.15308 -14.89547 -14.50920 -14.20353 -14.06797 -13.97771 -13.62236 -13.53959 -13.01702 -12.85043 -12.42579 -12.24071 -12.10424 -11.78049 -11.66562 -11.57360 -11.51437 -11.36618 -11.22775 -11.17291 -10.91766 -10.87503 -10.55947 -10.37468 -10.33788 -10.05390 -9.81487 -9.55306 -9.47104 -9.22748 -9.02776 -8.38861 -8.36046 -6.03465 -4.04941 -0.24521 0.82017 1.26796 1.37238 3.10344 3.29832 3.36413 3.39060 3.76686 4.07465 4.18922 4.26302 4.30471 4.33217 4.44760 4.61842 4.73386 4.79852 4.89793 5.05963 5.13271 5.17581 5.30690 5.33340 5.42054 5.48591 5.56354 5.56993 5.64295 5.74268 6.00729 6.03536 6.10314 6.25596 6.39166 6.40300 6.52755 6.84622 7.02874 7.06052 7.15620 7.38887 7.42278 7.47572 7.60010 7.60576 7.75509 7.95724 8.39218 9.01216 9.59152 11.08021 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.008367 B = 0.003538 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.563775 B = 7911.746217 C =10471.392629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.680 5.680 15 C 0.057 3.943 16 H 0.097 0.903 17 C 0.052 3.948 18 O -0.552 6.552 19 C 0.158 3.842 20 H 0.109 0.891 21 O -0.531 6.531 22 C -0.043 4.043 23 C -0.074 4.074 24 C -0.052 4.052 25 C -0.048 4.048 26 N 0.031 4.969 27 O -0.169 6.169 28 O -0.162 6.162 29 C -0.057 4.057 30 C -0.118 4.118 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.015 0.985 35 H 0.011 0.989 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.348 0.652 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.375 0.625 43 H 0.377 0.623 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.149 0.851 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 1.819 -22.295 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.312 5.312 15 C -0.054 4.054 16 H 0.115 0.885 17 C -0.028 4.028 18 O -0.356 6.356 19 C 0.098 3.902 20 H 0.127 0.873 21 O -0.337 6.337 22 C -0.044 4.044 23 C -0.093 4.093 24 C -0.071 4.071 25 C -0.131 4.131 26 N 0.549 4.451 27 O -0.384 6.384 28 O -0.378 6.378 29 C -0.076 4.076 30 C -0.137 4.137 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.167 0.833 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.221 0.779 43 H 0.225 0.775 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.167 0.833 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.348 1.289 -22.823 22.899 hybrid contribution 0.840 0.461 1.734 1.981 sum -0.508 1.750 -21.089 21.167 Atomic orbital electron populations 1.21579 0.95706 1.00431 1.00112 1.21185 0.95891 0.98948 0.93929 0.92732 1.19103 0.95804 0.95532 0.90465 1.21208 1.34722 1.08340 0.90949 0.92573 1.25011 0.95239 0.95072 0.99132 1.69958 1.39037 1.21224 1.23439 0.86633 0.78299 0.80435 0.82894 1.20649 1.21289 1.19872 1.22184 0.97300 0.97468 0.89269 1.60607 1.63119 1.06516 1.00944 1.22410 0.91174 0.99929 0.91915 0.88544 1.22727 0.97584 0.83396 0.99104 1.86546 1.33749 1.22439 1.92908 1.20862 0.87997 0.84463 0.96895 0.87349 1.86621 1.89735 1.14616 1.42697 1.20947 0.97073 0.93426 0.92932 1.20820 0.91563 1.00626 0.96256 1.21053 0.95781 0.94334 0.95965 1.21096 0.82092 0.99922 1.09988 1.43660 1.03272 0.99910 0.98232 1.94517 1.74107 1.13654 1.56086 1.94546 1.61264 1.43903 1.38096 1.20942 0.93835 0.98587 0.94280 1.20965 0.93801 0.97419 1.01480 0.92667 0.94153 0.94418 0.96699 0.97032 0.93061 0.91669 0.95602 0.83312 0.93368 0.93659 0.77901 0.77464 0.83723 0.83100 0.83303 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.89 37.16 0.33 -1.85 16 2 C -0.08 -1.50 2.48 -90.62 -0.22 -1.72 16 3 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 6 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.07 0.97 4.87 -3.83 -0.02 0.95 16 14 N -0.68 -7.28 4.06 -106.73 -0.43 -7.71 16 15 C 0.06 0.49 2.40 -67.71 -0.16 0.33 16 16 H 0.10 0.83 7.80 -51.93 -0.40 0.43 16 17 C 0.05 0.42 6.72 37.16 0.25 0.67 16 18 O -0.55 -4.49 10.55 -58.58 -0.62 -5.11 16 19 C 0.16 1.24 3.15 -27.88 -0.09 1.15 16 20 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 21 O -0.53 -4.79 10.74 -58.58 -0.63 -5.42 16 22 C -0.04 -0.37 4.78 -104.62 -0.50 -0.87 16 23 C -0.07 -0.69 8.39 -39.58 -0.33 -1.02 16 24 C -0.05 -0.56 9.56 -39.58 -0.38 -0.93 16 25 C -0.05 -0.57 6.85 -79.95 -0.55 -1.12 16 26 N 0.03 0.44 4.45 33.96 0.15 0.59 16 27 O -0.17 -2.48 18.45 -29.46 -0.54 -3.03 16 28 O -0.16 -2.45 18.45 -29.46 -0.54 -3.00 16 29 C -0.06 -0.56 9.56 -39.58 -0.38 -0.93 16 30 C -0.12 -0.95 9.68 -39.58 -0.38 -1.33 16 31 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 32 H 0.04 0.61 7.75 -51.93 -0.40 0.21 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.06 1.00 8.05 -51.93 -0.42 0.59 16 38 H 0.03 0.39 7.36 -51.93 -0.38 0.01 16 39 H 0.35 3.78 7.51 -39.29 -0.30 3.48 16 40 H 0.05 0.44 7.35 -51.93 -0.38 0.06 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.37 1.86 9.12 45.56 0.42 2.27 16 43 H 0.38 3.03 6.61 45.56 0.30 3.33 16 44 H 0.15 1.16 6.59 -52.49 -0.35 0.81 16 45 H 0.15 1.51 7.61 -52.49 -0.40 1.11 16 46 H 0.15 1.25 7.61 -52.49 -0.40 0.85 16 47 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -32.27 388.98 -9.52 -41.79 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.53 Total: 4.35 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.94 Total: -18.93 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.45 Total: -32.96 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -2.33 Total: -16.55 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.27 -9.52 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474699826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.789 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds