Wall clock time and date at job start Tue Mar 31 2020 21:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46579 * 2 1 4 4 N 1.46906 * 109.46507 * 119.99385 * 2 1 3 5 5 C 1.46898 * 111.00196 * 275.00132 * 4 2 1 6 6 C 1.52997 * 109.47005 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47140 * 294.99810 * 6 5 4 8 8 C 1.53006 * 109.47164 * 174.99862 * 6 5 4 9 9 N 1.46500 * 109.47204 * 54.99937 * 6 5 4 10 10 C 1.46505 * 120.00078 * 60.00024 * 9 6 5 11 11 C 1.34771 * 120.00141 * 239.99880 * 9 6 5 12 12 O 1.21281 * 120.00208 * 359.97438 * 11 9 6 13 13 C 1.50699 * 120.00070 * 180.02562 * 11 9 6 14 14 S 1.81001 * 109.47249 * 180.02562 * 13 11 9 15 15 C 1.76192 * 100.00228 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00179 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00206 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00097 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99897 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47265 * 89.99595 * 19 17 15 21 21 H 1.48500 * 109.47133 * 209.99997 * 19 17 15 22 22 H 1.48503 * 109.46760 * 329.99395 * 19 17 15 23 23 C 1.50691 * 109.47491 * 239.99365 * 2 1 3 24 24 N 1.31795 * 119.12746 * 284.73185 * 23 2 1 25 25 C 1.32333 * 120.81954 * 179.75396 * 24 23 2 26 26 C 1.38598 * 119.10379 * 0.51082 * 25 24 23 27 27 C 1.38594 * 118.40118 * 359.74281 * 26 25 24 28 28 N 1.31795 * 119.12084 * 104.99594 * 23 2 1 29 29 H 1.08995 * 109.47651 * 300.00406 * 1 2 3 30 30 H 1.09003 * 109.46982 * 60.00268 * 1 2 3 31 31 H 1.09003 * 109.46579 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99574 * 151.05069 * 4 2 1 33 33 H 1.09002 * 109.47308 * 60.00375 * 5 4 2 34 34 H 1.09006 * 109.46694 * 300.00543 * 5 4 2 35 35 H 1.09001 * 109.47002 * 59.99738 * 8 6 5 36 36 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.47050 * 300.00004 * 8 6 5 38 38 H 1.09004 * 109.47130 * 89.99894 * 10 9 6 39 39 H 1.08997 * 109.47212 * 209.99646 * 10 9 6 40 40 H 1.09003 * 109.46772 * 330.00259 * 10 9 6 41 41 H 1.08999 * 109.47401 * 300.00043 * 13 11 9 42 42 H 1.09002 * 109.47014 * 60.00321 * 13 11 9 43 43 H 0.96995 * 120.00141 * 180.02562 * 18 17 15 44 44 H 1.08005 * 120.44622 * 180.27392 * 25 24 23 45 45 H 1.08000 * 120.79873 * 179.77049 * 26 25 24 46 46 H 1.07996 * 120.44931 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0823 0.2227 2.3470 6 6 2.5959 -0.5327 3.5743 7 1 1.8751 -1.3000 3.8566 8 6 2.7798 0.4463 4.7357 9 7 3.8806 -1.1620 3.2582 10 6 5.0195 -0.3366 2.8484 11 6 4.0146 -2.5003 3.3443 12 8 3.0720 -3.1836 3.6839 13 6 5.3362 -3.1476 3.0196 14 16 5.1972 -4.9403 3.2270 15 6 6.8346 -5.4263 2.7946 16 1 7.5626 -4.6802 2.5123 17 6 7.1889 -6.7682 2.8166 18 7 8.4120 -7.1313 2.4931 19 14 5.9296 -8.0588 3.3042 20 1 5.2057 -8.5258 2.0947 21 1 6.6203 -9.2081 3.9424 22 1 4.9618 -7.4684 4.2634 23 6 2.0325 -0.7105 -1.2303 24 7 1.9703 -2.0260 -1.2817 25 6 2.3975 -2.6837 -2.3476 26 6 2.9247 -1.9711 -3.4131 27 6 2.9781 -0.5893 -3.3199 28 7 2.5272 -0.0001 -2.2241 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.9173 -1.1204 1.0290 33 1 1.0869 0.6165 2.5526 34 1 2.7588 1.0463 2.1182 35 1 1.8240 0.9146 4.9709 36 1 3.1461 -0.0918 5.6099 37 1 3.5006 1.2137 4.4534 38 1 5.5888 -0.0399 3.7293 39 1 5.6602 -0.9088 2.1775 40 1 4.6568 0.5531 2.3336 41 1 5.6080 -2.9215 1.9885 42 1 6.1041 -2.7623 3.6905 43 1 8.6596 -8.0690 2.5081 44 1 2.3397 -3.7616 -2.3851 45 1 3.2847 -2.4803 -4.2948 46 1 3.3820 -0.0013 -4.1308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482256752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:44 Heat of formation + Delta-G solvation = 22.762847 kcal Electronic energy + Delta-G solvation = -27263.557412 eV Core-core repulsion = 23508.106231 eV Total energy + Delta-G solvation = -3755.451181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28361 -39.81236 -37.36540 -35.62864 -33.88979 -32.92561 -32.41960 -31.60426 -29.72920 -28.77343 -26.84166 -25.91990 -25.59048 -24.84403 -24.21635 -21.57012 -21.19420 -19.02177 -17.72752 -17.71260 -17.47737 -16.91991 -16.14763 -15.76257 -15.43640 -15.36837 -15.00401 -14.92303 -14.76721 -14.10738 -13.87199 -13.67624 -13.49099 -13.31624 -13.17790 -12.77092 -12.69508 -12.48356 -12.44605 -12.29151 -12.08457 -12.02160 -11.67018 -11.38595 -11.23118 -11.02151 -11.00024 -10.98787 -10.87753 -10.54156 -9.83133 -9.79310 -9.39074 -9.34929 -8.98213 -8.66927 -8.44984 -8.42614 -6.87831 -6.27259 -3.97928 0.64045 0.89517 2.75792 3.04593 3.22765 3.35113 3.45034 3.53269 3.55329 3.63151 3.79362 4.21576 4.35374 4.40038 4.64571 4.72195 4.79803 4.86204 4.91706 4.97022 5.01661 5.10634 5.11978 5.15859 5.19851 5.25331 5.37001 5.40010 5.43340 5.54573 5.55895 5.60464 5.65290 5.69047 5.81781 5.98570 6.03629 6.05601 6.12413 6.17602 6.66525 6.77088 6.86117 7.20947 7.52216 7.91371 7.95785 8.42768 8.54954 9.19360 10.82045 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.003677 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.112004 B = 7613.456796 C = 9516.985420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.157 3.843 3 H 0.067 0.933 4 N -0.664 5.664 5 C 0.050 3.950 6 C 0.139 3.861 7 H 0.111 0.889 8 C -0.158 4.158 9 N -0.619 5.619 10 C 0.076 3.924 11 C 0.534 3.466 12 O -0.508 6.508 13 C -0.120 4.120 14 S -0.140 6.140 15 C -0.521 4.521 16 H 0.086 0.914 17 C 0.096 3.904 18 N -0.882 5.882 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.235 1.235 23 C 0.309 3.691 24 N -0.486 5.486 25 C 0.152 3.848 26 C -0.229 4.229 27 C 0.144 3.856 28 N -0.519 5.519 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.349 0.651 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.270 0.730 44 H 0.172 0.828 45 H 0.149 0.851 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 19.465 -8.165 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.085 0.915 4 N -0.298 5.298 5 C -0.080 4.080 6 C 0.035 3.965 7 H 0.129 0.871 8 C -0.217 4.217 9 N -0.356 5.356 10 C -0.068 4.068 11 C 0.322 3.678 12 O -0.382 6.382 13 C -0.270 4.270 14 S 0.087 5.913 15 C -0.668 4.668 16 H 0.104 0.896 17 C -0.112 4.112 18 N -0.519 5.519 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C 0.040 3.960 24 N -0.200 5.200 25 C -0.014 4.014 26 C -0.251 4.251 27 C -0.022 4.022 28 N -0.234 5.234 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.189 0.811 45 H 0.166 0.834 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.569 18.515 -6.705 24.496 hybrid contribution 2.225 0.198 -1.545 2.716 sum -12.344 18.714 -8.250 23.888 Atomic orbital electron populations 1.21755 0.92538 1.03413 1.01459 1.20175 0.96628 0.94510 0.84112 0.91504 1.60379 1.34810 1.31805 1.02760 1.22422 1.00910 0.93587 0.91071 1.21070 0.86148 0.96121 0.93182 0.87071 1.22093 1.02163 0.99116 0.98325 1.47868 1.11608 1.06291 1.69801 1.21752 0.89052 0.95646 1.00327 1.20217 0.89845 0.81191 0.76583 1.90694 1.40644 1.61662 1.45181 1.23301 0.97151 1.01890 1.04702 1.84803 1.19054 0.97352 1.90106 1.22327 0.95010 0.96662 1.52827 0.89561 1.24701 0.95228 0.97799 0.93514 1.69938 1.17816 1.17679 1.46435 0.86738 0.82388 0.81879 0.80885 1.19215 1.19996 1.15860 1.23191 0.91346 0.87180 0.94254 1.68338 1.16053 1.09588 1.25977 1.23444 0.89060 1.01506 0.87430 1.22986 1.03236 0.96771 1.02143 1.23197 0.91769 0.92589 0.94649 1.68203 1.11523 1.41931 1.01711 0.91566 0.92734 0.90975 0.83122 0.89718 0.95039 0.91460 0.91787 0.92526 0.92448 0.90831 0.91683 0.89011 0.88752 0.91993 0.81094 0.83363 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.40 37.16 0.35 -0.97 16 2 C 0.16 1.75 3.02 -68.86 -0.21 1.54 16 3 H 0.07 0.69 7.78 -51.93 -0.40 0.28 16 4 N -0.66 -8.25 6.11 -107.95 -0.66 -8.91 16 5 C 0.05 0.50 4.78 -3.83 -0.02 0.48 16 6 C 0.14 1.63 2.95 -67.93 -0.20 1.43 16 7 H 0.11 1.63 6.90 -51.93 -0.36 1.27 16 8 C -0.16 -1.44 9.19 37.16 0.34 -1.10 16 9 N -0.62 -8.38 1.83 -173.93 -0.32 -8.70 16 10 C 0.08 0.79 9.28 59.85 0.56 1.35 16 11 C 0.53 9.85 7.69 -10.99 -0.08 9.77 16 12 O -0.51 -11.27 15.19 5.56 0.08 -11.19 16 13 C -0.12 -2.40 4.71 36.01 0.17 -2.23 16 14 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 15 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 16 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 17 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.72 13.97 55.49 0.78 -25.94 16 19 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 23 C 0.31 3.88 6.27 -157.20 -0.99 2.90 16 24 N -0.49 -6.62 10.04 -10.73 -0.11 -6.73 16 25 C 0.15 1.66 11.30 -17.20 -0.19 1.47 16 26 C -0.23 -1.96 10.17 -39.32 -0.40 -2.36 16 27 C 0.14 1.30 11.31 -17.20 -0.19 1.11 16 28 N -0.52 -6.03 10.32 -10.73 -0.11 -6.14 16 29 H 0.07 0.56 7.45 -51.93 -0.39 0.18 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.35 5.01 7.41 -39.29 -0.29 4.72 16 33 H 0.08 0.73 7.44 -51.93 -0.39 0.34 16 34 H 0.03 0.28 6.79 -51.93 -0.35 -0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 40 H 0.06 0.56 6.53 -51.93 -0.34 0.22 16 41 H 0.09 1.74 7.40 -51.92 -0.38 1.36 16 42 H 0.09 1.78 8.11 -51.92 -0.42 1.36 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -35.78 391.45 -8.82 -44.59 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.02 Total: 4.14 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.65 Total: 1.30 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.42 Total: -56.43 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.78 -8.82 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482256752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.357 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds